-
1
-
-
12744261466
-
Computational prediction of miRNAs in Arabidopsis thaliana
-
Adai A., Johnson C., Mlotshwa S., Archer-Evans S., Manocha V., Vance V., et al. Computational prediction of miRNAs in Arabidopsis thaliana. Genome Res 2005, 15:78-91.
-
(2005)
Genome Res
, vol.15
, pp. 78-91
-
-
Adai, A.1
Johnson, C.2
Mlotshwa, S.3
Archer-Evans, S.4
Manocha, V.5
Vance, V.6
-
2
-
-
0242361521
-
Regulation of flowering time and floral organ identity by a microRNA and its APETALA2-like target genes
-
Aukerman M.J., Sakai H. Regulation of flowering time and floral organ identity by a microRNA and its APETALA2-like target genes. Plant Cell 2003, 15:2730-2741.
-
(2003)
Plant Cell
, vol.15
, pp. 2730-2741
-
-
Aukerman, M.J.1
Sakai, H.2
-
3
-
-
22144457368
-
Antiquity of microRNAs and their targets in land plants
-
Axtell M.J., Bartel D.P. Antiquity of microRNAs and their targets in land plants. Plant Cell 2005, 17:1658-1673.
-
(2005)
Plant Cell
, vol.17
, pp. 1658-1673
-
-
Axtell, M.J.1
Bartel, D.P.2
-
4
-
-
34547668337
-
Common functions for diverse small RNAs of land plants
-
Axtell M.J., Snyder J.A., Bartel D.P. Common functions for diverse small RNAs of land plants. Plant Cell 2007, 19:1750-1769.
-
(2007)
Plant Cell
, vol.19
, pp. 1750-1769
-
-
Axtell, M.J.1
Snyder, J.A.2
Bartel, D.P.3
-
5
-
-
0347444723
-
MicroRNAs, genomics, biogenesis, mechanism, and function
-
Bartel D.P. MicroRNAs, genomics, biogenesis, mechanism, and function. Cell 2004, 116:281-297.
-
(2004)
Cell
, vol.116
, pp. 281-297
-
-
Bartel, D.P.1
-
6
-
-
69249101248
-
Cloning and characterization of small non-coding RNAs from grape
-
Carra A., Mica E., Gambino G., Pindo M., Moser C., Enrico M.P., et al. Cloning and characterization of small non-coding RNAs from grape. Plant J 2009, 59:750-763.
-
(2009)
Plant J
, vol.59
, pp. 750-763
-
-
Carra, A.1
Mica, E.2
Gambino, G.3
Pindo, M.4
Moser, C.5
Enrico, M.P.6
-
7
-
-
0038299558
-
Role of microRNAs in plant and animal development
-
Carrington J.C., Ambros V. Role of microRNAs in plant and animal development. Science 2003, 301:336-338.
-
(2003)
Science
, vol.301
, pp. 336-338
-
-
Carrington, J.C.1
Ambros, V.2
-
8
-
-
66049133419
-
Mechanisms of miRNA-mediated post-transcriptional regulation in animal cells
-
Chekulaeva M., Filipowicz W. Mechanisms of miRNA-mediated post-transcriptional regulation in animal cells. Curr Opin Plant Biol 2009, 21:452-460.
-
(2009)
Curr Opin Plant Biol
, vol.21
, pp. 452-460
-
-
Chekulaeva, M.1
Filipowicz, W.2
-
9
-
-
79959967431
-
PsRNATarget: a plant small RNA target analysis server
-
Dai X., Zhao P.X. PsRNATarget: a plant small RNA target analysis server. Nucleic Acids Res 2011, 39:155-159.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 155-159
-
-
Dai, X.1
Zhao, P.X.2
-
10
-
-
34547115664
-
High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes
-
Fahlgren N., Howell M.D., Kasschau K.D., Chapman E.J., Sullivan C.M. High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes. PLoS One 2007, 2:e219.
-
(2007)
PLoS One
, vol.2
-
-
Fahlgren, N.1
Howell, M.D.2
Kasschau, K.D.3
Chapman, E.J.4
Sullivan, C.M.5
-
11
-
-
57049169777
-
Evolution of Arabidopsis thaliana microRNAs from random sequences
-
Felippes F.F., Schneeberger K., Dezulain T., Huson D.H., Weigel D. Evolution of Arabidopsis thaliana microRNAs from random sequences. RNA 2008, 14:2455-2459.
-
(2008)
RNA
, vol.14
, pp. 2455-2459
-
-
Felippes, F.F.1
Schneeberger, K.2
Dezulain, T.3
Huson, D.H.4
Weigel, D.5
-
12
-
-
1842484780
-
Gene regulation: ancient microRNA target sequences in plants
-
Floyd S.K., Bowman J.L. Gene regulation: ancient microRNA target sequences in plants. Nature 2004, 428:485-486.
-
(2004)
Nature
, vol.428
, pp. 485-486
-
-
Floyd, S.K.1
Bowman, J.L.2
-
13
-
-
38949159125
-
Identification and characterisation of primary microRNAs from apple (Malus domestica cv. Royal Gala) expressed sequence tags
-
Gleave A.P., Ampomah-Dwamena C., Berthold S., Dejnoprat S., Karunairetnam S., Nain B., et al. Identification and characterisation of primary microRNAs from apple (Malus domestica cv. Royal Gala) expressed sequence tags. Tree Genet Genomes 2008, 4:343-358.
-
(2008)
Tree Genet Genomes
, vol.4
, pp. 343-358
-
-
Gleave, A.P.1
Ampomah-Dwamena, C.2
Berthold, S.3
Dejnoprat, S.4
Karunairetnam, S.5
Nain, B.6
-
14
-
-
38549150275
-
MiRBase: tools for microRNA genomics
-
Griffiths-Jones S., Saini H.K., Dongen S., Enright A.J. MiRBase: tools for microRNA genomics. Nucleic Acids Res 2008, 36:154-158.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 154-158
-
-
Griffiths-Jones, S.1
Saini, H.K.2
Dongen, S.3
Enright, A.J.4
-
15
-
-
24944510549
-
MicroRNA directs mRNA cleavage of the transcription factor NAC1 to downregulate auxin signals for Arabidopsis lateral root development
-
Guo H.S., Xie Q., Fei J.F., Chua N.H. MicroRNA directs mRNA cleavage of the transcription factor NAC1 to downregulate auxin signals for Arabidopsis lateral root development. Plant Cell 2005, 17:1376-1386.
-
(2005)
Plant Cell
, vol.17
, pp. 1376-1386
-
-
Guo, H.S.1
Xie, Q.2
Fei, J.F.3
Chua, N.H.4
-
16
-
-
33646867882
-
Memory efficient folding algorithms for circular RNA secondary structures
-
Hofacker I.L., Stadler P.F. Memory efficient folding algorithms for circular RNA secondary structures. Bioinformatics 2006, 22:1172-1176.
-
(2006)
Bioinformatics
, vol.22
, pp. 1172-1176
-
-
Hofacker, I.L.1
Stadler, P.F.2
-
17
-
-
77949875682
-
MicroRNA control of signal transduction
-
Inui M., Martello G., Piccolo S. MicroRNA control of signal transduction. Nature 2010, 11:252-263.
-
(2010)
Nature
, vol.11
, pp. 252-263
-
-
Inui, M.1
Martello, G.2
Piccolo, S.3
-
18
-
-
74049121208
-
Prediction of plant miRNA genes
-
Jones-Rhoades M.W. Prediction of plant miRNA genes. Methods Mol Biol 2010, 592:19-30.
-
(2010)
Methods Mol Biol
, vol.592
, pp. 19-30
-
-
Jones-Rhoades, M.W.1
-
20
-
-
1542317414
-
MicroRNA-mediated repression of rolled leaf specifies maize leaf polarity
-
Juarez M.T., Kui J.S., Thomas J., Heller B.A., Timmermans M.C. MicroRNA-mediated repression of rolled leaf specifies maize leaf polarity. Nature 2004, 428:84-88.
-
(2004)
Nature
, vol.428
, pp. 84-88
-
-
Juarez, M.T.1
Kui, J.S.2
Thomas, J.3
Heller, B.A.4
Timmermans, M.C.5
-
21
-
-
77955902024
-
The widespread regulation of microRNA biogenesis, function and decay
-
Krol J., Loedige I., Filipowicz W. The widespread regulation of microRNA biogenesis, function and decay. Nat Rev Genet 2010, 11:597-610.
-
(2010)
Nat Rev Genet
, vol.11
, pp. 597-610
-
-
Krol, J.1
Loedige, I.2
Filipowicz, W.3
-
22
-
-
19544390155
-
Predicting and validating microRNA targets
-
Lai E.C. Predicting and validating microRNA targets. Genome Biol 2004, 5:I15.
-
(2004)
Genome Biol
, vol.5
-
-
Lai, E.C.1
-
23
-
-
4444275405
-
MicroRNA regulation of the CUC genes is required for boundary size control in Arabidopsis meristems
-
Laufs P., Peaucelle A., Morin H., Traas J. MicroRNA regulation of the CUC genes is required for boundary size control in Arabidopsis meristems. Development 2004, 131:4311-4322.
-
(2004)
Development
, vol.131
, pp. 4311-4322
-
-
Laufs, P.1
Peaucelle, A.2
Morin, H.3
Traas, J.4
-
24
-
-
1542351278
-
MicroRNAs: something important between the genes
-
Mallory A.C., Vaucheret H. MicroRNAs: something important between the genes. Curr Opin Plant Biol 2004, 7:120-125.
-
(2004)
Curr Opin Plant Biol
, vol.7
, pp. 120-125
-
-
Mallory, A.C.1
Vaucheret, H.2
-
25
-
-
2942697259
-
MicroRNA regulation of NAC-domain targets is required for proper formation and separation of adjacent embryonic, vegetative, and floral organs
-
Mallory A.C., Dugas D.V., Bartel D.P., Bartel B. MicroRNA regulation of NAC-domain targets is required for proper formation and separation of adjacent embryonic, vegetative, and floral organs. Curr Biol 2004, 14:1035-1046.
-
(2004)
Curr Biol
, vol.14
, pp. 1035-1046
-
-
Mallory, A.C.1
Dugas, D.V.2
Bartel, D.P.3
Bartel, B.4
-
26
-
-
53549106068
-
Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening
-
Moxon S., Jing R., Szittya G., Schwach F., Pilcher R.L., Moulton V., et al. Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening. Genome Res 2008, 18:1602-1609.
-
(2008)
Genome Res
, vol.18
, pp. 1602-1609
-
-
Moxon, S.1
Jing, R.2
Szittya, G.3
Schwach, F.4
Pilcher, R.L.5
Moulton, V.6
-
27
-
-
52949088691
-
A tool kit for analysing large-scale plant small RNA datasets
-
Moxon S., Schwach F., Maclean D., Dalmay T., Studholme D.J., Moulton V. A tool kit for analysing large-scale plant small RNA datasets. Bioinformatics 2008, 24:2252-2253.
-
(2008)
Bioinformatics
, vol.24
, pp. 2252-2253
-
-
Moxon, S.1
Schwach, F.2
Maclean, D.3
Dalmay, T.4
Studholme, D.J.5
Moulton, V.6
-
28
-
-
76049118057
-
MiR319a targeting of TCP4 is critical for petal growth and development in Arabidopsis
-
Nag A., King S., Jack T. miR319a targeting of TCP4 is critical for petal growth and development in Arabidopsis. Proc Natl Acad Sci 2009, 106:22534-22539.
-
(2009)
Proc Natl Acad Sci
, vol.106
, pp. 22534-22539
-
-
Nag, A.1
King, S.2
Jack, T.3
-
29
-
-
33645967758
-
A plant miRNA contributes to antibacterial resistance by repressing auxin signaling
-
Navarro L., Dunoyer P., Jay F., Arnold B., Dharmasiri N., Estelle M., et al. A plant miRNA contributes to antibacterial resistance by repressing auxin signaling. Science 2006, 312:436-439.
-
(2006)
Science
, vol.312
, pp. 436-439
-
-
Navarro, L.1
Dunoyer, P.2
Jay, F.3
Arnold, B.4
Dharmasiri, N.5
Estelle, M.6
-
30
-
-
34250832061
-
Sequence and expression differences underlie functional specialization of Arabidopsis microRNAs miR159 and miR319
-
Palatnik J.F., Wollmann H., Schommer C., Schwab R., Boisbouvier J., Rodriguez R., et al. Sequence and expression differences underlie functional specialization of Arabidopsis microRNAs miR159 and miR319. Dev. Cell 2007, 13:115-125.
-
(2007)
Dev. Cell
, vol.13
, pp. 115-125
-
-
Palatnik, J.F.1
Wollmann, H.2
Schommer, C.3
Schwab, R.4
Boisbouvier, J.5
Rodriguez, R.6
-
31
-
-
34247624029
-
Computational identification of microRNAs and their targets in Gossypium hirsutum expressed sequence tags
-
Qiu C.X., Xie F.L., Zhu Y.Y., Guo K., Huang S.Q., Nie L., et al. Computational identification of microRNAs and their targets in Gossypium hirsutum expressed sequence tags. Gene 2007, 395:49-61.
-
(2007)
Gene
, vol.395
, pp. 49-61
-
-
Qiu, C.X.1
Xie, F.L.2
Zhu, Y.Y.3
Guo, K.4
Huang, S.Q.5
Nie, L.6
-
32
-
-
0037435395
-
Assumption-free analysis of quantitative real-time polymerase chain reaction (PCR) data
-
Ramakers C., Ruijter J.M., Deprez R.H., Moorman A.F.M. Assumption-free analysis of quantitative real-time polymerase chain reaction (PCR) data. Neurosci Lett 2003, 339:62-66.
-
(2003)
Neurosci Lett
, vol.339
, pp. 62-66
-
-
Ramakers, C.1
Ruijter, J.M.2
Deprez, R.H.3
Moorman, A.F.M.4
-
33
-
-
2942672580
-
Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
-
Rhoades M.W., Bartel D.P. Computational identification of plant microRNAs and their targets, including a stress-induced miRNA. Mol Cell 2004, 14:787-799.
-
(2004)
Mol Cell
, vol.14
, pp. 787-799
-
-
Rhoades, M.W.1
Bartel, D.P.2
-
34
-
-
0037162702
-
Prediction of plant microRNA targets
-
Rhoades M.W., Reinhart B.J., Lim L.P., Burge C.B., Bartel B. Prediction of plant microRNA targets. Cell 2002, 110:513-520.
-
(2002)
Cell
, vol.110
, pp. 513-520
-
-
Rhoades, M.W.1
Reinhart, B.J.2
Lim, L.P.3
Burge, C.B.4
Bartel, B.5
-
35
-
-
30344456035
-
Facile means for quantifying microRNA expression by real-time PCR
-
Shi R., Chiang V.L. Facile means for quantifying microRNA expression by real-time PCR. Biotechniques 2005, 39:519-525.
-
(2005)
Biotechniques
, vol.39
, pp. 519-525
-
-
Shi, R.1
Chiang, V.L.2
-
36
-
-
69249229480
-
Identification and characterization of 27 conserved microRNAs in citrus
-
Song C.N., Fang J.G., Li X.Y., Liu H., Chao C.T. Identification and characterization of 27 conserved microRNAs in citrus. Planta 2009, 230:671-685.
-
(2009)
Planta
, vol.230
, pp. 671-685
-
-
Song, C.N.1
Fang, J.G.2
Li, X.Y.3
Liu, H.4
Chao, C.T.5
-
37
-
-
77955196800
-
MiR-RACE a new efficient approach to determine the precise sequences of computationally identified trifoliate orange (Poncirus trifoliata) microRNAs
-
Song C.N., Fang J.G., Wang C., Guo L., Korir N.K., Ma Z. miR-RACE a new efficient approach to determine the precise sequences of computationally identified trifoliate orange (Poncirus trifoliata) microRNAs. PLoS One 2010, 5:e10861.
-
(2010)
PLoS One
, vol.5
-
-
Song, C.N.1
Fang, J.G.2
Wang, C.3
Guo, L.4
Korir, N.K.5
Ma, Z.6
-
38
-
-
4043074968
-
Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis
-
Sunkar R., Zhu J.K. Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis. Plant Cell 2004, 16:2001-2019.
-
(2004)
Plant Cell
, vol.16
, pp. 2001-2019
-
-
Sunkar, R.1
Zhu, J.K.2
-
39
-
-
79960905152
-
Characterization of microRNAs identified in a table grapevine cultivar with validation of computationally predicted grapevine miRNAs by miR-RACE
-
Wang C., Shangguan L.F., Korir N.K., Wang X.C., Han J., Song C.N., et al. Characterization of microRNAs identified in a table grapevine cultivar with validation of computationally predicted grapevine miRNAs by miR-RACE. PLoS One 2011, 6:e21259.
-
(2011)
PLoS One
, vol.6
-
-
Wang, C.1
Shangguan, L.F.2
Korir, N.K.3
Wang, X.C.4
Han, J.5
Song, C.N.6
-
40
-
-
80051564048
-
Deep sequencing of grapevine flower and berry short RNA library for discovery of novel microRNAs and validation of precise sequences of grapevine microRNAs deposited in miRBase
-
Wang C., Wang X.C., Korir N.K., Song C.N., Zhang C.Q., Li X.Y., et al. Deep sequencing of grapevine flower and berry short RNA library for discovery of novel microRNAs and validation of precise sequences of grapevine microRNAs deposited in miRBase. Physiol Plant 2011, 143:64-81.
-
(2011)
Physiol Plant
, vol.143
, pp. 64-81
-
-
Wang, C.1
Wang, X.C.2
Korir, N.K.3
Song, C.N.4
Zhang, C.Q.5
Li, X.Y.6
-
41
-
-
12744262431
-
Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets
-
Wang X.J., Reyes J.L., Chua N.H., Gaasterland T. Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets. Genome Biol 2004, 5:R65.
-
(2004)
Genome Biol
, vol.5
-
-
Wang, X.J.1
Reyes, J.L.2
Chua, N.H.3
Gaasterland, T.4
-
42
-
-
33947411951
-
Computational identification of novel microRNAs and targets in Brassica napus
-
Xie F.L., Huang S.Q., Guo K., Xiang A.L., Zhu Y.Y., Nie L., et al. Computational identification of novel microRNAs and targets in Brassica napus. FEBS Lett 2007, 581:1464-1474.
-
(2007)
FEBS Lett
, vol.581
, pp. 1464-1474
-
-
Xie, F.L.1
Huang, S.Q.2
Guo, K.3
Xiang, A.L.4
Zhu, Y.Y.5
Nie, L.6
-
43
-
-
34250879059
-
Transcriptional, post-transcriptional and post-translational regulations of gene expression during leaf polarity formation
-
Xu L., Yang L., Hang H. Transcriptional, post-transcriptional and post-translational regulations of gene expression during leaf polarity formation. Cell Res 2007, 17:512-519.
-
(2007)
Cell Res
, vol.17
, pp. 512-519
-
-
Xu, L.1
Yang, L.2
Hang, H.3
-
44
-
-
41949100147
-
Identification of conserved microRNAs and their target genes in tomato (Lycopersicon esculentum)
-
Yin Z., Li C.H., Han X.L., Shen F.F. Identification of conserved microRNAs and their target genes in tomato (Lycopersicon esculentum). Gene 2008, 414:60-66.
-
(2008)
Gene
, vol.414
, pp. 60-66
-
-
Yin, Z.1
Li, C.H.2
Han, X.L.3
Shen, F.F.4
-
45
-
-
78650051464
-
Computational identification of microRNAs in apple expressed sequence tags and validation of their precise sequences by miR-RACE
-
Yu H.P., Song C.N., Jia Q.D., Wang C., Li F., Nicholas K.K., et al. Computational identification of microRNAs in apple expressed sequence tags and validation of their precise sequences by miR-RACE. Physiol Plant 2010, 141:56-70.
-
(2010)
Physiol Plant
, vol.141
, pp. 56-70
-
-
Yu, H.P.1
Song, C.N.2
Jia, Q.D.3
Wang, C.4
Li, F.5
Nicholas, K.K.6
-
46
-
-
77950360655
-
Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants
-
Zeng C.Y., Wang W.Q., Zheng Y., Chen X., Bo W.P., Song S., et al. Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants. Nucleic Acids Res 2010, 38:981-995.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 981-995
-
-
Zeng, C.Y.1
Wang, W.Q.2
Zheng, Y.3
Chen, X.4
Bo, W.P.5
Song, S.6
-
47
-
-
33745156778
-
Identification of 188 conserved maize microRNAs and their targets
-
Zhang B.H., Pan X.P., Anderson T.A. Identification of 188 conserved maize microRNAs and their targets. FEBS Lett 2006, 580:3753-3762.
-
(2006)
FEBS Lett
, vol.580
, pp. 3753-3762
-
-
Zhang, B.H.1
Pan, X.P.2
Anderson, T.A.3
-
48
-
-
33646830110
-
Conservation and divergence of plant microRNA genes
-
Zhang B.H., Pan X.P., Cannon C.H., Cobb G.P., Anderson T.A. Conservation and divergence of plant microRNA genes. Plant J 2006, 46:243-259.
-
(2006)
Plant J
, vol.46
, pp. 243-259
-
-
Zhang, B.H.1
Pan, X.P.2
Cannon, C.H.3
Cobb, G.P.4
Anderson, T.A.5
-
49
-
-
33751250183
-
Computational identification of microRNAs and their targets
-
Zhang B.H., Pan X.P., Wang Q.L., Cobb G.P., Anderson T.A. Computational identification of microRNAs and their targets. Comput Biol Chem 2006, 30:395-407.
-
(2006)
Comput Biol Chem
, vol.30
, pp. 395-407
-
-
Zhang, B.H.1
Pan, X.P.2
Wang, Q.L.3
Cobb, G.P.4
Anderson, T.A.5
-
50
-
-
34250818778
-
Identification of cotton microRNAs and their targets
-
Zhang B.H., Wang Q.L., Wang K.B., Pan X.P., Liu F., Guo T.L., et al. Identification of cotton microRNAs and their targets. Gene 2007, 397:26-37.
-
(2007)
Gene
, vol.397
, pp. 26-37
-
-
Zhang, B.H.1
Wang, Q.L.2
Wang, K.B.3
Pan, X.P.4
Liu, F.5
Guo, T.L.6
-
51
-
-
84860318099
-
Computational identification of microRNAs in peach expressed sequence tags and validation of their precise sequences by miR-RACE
-
Zhang Y.P., Yu M.L., Yu H.P., Han J., Song C.N., Ma R.J., et al. Computational identification of microRNAs in peach expressed sequence tags and validation of their precise sequences by miR-RACE. Mol Biol Rep 2012, 39:1975-1987.
-
(2012)
Mol Biol Rep
, vol.39
, pp. 1975-1987
-
-
Zhang, Y.P.1
Yu, M.L.2
Yu, H.P.3
Han, J.4
Song, C.N.5
Ma, R.J.6
|