-
2
-
-
79955706903
-
The study of a SPATULA-like bHLH transcription factor expressed during peach (Prunus persica) fruit development
-
Tani E, Tsaballa A, Stedel C, Kalloniati C, Papaefthimiou D, et al. (2011) The study of a SPATULA-like bHLH transcription factor expressed during peach (Prunus persica) fruit development. Plant Physiol Biochem 49: 6. 654-63.
-
(2011)
Plant Physiol Biochem
, vol.49
, pp. 654-663
-
-
Tani, E.1
Tsaballa, A.2
Stedel, C.3
Kalloniati, C.4
Papaefthimiou, D.5
-
3
-
-
49749115222
-
A framework physical map for peach, a model Rosaceae species
-
Zhebentyayeva TN, Swire-Clark G, Georgi LL, Garay L, Jung S, et al. (2008) A framework physical map for peach, a model Rosaceae species. Tree Genet Genomes 4: 745-756.
-
(2008)
Tree Genet Genomes
, vol.4
, pp. 745-756
-
-
Zhebentyayeva, T.N.1
Swire-Clark, G.2
Georgi, L.L.3
Garay, L.4
Jung, S.5
-
4
-
-
0028254263
-
Estimating nuclear DNA content in peach and related diploid species using laser flow cytometry and DNA hybridization
-
Baird WV, Estager AS, Wells J, (1994) Estimating nuclear DNA content in peach and related diploid species using laser flow cytometry and DNA hybridization. J Am Soc Hortic Sci 119: 1312-1216.
-
(1994)
J Am Soc Hortic Sci
, vol.119
, pp. 1216-1312
-
-
Baird, W.V.1
Estager, A.S.2
Wells, J.3
-
5
-
-
0006287603
-
Productivity of peach trees: tree growth and water stress in relation to fruit growth and assimilate demand
-
Chalmers DJ, Wilson LB, (1978) Productivity of peach trees: tree growth and water stress in relation to fruit growth and assimilate demand. Ann Bot 42: 285-294.
-
(1978)
Ann Bot
, vol.42
, pp. 285-294
-
-
Chalmers, D.J.1
Wilson, L.B.2
-
6
-
-
0027011941
-
Comparison of drought resistance among Prunus species from divergent habitats
-
Rieger M, Duemmel MJ, (1992) Comparison of drought resistance among Prunus species from divergent habitats. Tree Physiol 11: 369-380.
-
(1992)
Tree Physiol
, vol.11
, pp. 369-380
-
-
Rieger, M.1
Duemmel, M.J.2
-
7
-
-
84870772243
-
Plant microRNAs: new players in functional genomics
-
doi:10.3906/tar-1206-50
-
Eldem V, Okay S, Unver T, (2012) Plant microRNAs: new players in functional genomics. Turk J of Agr and Forestry doi:10.3906/tar-1206-50.
-
(2012)
Turk J of Agr and Forestry
-
-
Eldem, V.1
Okay, S.2
Unver, T.3
-
9
-
-
78650520209
-
Regulation of barley miRNAs upon dehydration stress correlated with target gene expression
-
Kantar M, Unver T, Budak H, (2010) Regulation of barley miRNAs upon dehydration stress correlated with target gene expression. Funct Integr Genomics 10: 493-507.
-
(2010)
Funct Integr Genomics
, vol.10
, pp. 493-507
-
-
Kantar, M.1
Unver, T.2
Budak, H.3
-
10
-
-
69249215127
-
Conserved microRNAs and their targets in model grass species Brachypodium distachyon
-
Unver T, Budak H, (2009) Conserved microRNAs and their targets in model grass species Brachypodium distachyon. Planta 230: 659-69.
-
(2009)
Planta
, vol.230
, pp. 659-669
-
-
Unver, T.1
Budak, H.2
-
11
-
-
16244398080
-
Specific effects of microRNAs on the plant transcriptome
-
Schwab R, Palatnik JF, Riester M, Schommer C, Schmid M, et al. (2005) Specific effects of microRNAs on the plant transcriptome. Dev Cell 8: 517-527.
-
(2005)
Dev Cell
, vol.8
, pp. 517-527
-
-
Schwab, R.1
Palatnik, J.F.2
Riester, M.3
Schommer, C.4
Schmid, M.5
-
12
-
-
0347444723
-
MicroRNAs: genomics, biogenesis, mechanism, and function
-
Bartel DP, (2004) MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 116: 281-297.
-
(2004)
Cell
, vol.116
, pp. 281-297
-
-
Bartel, D.P.1
-
13
-
-
0038299558
-
Role of microRNAs in plant and animal development
-
Carrington JC, Ambros V, (2003) Role of microRNAs in plant and animal development. Science 301: 336-338.
-
(2003)
Science
, vol.301
, pp. 336-338
-
-
Carrington, J.C.1
Ambros, V.2
-
14
-
-
29144527030
-
Plant microRNA: a small regulatory molecule with big impact
-
Zhang B, Pan XP, Cobb GP, Anderson TA, (2006b) Plant microRNA: a small regulatory molecule with big impact. Dev Biol 289: 3-16.
-
(2006)
Dev Biol
, vol.289
, pp. 3-16
-
-
Zhang, B.1
Pan, X.P.2
Cobb, G.P.3
Anderson, T.A.4
-
15
-
-
26944437949
-
MicroRNA biogenesis and function in plants
-
Chen X, (2005) MicroRNA biogenesis and function in plants. FEBS Lett 579: 5923-5931.
-
(2005)
FEBS Lett
, vol.579
, pp. 5923-5931
-
-
Chen, X.1
-
16
-
-
8144225486
-
MicroRNA genes are transcribed by RNA polymerase II
-
Lee Y, Kim M, Han J, Yeom KH, Lee S, et al. (2004) MicroRNA genes are transcribed by RNA polymerase II. EMBO J 23: 4051-4060.
-
(2004)
EMBO J
, vol.23
, pp. 4051-4060
-
-
Lee, Y.1
Kim, M.2
Han, J.3
Yeom, K.H.4
Lee, S.5
-
17
-
-
4344637081
-
Arabidopsis micro-RNA biogenesis through Dicer-like 1 protein functions
-
Kurihara Y, Watanabe Y, (2004) Arabidopsis micro-RNA biogenesis through Dicer-like 1 protein functions. Proc Natl Acad Sci USA 101: 12753-12758.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 12753-12758
-
-
Kurihara, Y.1
Watanabe, Y.2
-
18
-
-
34247334843
-
Arabidopsis primary microRNA processing proteins HYL1 and DCL1 define a nuclear body distinct from the Cajal body
-
Song L, Han MH, Lesicka J, Fedoroff N, (2007) Arabidopsis primary microRNA processing proteins HYL1 and DCL1 define a nuclear body distinct from the Cajal body. Proc Natl Acad Sci USA 104: 5437-5442.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 5437-5442
-
-
Song, L.1
Han, M.H.2
Lesicka, J.3
Fedoroff, N.4
-
19
-
-
34247368510
-
Identification of nuclear dicing bodies containing proteins for microRNA biogenesis in living Arabidopsis plants
-
Fang Y, Spector DL, (2007) Identification of nuclear dicing bodies containing proteins for microRNA biogenesis in living Arabidopsis plants. Curr Biol 17: 818-823.
-
(2007)
Curr Biol
, vol.17
, pp. 818-823
-
-
Fang, Y.1
Spector, D.L.2
-
20
-
-
33748314483
-
SERRATE is a novel nuclear regulator in primary microRNA processing in Arabidopsis
-
Yang L, Liu Z, Lu F, Dong A, Huang H, (2006) SERRATE is a novel nuclear regulator in primary microRNA processing in Arabidopsis. Plant J 47: 841-850.
-
(2006)
Plant J
, vol.47
, pp. 841-850
-
-
Yang, L.1
Liu, Z.2
Lu, F.3
Dong, A.4
Huang, H.5
-
21
-
-
33749254470
-
SERRATE: a new player on the plant microRNA scene
-
Lobbes D, Rallapalli G, Schmidt DD, Martin C, Clarke J, (2006) SERRATE: a new player on the plant microRNA scene. EMBO Rep 7: 1052-1058.
-
(2006)
EMBO Rep
, vol.7
, pp. 1052-1058
-
-
Lobbes, D.1
Rallapalli, G.2
Schmidt, D.D.3
Martin, C.4
Clarke, J.5
-
22
-
-
23844530681
-
Asymmetry of intronic pre-miRNA structures in functional RISC assembly
-
Lin SL, Chang D, Ying SY, (2005) Asymmetry of intronic pre-miRNA structures in functional RISC assembly. Gene 356: 32-38.
-
(2005)
Gene
, vol.356
, pp. 32-38
-
-
Lin, S.L.1
Chang, D.2
Ying, S.Y.3
-
23
-
-
78651293534
-
miRBase: integrating microRNA annotation and deep-sequencing data
-
Kozomara A, Griffiths-Jones S, (2011) miRBase: integrating microRNA annotation and deep-sequencing data. Nucleic acids research 39: D152-D157.
-
(2011)
Nucleic Acids Research
, vol.39
-
-
Kozomara, A.1
Griffiths-Jones, S.2
-
24
-
-
75549083571
-
PMRD: plant microRNA database
-
Zhang Z, Yu J, Li D, Zhang Z, Liu F, et al. (2010) PMRD: plant microRNA database. Nucleic Acids Res 38: D806-813.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Zhang, Z.1
Yu, J.2
Li, D.3
Zhang, Z.4
Liu, F.5
-
25
-
-
0037015239
-
CARPEL FACTORY, a Dicer Homolog, and HEN1, a Novel Protein, Act in microRNA metabolism in Arabidopsis thaliana
-
Park W, Li J, Song R, Messing J, Chen X, (2002) CARPEL FACTORY, a Dicer Homolog, and HEN1, a Novel Protein, Act in microRNA metabolism in Arabidopsis thaliana. Curr Biol 12: 1484-1495.
-
(2002)
Curr Biol
, vol.12
, pp. 1484-1495
-
-
Park, W.1
Li, J.2
Song, R.3
Messing, J.4
Chen, X.5
-
26
-
-
0036645146
-
MicroRNAs in plants
-
Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP, (2002) MicroRNAs in plants. Genes & Dev 16: 1616-1626.
-
(2002)
Genes & Dev
, vol.16
, pp. 1616-1626
-
-
Reinhart, B.J.1
Weinstein, E.G.2
Rhoades, M.W.3
Bartel, B.4
Bartel, D.P.5
-
27
-
-
69949093486
-
Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families
-
Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, et al. (2009) Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families. New Phytol 184: 85-98.
-
(2009)
New Phytol
, vol.184
, pp. 85-98
-
-
Jagadeeswaran, G.1
Zheng, Y.2
Li, Y.F.3
Shukla, L.I.4
Matts, J.5
-
28
-
-
39549115890
-
Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)
-
Yao Y, Guo G, Ni Z, Sunkar R, Du J, et al. (2007) Cloning and characterization of microRNAs from wheat (Triticum aestivum L.). Genome Biol 8: R96.
-
(2007)
Genome Biol
, vol.8
-
-
Yao, Y.1
Guo, G.2
Ni, Z.3
Sunkar, R.4
Du, J.5
-
29
-
-
3142726606
-
Identification of microRNAs and other tiny noncoding RNAs by cDNA cloning
-
Ambros V, Lee RC, (2004) Identification of microRNAs and other tiny noncoding RNAs by cDNA cloning. Methods Mol Biol 265: 131-158.
-
(2004)
Methods Mol Biol
, vol.265
, pp. 131-158
-
-
Ambros, V.1
Lee, R.C.2
-
30
-
-
77955699089
-
Identification of conserved micro-RNAs and their target transcripts in opium poppy (Papaver somniferum L.)
-
Unver T, Parmaksiz I, Dundar E, (2010) Identification of conserved micro-RNAs and their target transcripts in opium poppy (Papaver somniferum L.). Plant Cell Reports 29: 757-769.
-
(2010)
Plant Cell Reports
, vol.29
, pp. 757-769
-
-
Unver, T.1
Parmaksiz, I.2
Dundar, E.3
-
31
-
-
77949885564
-
Genome-wide profiling and analysis of Festuca arundinacea miRNAs and transcriptomes in response to foliar glyphosate application
-
Unver T, Bakar M, Shearman RC, Budak H, (2010) Genome-wide profiling and analysis of Festuca arundinacea miRNAs and transcriptomes in response to foliar glyphosate application. Mol Genet Genomics 283: 397-413.
-
(2010)
Mol Genet Genomics
, vol.283
, pp. 397-413
-
-
Unver, T.1
Bakar, M.2
Shearman, R.C.3
Budak, H.4
-
32
-
-
29144470346
-
Real-time quantification of microRNAs by stem-loop RT-PCR
-
Chen C, Ridzon DA, Broomer AJ, Zhou Z, Lee DH, et al. (2005) Real-time quantification of microRNAs by stem-loop RT-PCR. Nucleic Acid Res 33.
-
(2005)
Nucleic Acid Res
, vol.33
-
-
Chen, C.1
Ridzon, D.A.2
Broomer, A.J.3
Zhou, Z.4
Lee, D.H.5
-
33
-
-
70350438585
-
Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response
-
Zhang J, Xu Y, Huan Q, Chong K, (2009) Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response. BMC Genomics 10: 449.
-
(2009)
BMC Genomics
, vol.10
, pp. 449
-
-
Zhang, J.1
Xu, Y.2
Huan, Q.3
Chong, K.4
-
34
-
-
79960995874
-
Analysis of the melon (Cucumis melo) small RNAome by high-throughput pyrosequencing
-
Gonzalez-Ibeas D, Blanca J, Donaire L, Saladié M, Mascarell-Creus A, et al. (2011) Analysis of the melon (Cucumis melo) small RNAome by high-throughput pyrosequencing. BMC Genomics 12: 393.
-
(2011)
BMC Genomics
, vol.12
, pp. 393
-
-
Gonzalez-Ibeas, D.1
Blanca, J.2
Donaire, L.3
Saladié, M.4
Mascarell-Creus, A.5
-
35
-
-
79952004220
-
Investigation of the microRNAs in safflower seed, leaf, and petal by high-throughput sequencing
-
Li H, Dong Y, Sun Y, Zhu E, Yang J, et al. (2011) Investigation of the microRNAs in safflower seed, leaf, and petal by high-throughput sequencing. Planta 233: 611-619.
-
(2011)
Planta
, vol.233
, pp. 611-619
-
-
Li, H.1
Dong, Y.2
Sun, Y.3
Zhu, E.4
Yang, J.5
-
36
-
-
70350029271
-
Novel microRNAs uncovered by deep sequencing of small RNA transcriptomes in bread wheat (Triticum aestivum L.) and Brachypodium distachyon (L.) Beauv
-
Wei B, Cai T, Zhang R, Li A, Huo N, et al. (2009) Novel microRNAs uncovered by deep sequencing of small RNA transcriptomes in bread wheat (Triticum aestivum L.) and Brachypodium distachyon (L.) Beauv. Funct Integr Genomics 9: 499-511.
-
(2009)
Funct Integr Genomics
, vol.9
, pp. 499-511
-
-
Wei, B.1
Cai, T.2
Zhang, R.3
Li, A.4
Huo, N.5
-
37
-
-
84856067479
-
The miRNAome of globe artichoke: conserved and novel micro RNAs and target analysis
-
De Paola D, Cattonaro F, Pignone D, Sonnante G, (2012) The miRNAome of globe artichoke: conserved and novel micro RNAs and target analysis. BMC Genomics 13: 41.
-
(2012)
BMC Genomics
, vol.13
, pp. 41
-
-
de Paola, D.1
Cattonaro, F.2
Pignone, D.3
Sonnante, G.4
-
38
-
-
39549110203
-
MicroRNA detection by northern blotting using locked nucleic acid probes
-
Varallyay E, Burgyan J, Havelda Z, (2008) MicroRNA detection by northern blotting using locked nucleic acid probes. Nat Protoc 3: 190-196.
-
(2008)
Nat Protoc
, vol.3
, pp. 190-196
-
-
Varallyay, E.1
Burgyan, J.2
Havelda, Z.3
-
39
-
-
74049127867
-
In situ detection of miRNAs using LNA probes
-
Havelda Z, (2010) In situ detection of miRNAs using LNA probes. Methods Mol Biol 592: 127-136.
-
(2010)
Methods Mol Biol
, vol.592
, pp. 127-136
-
-
Havelda, Z.1
-
40
-
-
84855916443
-
MicroRNA in situ hybridization
-
Nielsen BS, (2012) MicroRNA in situ hybridization. Methods Mol Biol 822: 67-84.
-
(2012)
Methods Mol Biol
, vol.822
, pp. 67-84
-
-
Nielsen, B.S.1
-
41
-
-
79960260124
-
Microarray-based analysis of cadmium-responsive microRNAs in rice (Oryza sativa)
-
Ding Y, Chen Z, Zhu C, (2011) Microarray-based analysis of cadmium-responsive microRNAs in rice (Oryza sativa). J Exp Bot 62: 3563-3573.
-
(2011)
J Exp Bot
, vol.62
, pp. 3563-3573
-
-
Ding, Y.1
Chen, Z.2
Zhu, C.3
-
42
-
-
42449109504
-
Microarray-based analysis of stress-regulated microRNAs in Arabidopsis thaliana
-
Liu HH, Tian X, Li YJ, Wu CA, Zheng CC, (2008) Microarray-based analysis of stress-regulated microRNAs in Arabidopsis thaliana. RNA 14: 836-843.
-
(2008)
RNA
, vol.14
, pp. 836-843
-
-
Liu, H.H.1
Tian, X.2
Li, Y.J.3
Wu, C.A.4
Zheng, C.C.5
-
43
-
-
77950484612
-
Deep sequencing identifies novel and conserved microRNAs in peanuts (Arachis hypogaea L.)
-
Zhao CZ, Xia H, Frazier TP, Yao YY, Bi YP, et al. (2010) Deep sequencing identifies novel and conserved microRNAs in peanuts (Arachis hypogaea L.). BMC Plant Biol 10: 3.
-
(2010)
BMC Plant Biol
, vol.10
, pp. 3
-
-
Zhao, C.Z.1
Xia, H.2
Frazier, T.P.3
Yao, Y.Y.4
Bi, Y.P.5
-
44
-
-
69249147045
-
Expression profiling of microRNAs by deep sequencing
-
Creighton CJ, Reid JG, Gunaratne PH, (2009) Expression profiling of microRNAs by deep sequencing. Brief Bioinform 10 (5) (): 490-7.
-
(2009)
Brief Bioinform
, vol.10
, Issue.5
, pp. 490-497
-
-
Creighton, C.J.1
Reid, J.G.2
Gunaratne, P.H.3
-
45
-
-
77953489252
-
Identification of grapevine microRNAs and their targets using high throughput sequencing and degradome analysis
-
Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, et al. (2010) Identification of grapevine microRNAs and their targets using high throughput sequencing and degradome analysis. Plant J 62: 960-976.
-
(2010)
Plant J
, vol.62
, pp. 960-976
-
-
Pantaleo, V.1
Szittya, G.2
Moxon, S.3
Miozzi, L.4
Moulton, V.5
-
46
-
-
77951190661
-
Systematic comparison of microarray profiling, real-time PCR, and next-generation sequencing technologies for measuring differential microRNA expression
-
Git A, Dvinge H, Salmon-Divon M, Osborne M, Kutter C, et al. (2010) Systematic comparison of microarray profiling, real-time PCR, and next-generation sequencing technologies for measuring differential microRNA expression. RNA 16: 991-1006.
-
(2010)
RNA
, vol.16
, pp. 991-1006
-
-
Git, A.1
Dvinge, H.2
Salmon-Divon, M.3
Osborne, M.4
Kutter, C.5
-
47
-
-
70350088369
-
Quantitative miRNA expression analysis: comparing microarrays with next-generation sequencing
-
Willenbrock H, Salomon J, Sokilde R, Barken KB, Hansen TN, et al. (2009) Quantitative miRNA expression analysis: comparing microarrays with next-generation sequencing. RNA 15: 2028-2034.
-
(2009)
RNA
, vol.15
, pp. 2028-2034
-
-
Willenbrock, H.1
Salomon, J.2
Sokilde, R.3
Barken, K.B.4
Hansen, T.N.5
-
48
-
-
30744468557
-
Evidence that miRNAs are different from other RNAs
-
Zhang BH, Pan XP, Cox SB, Cobb GP, Anderson TA, (2006) Evidence that miRNAs are different from other RNAs. Cell Mol Life Sci 63: 246-254.
-
(2006)
Cell Mol Life Sci
, vol.63
, pp. 246-254
-
-
Zhang, B.H.1
Pan, X.P.2
Cox, S.B.3
Cobb, G.P.4
Anderson, T.A.5
-
49
-
-
22144457368
-
Antiquity of microRNAs and their targets in land plants
-
Axtell MJ, Bartel DP, (2005) Antiquity of microRNAs and their targets in land plants. Plant Cell 17: 1658-1673.
-
(2005)
Plant Cell
, vol.17
, pp. 1658-1673
-
-
Axtell, M.J.1
Bartel, D.P.2
-
50
-
-
0035955374
-
Identification of novel genes coding for small expressed RNAs
-
Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T, (2001) Identification of novel genes coding for small expressed RNAs. Science 294: 853-858.
-
(2001)
Science
, vol.294
, pp. 853-858
-
-
Lagos-Quintana, M.1
Rauhut, R.2
Lendeckel, W.3
Tuschl, T.4
-
51
-
-
0035955366
-
An extensive class of small RNAs in Caenorhabditis elegans
-
Lee RC, Ambros V, (2001) An extensive class of small RNAs in Caenorhabditis elegans. Science 294: 862-864.
-
(2001)
Science
, vol.294
, pp. 862-864
-
-
Lee, R.C.1
Ambros, V.2
-
52
-
-
57749110646
-
The Arabidopsis NFYA5 transcription factor is regulated transcriptionally and posttranscriptionally to promote drought resistance
-
Li WX, Oono Y, Zhu J, He XJ, Wu JM, et al. (2008) The Arabidopsis NFYA5 transcription factor is regulated transcriptionally and posttranscriptionally to promote drought resistance. Plant Cell 20: 2238-2251.
-
(2008)
Plant Cell
, vol.20
, pp. 2238-2251
-
-
Li, W.X.1
Oono, Y.2
Zhu, J.3
He, X.J.4
Wu, J.M.5
-
53
-
-
33846537402
-
Identification of drought-induced microRNAs in rice
-
Zhao BT, Liang RQ, Ge LF, Li W, Xiao HS, et al. (2007) Identification of drought-induced microRNAs in rice. Biochem Biophys Res Commun 354: 585-590.
-
(2007)
Biochem Biophys Res Commun
, vol.354
, pp. 585-590
-
-
Zhao, B.T.1
Liang, R.Q.2
Ge, L.F.3
Li, W.4
Xiao, H.S.5
-
54
-
-
47249095055
-
Stress-responsive microRNAs in Populus
-
Lu S, Sun YH, Chiang VL, (2008) Stress-responsive microRNAs in Populus. Plant J 55: 131-151.
-
(2008)
Plant J
, vol.55
, pp. 131-151
-
-
Lu, S.1
Sun, Y.H.2
Chiang, V.L.3
-
55
-
-
65349110326
-
Members of miR-169 family are induced by high salinity and transiently inhibit the NF-YA transcription factor
-
Zhao B, Ge L, Liang R, Li W, Ruan K, et al. (2009) Members of miR-169 family are induced by high salinity and transiently inhibit the NF-YA transcription factor. BMC Mol Biol 10: 29.
-
(2009)
BMC Mol Biol
, vol.10
, pp. 29
-
-
Zhao, B.1
Ge, L.2
Liang, R.3
Li, W.4
Ruan, K.5
-
56
-
-
57749199958
-
Differential expression of miRNAs in response to salt stress in maize roots
-
Ding D, Zhang L, Wang H, Liu Z, Zhang Z, et al. (2009) Differential expression of miRNAs in response to salt stress in maize roots. Ann Bot 103: 29-38.
-
(2009)
Ann Bot
, vol.103
, pp. 29-38
-
-
Ding, D.1
Zhang, L.2
Wang, H.3
Liu, Z.4
Zhang, Z.5
-
57
-
-
55049118172
-
Identification of cold-inducible microRNAs in plants by transcriptome analysis
-
Zhou X, Wang G, Sutoh K, Zhu JK, Zhang W, (2008) Identification of cold-inducible microRNAs in plants by transcriptome analysis. Biochim Biophys Acta 1779: 780-788.
-
(2008)
Biochim Biophys Acta
, vol.1779
, pp. 780-788
-
-
Zhou, X.1
Wang, G.2
Sutoh, K.3
Zhu, J.K.4
Zhang, W.5
-
58
-
-
33747505089
-
Posttranscriptional induction of two Cu/Zn superoxide dismutase genes in Arabidopsis is mediated by downregulation of miR398 and important for oxidative stress tolerance
-
Sunkar R, Kapoor A, Zhu JK, (2006) Posttranscriptional induction of two Cu/Zn superoxide dismutase genes in Arabidopsis is mediated by downregulation of miR398 and important for oxidative stress tolerance. Plant Cell 18: 2051-2065.
-
(2006)
Plant Cell
, vol.18
, pp. 2051-2065
-
-
Sunkar, R.1
Kapoor, A.2
Zhu, J.K.3
-
59
-
-
61349171237
-
Biotic and abiotic stress down-regulate miR398 expression in Arabidopsis
-
Jagadeeswaran G, Saini A, Sunkar R, (2009) Biotic and abiotic stress down-regulate miR398 expression in Arabidopsis. Planta 229: 1009-1014.
-
(2009)
Planta
, vol.229
, pp. 1009-1014
-
-
Jagadeeswaran, G.1
Saini, A.2
Sunkar, R.3
-
60
-
-
79954606171
-
Identification and analysis of seven H2O2-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica)
-
Li T, Li H, Zhang YX, Liu JY, (2010) Identification and analysis of seven H2O2-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica). Nucleic Acids Res 39: 2821-2833.
-
(2010)
Nucleic Acids Res
, vol.39
, pp. 2821-2833
-
-
Li, T.1
Li, H.2
Zhang, Y.X.3
Liu, J.Y.4
-
61
-
-
70350619486
-
UV-B-responsive microRNAs in Populus tremula
-
Jia X, Ren L, Chen QJ, Li R, Tang G, (2009) UV-B-responsive microRNAs in Populus tremula. Journal of Plant Physiology 166: 2046-2057.
-
(2009)
Journal of Plant Physiology
, vol.166
, pp. 2046-2057
-
-
Jia, X.1
Ren, L.2
Chen, Q.J.3
Li, R.4
Tang, G.5
-
62
-
-
76049126414
-
miR398 and miR408 are up-regulated in response to water deficit in Medicago truncatula
-
Trindade I, Capitão C, Dalmay T, Fevereiro M, Santos D, (2010) miR398 and miR408 are up-regulated in response to water deficit in Medicago truncatula. Planta 231: 705-716.
-
(2010)
Planta
, vol.231
, pp. 705-716
-
-
Trindade, I.1
Capitão, C.2
Dalmay, T.3
Fevereiro, M.4
Santos, D.5
-
63
-
-
67650578441
-
Conserved and novel miRNAs in the legume Phaseolus vulgaris in response to stress
-
Arenas-Huertero C, Perez B, Rabanal F, Blanco-Melo D, De la Rosa C, et al. (2009) Conserved and novel miRNAs in the legume Phaseolus vulgaris in response to stress. Plant Mol Biol 70: 385-401.
-
(2009)
Plant Mol Biol
, vol.70
, pp. 385-401
-
-
Arenas-Huertero, C.1
Perez, B.2
Rabanal, F.3
Blanco-Melo, D.4
de la Rosa, C.5
-
64
-
-
60149086351
-
Origin, Biogenesis, and Activity of Plant MicroRNAs
-
Olivier V, (2009) Origin, Biogenesis, and Activity of Plant MicroRNAs. Cell 136: 669-687.
-
(2009)
Cell
, vol.136
, pp. 669-687
-
-
Olivier, V.1
-
65
-
-
43149096961
-
In silico identification of conserved microRNAs in large number of diverse plant species
-
Sunkar R, Jagadeeswaran G, (2008) In silico identification of conserved microRNAs in large number of diverse plant species. BMC Plant Biol 8: 37-50.
-
(2008)
BMC Plant Biol
, vol.8
, pp. 37-50
-
-
Sunkar, R.1
Jagadeeswaran, G.2
-
66
-
-
79960563587
-
Identification of drought-responsive microRNAs in Medicago truncatula by genome-wide high-throughput sequencing
-
Wang T, Chen L, Zhao M, Tian Q, Zhang WH, (2011) Identification of drought-responsive microRNAs in Medicago truncatula by genome-wide high-throughput sequencing. BMC Genomics 12: 367.
-
(2011)
BMC Genomics
, vol.12
, pp. 367
-
-
Wang, T.1
Chen, L.2
Zhao, M.3
Tian, Q.4
Zhang, W.H.5
-
67
-
-
77958031243
-
Genome-wide identification and analysis of drought-responsive microRNAs in Oryza sativa
-
Zhou L, Liu Y, Liu Z, Kong D, Duan M, et al. (2010) Genome-wide identification and analysis of drought-responsive microRNAs in Oryza sativa. J Exp Bot 61: 4157-4168.
-
(2010)
J Exp Bot
, vol.61
, pp. 4157-4168
-
-
Zhou, L.1
Liu, Y.2
Liu, Z.3
Kong, D.4
Duan, M.5
-
68
-
-
79960503618
-
Genome-wide characterization of new and drought stress responsive microRNAs in Populus euphratica
-
Li B, Qin Y, Duan H, Yin W, Xia X, (2011) Genome-wide characterization of new and drought stress responsive microRNAs in Populus euphratica. J Exp Bot 62: 3765-3779.
-
(2011)
J Exp Bot
, vol.62
, pp. 3765-3779
-
-
Li, B.1
Qin, Y.2
Duan, H.3
Yin, W.4
Xia, X.5
-
69
-
-
80052852157
-
Identification and comparative analysis of drought-associated microRNAs in two cowpea genotypes
-
Barrera-Figueroa BE, Gao L, Diop NN, Wu Z, Ehlers JD, et al. (2011) Identification and comparative analysis of drought-associated microRNAs in two cowpea genotypes. BMC Plant Biol 11: 127.
-
(2011)
BMC Plant Biol
, vol.11
, pp. 127
-
-
Barrera-Figueroa, B.E.1
Gao, L.2
Diop, N.N.3
Wu, Z.4
Ehlers, J.D.5
-
70
-
-
73649133268
-
A genome-wide characterization of microRNA genes in maize
-
Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, et al. (2009) A genome-wide characterization of microRNA genes in maize. PLoS Genet 5 (11) (): e1000716.
-
(2009)
PLoS Genet
, vol.5
, Issue.11
-
-
Zhang, L.1
Chia, J.M.2
Kumari, S.3
Stein, J.C.4
Liu, Z.5
-
71
-
-
79951941475
-
miRNA expression patterns of Triticum dicoccoides in response to shock drought stress
-
Kantar M, Lucas SJ, Budak H, (2011) miRNA expression patterns of Triticum dicoccoides in response to shock drought stress. Planta 233: 471-484.
-
(2011)
Planta
, vol.233
, pp. 471-484
-
-
Kantar, M.1
Lucas, S.J.2
Budak, H.3
-
72
-
-
76049126414
-
miR398 and miR408 are up-regulated in response to water deficit in Medicago truncatula
-
Trindade I, Capitao C, Dalmay T, Fevereiro MP, Santos DM, (2010) miR398 and miR408 are up-regulated in response to water deficit in Medicago truncatula. Planta 231: 705-716.
-
(2010)
Planta
, vol.231
, pp. 705-716
-
-
Trindade, I.1
Capitao, C.2
Dalmay, T.3
Fevereiro, M.P.4
Santos, D.M.5
-
73
-
-
42049098645
-
Plant genetics: the blue revolution, drop by drop, gene by gene
-
Pennisi E, (2008) Plant genetics: the blue revolution, drop by drop, gene by gene. Science 320: 171-173.
-
(2008)
Science
, vol.320
, pp. 171-173
-
-
Pennisi, E.1
-
74
-
-
78049275325
-
MicroRNAs with macro-effects on plant stress responses
-
Sunkar R, (2010) MicroRNAs with macro-effects on plant stress responses. Semin Cell Dev Biol 21: 805-811.
-
(2010)
Semin Cell Dev Biol
, vol.21
, pp. 805-811
-
-
Sunkar, R.1
-
75
-
-
77958031243
-
Genome-wide identification and analysis of drought-responsive microRNAs in Oryza sativa
-
Zhou L, Liu Y, Liu Z, Kong D, Duan M, et al. (2010) Genome-wide identification and analysis of drought-responsive microRNAs in Oryza sativa. J Exp Bot 61: 4157-4168.
-
(2010)
J Exp Bot
, vol.61
, pp. 4157-4168
-
-
Zhou, L.1
Liu, Y.2
Liu, Z.3
Kong, D.4
Duan, M.5
-
76
-
-
81155134417
-
Identification and Characterization of microRNAs from Peanut (Arachis hypogaea L.) by High-Throughput Sequencing
-
Chi X, Yang Q, Chen X, Wang J, Pan L, et al. (2011) Identification and Characterization of microRNAs from Peanut (Arachis hypogaea L.) by High-Throughput Sequencing. PLoS ONE 6 (11) (): e27530.
-
(2011)
PLoS ONE
, vol.6
, Issue.11
-
-
Chi, X.1
Yang, Q.2
Chen, X.3
Wang, J.4
Pan, L.5
-
77
-
-
81555230500
-
Characterization of the stress associated microRNAs in Glycine max by deep sequencing
-
Li H, Dong Y, Yin H, Wang N, Yang J, et al. (2011) Characterization of the stress associated microRNAs in Glycine max by deep sequencing. BMC Plant Biol 11: 170-81.
-
(2011)
BMC Plant Biol
, vol.11
, pp. 170-181
-
-
Li, H.1
Dong, Y.2
Yin, H.3
Wang, N.4
Yang, J.5
-
78
-
-
79955841150
-
Sequencing-Based Approaches Reveal Low Ambient Temperature-Responsive and Tissue-Specific MicroRNAs in Phalaenopsis Orchid
-
An F-M, Hsiao S-R, Chan M-T, (2011) Sequencing-Based Approaches Reveal Low Ambient Temperature-Responsive and Tissue-Specific MicroRNAs in Phalaenopsis Orchid. PLoS ONE 6 (5) (): e18937.
-
(2011)
PLoS ONE
, vol.6
, Issue.5
-
-
An, F.-M.1
Hsiao, S.-R.2
Chan, M.-T.3
-
79
-
-
84858980069
-
Identification of microRNAs from Amur grapes (Vitis amurensis Rupr.) by deep sequencing and analysis of microRNA variations with bioinformatics
-
Wang C, Han J, Liu C, Korir NK, Kayesh E, et al. (2012) Identification of microRNAs from Amur grapes (Vitis amurensis Rupr.) by deep sequencing and analysis of microRNA variations with bioinformatics. BMC Genomics 13: 122.
-
(2012)
BMC Genomics
, vol.13
, pp. 122
-
-
Wang, C.1
Han, J.2
Liu, C.3
Korir, N.K.4
Kayesh, E.5
-
80
-
-
77958031243
-
Genome-wide identification and analysis of drought-responsive microRNAs in Oryza sativa
-
Zhou L, Liu Y, Liu Z, Kong D, Duan M, et al. (2010) Genome-wide identification and analysis of drought-responsive microRNAs in Oryza sativa. J Exp Bot 61: 4157-4168.
-
(2010)
J Exp Bot
, vol.61
, pp. 4157-4168
-
-
Zhou, L.1
Liu, Y.2
Liu, Z.3
Kong, D.4
Duan, M.5
-
81
-
-
33846926826
-
ABA induction of miR159 controls transcript levels of two MYB factors during Arabidopsis seed germination
-
Reyes JL, Chua NH, (2007) ABA induction of miR159 controls transcript levels of two MYB factors during Arabidopsis seed germination. Plant J 49: 592-606.
-
(2007)
Plant J
, vol.49
, pp. 592-606
-
-
Reyes, J.L.1
Chua, N.H.2
-
82
-
-
77956706698
-
Identification and characterization of a novel miR159 target not related to MYB in tomato
-
Buxdorf K, Hendelman A, Stav R, Lapidot M, Ori N, et al. (2010) Identification and characterization of a novel miR159 target not related to MYB in tomato. Planta 232: 1009-1022.
-
(2010)
Planta
, vol.232
, pp. 1009-1022
-
-
Buxdorf, K.1
Hendelman, A.2
Stav, R.3
Lapidot, M.4
Ori, N.5
-
83
-
-
2942672580
-
Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
-
Jones-Rhoades MW, Bartel DP, (2004) Computational identification of plant microRNAs and their targets, including a stress-induced miRNA. Mol Cell 14: 787-799.
-
(2004)
Mol Cell
, vol.14
, pp. 787-799
-
-
Jones-Rhoades, M.W.1
Bartel, D.P.2
-
84
-
-
84870780257
-
Role of miRNAs in Seed Development
-
In: R. Sunkar, editor
-
Ruth CM, Cristina MA, Hiro N (2012) Role of miRNAs in Seed Development. In: R. Sunkar, editor. MicroRNAs in Plant Development and Stress Responses, Signaling and Communication in Plants. pp. 109-121.
-
(2012)
MicroRNAs in Plant Development and Stress Responses, Signaling and Communication in Plants
, pp. 109-121
-
-
Ruth, C.M.1
Cristina, M.A.2
Hiro, N.3
-
85
-
-
77951013891
-
Reactive oxygen species homeostasis and signalling during drought and salinity stresses
-
Miller G, Suzuki N, Ciftci-Yilmaz S, Mittler R, (2010) Reactive oxygen species homeostasis and signalling during drought and salinity stresses. Plant Cell Environ 33: 453-467.
-
(2010)
Plant Cell Environ
, vol.33
, pp. 453-467
-
-
Miller, G.1
Suzuki, N.2
Ciftci-Yilmaz, S.3
Mittler, R.4
-
86
-
-
0002410712
-
Plant regeneration from cotyledons of Prunus persica, Prunus domestica, and Prunus cerasus
-
Mante S, Scorza R, Cordts JM, (1989) Plant regeneration from cotyledons of Prunus persica, Prunus domestica, and Prunus cerasus. Plant Cell Tiss Org 19: 1-11.
-
(1989)
Plant Cell Tiss Org
, vol.19
, pp. 1-11
-
-
Mante, S.1
Scorza, R.2
Cordts, J.M.3
-
87
-
-
0042121256
-
Mfold web server for nucleic acid folding and hybridization prediction
-
Zuker M, (2003) Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 31: 3406-3415.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3406-3415
-
-
Zuker, M.1
-
88
-
-
17444430392
-
microRNA-directed phasing during trans-acting siRNA biogenesis in plants
-
Allen E, Xie Z, Gustafson AM, Carrington JC, (2005) microRNA-directed phasing during trans-acting siRNA biogenesis in plants. Cell 121: 207-221.
-
(2005)
Cell
, vol.121
, pp. 207-221
-
-
Allen, E.1
Xie, Z.2
Gustafson, A.M.3
Carrington, J.C.4
-
89
-
-
45549089420
-
High-throughput functional annotation and data mining with the Blast2GO suite
-
Götz S, García-Gómez JM, Terol J, Williams TD, Nagaraj SH, et al. (2008) High-throughput functional annotation and data mining with the Blast2GO suite. Nucleic Acids Res 36: 3420-3435.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 3420-3435
-
-
Götz, S.1
García-Gómez, J.M.2
Terol, J.3
Williams, T.D.4
Nagaraj, S.H.5
-
90
-
-
34547588704
-
KAAS: an automatic genome annotation and pathway reconstruction server
-
Moriya Y, Itoh M, Okuda S, Yoshizawa AC, Kanehisa M, (2007) KAAS: an automatic genome annotation and pathway reconstruction server. Nucleic Acids Res 35: W182-185.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Moriya, Y.1
Itoh, M.2
Okuda, S.3
Yoshizawa, A.C.4
Kanehisa, M.5
|