메뉴 건너뛰기




Volumn 31, Issue 12, 2012, Pages 2151-2163

Selection and validation of suitable reference genes for miRNA expression normalization by quantitative RT-PCR in citrus somatic embryogenic and adult tissues

Author keywords

Citrus; MicroRNA; qRT PCR; Reference gene; Somatic embryogenesis

Indexed keywords

CITRUS; EMBRYOPHYTA; TRACHEOPHYTA;

EID: 84869093351     PISSN: 07217714     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00299-012-1325-x     Document Type: Article
Times cited : (74)

References (60)
  • 1
    • 3442876969 scopus 로고    scopus 로고
    • Normalization of real-time quantitative reverse transcription-PCR data: a model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets
    • Andersen CL, Jensen JL, Orntoft TF (2004) Normalization of real-time quantitative reverse transcription-PCR data: a model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets. Cancer Res 64: 5245-5250.
    • (2004) Cancer Res , vol.64 , pp. 5245-5250
    • Andersen, C.L.1    Jensen, J.L.2    Orntoft, T.F.3
  • 2
    • 84859701141 scopus 로고    scopus 로고
    • Validation of reference genes for RT-qPCR normalization in common bean during biotic and abiotic stresses
    • Borges A, Tsai SM, Caldas DGG (2012) Validation of reference genes for RT-qPCR normalization in common bean during biotic and abiotic stresses. Plant Cell Rep 31: 827-838.
    • (2012) Plant Cell Rep , vol.31 , pp. 827-838
    • Borges, A.1    Tsai, S.M.2    Caldas, D.G.G.3
  • 4
    • 77950632672 scopus 로고    scopus 로고
    • Phloem small RNAs, nutrient stress responses, and systemic mobility
    • Buhtz A, Pieritz J, Springer F, Kehr J (2010) Phloem small RNAs, nutrient stress responses, and systemic mobility. BMC Plant Biol 10: 64.
    • (2010) BMC Plant Biol , vol.10 , pp. 64
    • Buhtz, A.1    Pieritz, J.2    Springer, F.3    Kehr, J.4
  • 6
    • 77953083329 scopus 로고    scopus 로고
    • Reference gene selection for real-time quantitative polymerase chain reaction normalization in "Swingle" citrumelo under drought stress
    • Carvalho K, de Campos MKF, Pereira LFP, Vieira LGE (2010) Reference gene selection for real-time quantitative polymerase chain reaction normalization in "Swingle" citrumelo under drought stress. Anal Biochem 402: 197-199.
    • (2010) Anal Biochem , vol.402 , pp. 197-199
    • Carvalho, K.1    de Campos, M.K.F.2    Pereira, L.F.P.3    Vieira, L.G.E.4
  • 7
    • 84861012383 scopus 로고    scopus 로고
    • Evaluation of candidate reference genes for gene expression normalization in Brassica juncea using real time quantitative RT-PCR
    • Chandna R, Augustine R, Bisht NC (2012) Evaluation of candidate reference genes for gene expression normalization in Brassica juncea using real time quantitative RT-PCR. PLoS One 7: e36918.
    • (2012) PLoS One , vol.7
    • Chandna, R.1    Augustine, R.2    Bisht, N.C.3
  • 8
    • 77951587943 scopus 로고    scopus 로고
    • MiRNA expression profiling to identify and validate reference genes for relative quantification in colorectal cancer
    • Chang KH, Mestdagh P, Vandesompele J, Kerin MJ, Miller N (2010) MiRNA expression profiling to identify and validate reference genes for relative quantification in colorectal cancer. BMC Cancer 10: 173.
    • (2010) BMC Cancer , vol.10 , pp. 173
    • Chang, K.H.1    Mestdagh, P.2    Vandesompele, J.3    Kerin, M.J.4    Miller, N.5
  • 9
    • 70350227275 scopus 로고    scopus 로고
    • Small RNAs and their roles in plant development
    • Chen XM (2009) Small RNAs and their roles in plant development. Annu Rev Cell Dev Biol 35: 21-44.
    • (2009) Annu Rev Cell Dev Biol , vol.35 , pp. 21-44
    • Chen, X.M.1
  • 11
    • 51349111360 scopus 로고    scopus 로고
    • Identification of suitable endogenous control genes for microRNA gene expression analysis in human breast cancer
    • Davoren PA, McNeill RE, Lowery AJ, Kerin MJ, Miller N (2008) Identification of suitable endogenous control genes for microRNA gene expression analysis in human breast cancer. BMC Mol Biol 9: 76.
    • (2008) BMC Mol Biol , vol.9 , pp. 76
    • Davoren, P.A.1    McNeill, R.E.2    Lowery, A.J.3    Kerin, M.J.4    Miller, N.5
  • 12
    • 84870427743 scopus 로고    scopus 로고
    • Evaluation of reference genes for quantitative PCR analysis during somatic embryogenesis in conifers
    • de Vega-Bartol J, Santos RR, Simões M, Miguel C (2011) Evaluation of reference genes for quantitative PCR analysis during somatic embryogenesis in conifers. BMC Proc 5(Suppl 7): O44.
    • (2011) BMC Proc , vol.5 , Issue.SUPPL. 7
    • de Vega-Bartol, J.1    Santos, R.R.2    Simões, M.3    Miguel, C.4
  • 14
    • 79960260124 scopus 로고    scopus 로고
    • Microarray-based analysis of cadmium-responsive microRNAs in rice (Oryza sativa)
    • Ding YF, Chen Z, Zhu C (2011) Microarray-based analysis of cadmium-responsive microRNAs in rice (Oryza sativa). J Exp Bot 62: 3563-3573.
    • (2011) J Exp Bot , vol.62 , pp. 3563-3573
    • Ding, Y.F.1    Chen, Z.2    Zhu, C.3
  • 15
    • 75149178719 scopus 로고    scopus 로고
    • Application of housekeeping npcRNAs for quantitative expression analysis of human transcriptome by real-time PCR
    • Galiveti CR, Rozhdestvensky TS, Brosius J, Lehrach H, Konthur Z (2010) Application of housekeeping npcRNAs for quantitative expression analysis of human transcriptome by real-time PCR. RNA 16: 450-461.
    • (2010) Rna , vol.16 , pp. 450-461
    • Galiveti, C.R.1    Rozhdestvensky, T.S.2    Brosius, J.3    Lehrach, H.4    Konthur, Z.5
  • 17
    • 78650734635 scopus 로고    scopus 로고
    • Identification of suitable reference genes for normalization of qPCR data in comparative transcriptomics analyses in the Triticeae
    • Gimenez MJ, Piston F, Atienza SG (2011) Identification of suitable reference genes for normalization of qPCR data in comparative transcriptomics analyses in the Triticeae. Planta 233: 163-173.
    • (2011) Planta , vol.233 , pp. 163-173
    • Gimenez, M.J.1    Piston, F.2    Atienza, S.G.3
  • 19
    • 26644438574 scopus 로고    scopus 로고
    • Evaluation of control transcripts in real-time RT-PCR expression analysis during maritime pine embryogenesis
    • Goncalves S, Cairney J, Maroco J, Oliveira MM, Miguel C (2005) Evaluation of control transcripts in real-time RT-PCR expression analysis during maritime pine embryogenesis. Planta 222: 556-563.
    • (2005) Planta , vol.222 , pp. 556-563
    • Goncalves, S.1    Cairney, J.2    Maroco, J.3    Oliveira, M.M.4    Miguel, C.5
  • 20
    • 76149119173 scopus 로고    scopus 로고
    • Citrus transgenics: current status and prospects
    • Guo WW, Li DL, Duan YX (2007) Citrus transgenics: current status and prospects. Transgenic Plant J 1: 202-209.
    • (2007) Transgenic Plant J , vol.1 , pp. 202-209
    • Guo, W.W.1    Li, D.L.2    Duan, Y.X.3
  • 27
    • 78751490524 scopus 로고    scopus 로고
    • miR-ID: a novel, circularization-based platform for detection of microRNAs
    • Kumar P, Johnston BH, Kazakov SA (2011) miR-ID: a novel, circularization-based platform for detection of microRNAs. RNA 17: 365-380.
    • (2011) Rna , vol.17 , pp. 365-380
    • Kumar, P.1    Johnston, B.H.2    Kazakov, S.A.3
  • 29
    • 83055184168 scopus 로고    scopus 로고
    • snoU6 and 5S RNAs are not reliable miRNA reference genes in neuronal differentiation
    • Lim QE, Zhou L, Ho YK, Wan G, Too HP (2011) snoU6 and 5S RNAs are not reliable miRNA reference genes in neuronal differentiation. Neuroscience 199: 32-43.
    • (2011) Neuroscience , vol.199 , pp. 32-43
    • Lim, Q.E.1    Zhou, L.2    Ho, Y.K.3    Wan, G.4    Too, H.P.5
  • 30
    • 77649341683 scopus 로고    scopus 로고
    • Reference gene selection for qPCR analysis during somatic embryogenesis in longan tree
    • Lin YL, Lai ZX (2010) Reference gene selection for qPCR analysis during somatic embryogenesis in longan tree. Plant Sci 178: 359-365.
    • (2010) Plant Sci , vol.178 , pp. 359-365
    • Lin, Y.L.1    Lai, Z.X.2
  • 32
    • 34547214644 scopus 로고    scopus 로고
    • Efficient isolation of RNA from fruit peel and pulp of ripening navel orange (Citrus sinensis Osbeck)
    • Liu Y, Liu Q, Tao NG, Deng XX (2006) Efficient isolation of RNA from fruit peel and pulp of ripening navel orange (Citrus sinensis Osbeck). J Huazhong Agric Univ 25: 300-304.
    • (2006) J Huazhong Agric Univ , vol.25 , pp. 300-304
    • Liu, Y.1    Liu, Q.2    Tao, N.G.3    Deng, X.X.4
  • 33
    • 40049091938 scopus 로고    scopus 로고
    • A novel bud mutation that confers abnormal patterns of lycopene accumulation in sweet orange fruit (Citrus sinensis L. Osbeck)
    • Liu Q, Xu J, Liu Y, Zhao X, Deng X, Guo L, Gu J (2007) A novel bud mutation that confers abnormal patterns of lycopene accumulation in sweet orange fruit (Citrus sinensis L. Osbeck). J Exp Bot 58: 4161-4171.
    • (2007) J Exp Bot , vol.58 , pp. 4161-4171
    • Liu, Q.1    Xu, J.2    Liu, Y.3    Zhao, X.4    Deng, X.5    Guo, L.6    Gu, J.7
  • 35
    • 77649159712 scopus 로고    scopus 로고
    • Validation of reference genes for gene expression analysis in chicory (Cichorium intybus) using quantitative real-time PCR
    • Maroufi A, van Bockstaele E, De Loose M (2010) Validation of reference genes for gene expression analysis in chicory (Cichorium intybus) using quantitative real-time PCR. BMC Mol Biol 11: 15.
    • (2010) BMC Mol Biol , vol.11 , pp. 15
    • Maroufi, A.1    van Bockstaele, E.2    de Loose, M.3
  • 37
    • 78149407836 scopus 로고    scopus 로고
    • Normalization strategies for microRNA profiling experiments: a 'normal' way to a hidden layer of complexity?
    • Meyer SU, Pfaffl MW, Ulbrich SE (2010) Normalization strategies for microRNA profiling experiments: a 'normal' way to a hidden layer of complexity? Biotechnol Lett 32: 1777-1788.
    • (2010) Biotechnol Lett , vol.32 , pp. 1777-1788
    • Meyer, S.U.1    Pfaffl, M.W.2    Ulbrich, S.E.3
  • 39
    • 84155189115 scopus 로고    scopus 로고
    • Characterization of genomic sequence showing strong association with polyembryony among diverse Citrus species and cultivars, and its synteny with Vitis and Populus
    • Nakano M, Shimada T, Endo T, Fujii H, Nesumi H, Kita M, Ebina M, Shimizu T, Omura M (2012) Characterization of genomic sequence showing strong association with polyembryony among diverse Citrus species and cultivars, and its synteny with Vitis and Populus. Plant Sci 183: 131-142.
    • (2012) Plant Sci , vol.183 , pp. 131-142
    • Nakano, M.1    Shimada, T.2    Endo, T.3    Fujii, H.4    Nesumi, H.5    Kita, M.6    Ebina, M.7    Shimizu, T.8    Omura, M.9
  • 41
    • 42449098100 scopus 로고    scopus 로고
    • Normalization of microRNA expression levels in quantitative RT-PCR assays: identification of suitable reference RNA targets in normal and cancerous human solid tissues
    • Peltier HJ, Latham GJ (2008) Normalization of microRNA expression levels in quantitative RT-PCR assays: identification of suitable reference RNA targets in normal and cancerous human solid tissues. RNA 14: 844-852.
    • (2008) Rna , vol.14 , pp. 844-852
    • Peltier, H.J.1    Latham, G.J.2
  • 42
    • 80054096606 scopus 로고    scopus 로고
    • Differential expression of the microRNAs in superior and inferior spikelets in rice (Oryza sativa)
    • Peng T, Lv Q, Zhang J, Li JZ, Du YX, Zhao QZ (2011) Differential expression of the microRNAs in superior and inferior spikelets in rice (Oryza sativa). J Exp Bot 62: 4943-4954.
    • (2011) J Exp Bot , vol.62 , pp. 4943-4954
    • Peng, T.1    Lv, Q.2    Zhang, J.3    Li, J.Z.4    Du, Y.X.5    Zhao, Q.Z.6
  • 43
    • 26344445799 scopus 로고    scopus 로고
    • Cryostorage of Citrus embryogenic cultures
    • S. M. Jain, P. K. Gupta, and R. J. Newton (Eds.), Dordrecht: Kluwer
    • Pérez RM (2000) Cryostorage of Citrus embryogenic cultures. In: Jain SM, Gupta PK, Newton RJ (eds) Somatic embryogenesis in woody plants, vol 6. Kluwer, Dordrecht, pp 687-705.
    • (2000) Somatic Embryogenesis in Woody Plants , vol.6 , pp. 687-705
    • Pérez, R.M.1
  • 45
    • 84855203889 scopus 로고    scopus 로고
    • Identification of suitable reference genes for real-time RT-PCR normalization in the grapevine-downy mildew pathosystem
    • Selim M, Legay S, Berkelmann-Löhnertz B, Langen G, Kogel KH, Evers D (2012) Identification of suitable reference genes for real-time RT-PCR normalization in the grapevine-downy mildew pathosystem. Plant Cell Rep 31: 205-216.
    • (2012) Plant Cell Rep , vol.31 , pp. 205-216
    • Selim, M.1    Legay, S.2    Berkelmann-Löhnertz, B.3    Langen, G.4    Kogel, K.H.5    Evers, D.6
  • 46
    • 78650516088 scopus 로고    scopus 로고
    • Global expression profiling of rice microRNAs by one-tube stem-loop reverse transcription quantitative PCR revealed important roles of microRNAs in abiotic stress responses
    • Shen JQ, Xie KB, Xiong LZ (2010) Global expression profiling of rice microRNAs by one-tube stem-loop reverse transcription quantitative PCR revealed important roles of microRNAs in abiotic stress responses. Mol Genet Genomics 284: 477-488.
    • (2010) Mol Genet Genomics , vol.284 , pp. 477-488
    • Shen, J.Q.1    Xie, K.B.2    Xiong, L.Z.3
  • 47
    • 79959984920 scopus 로고    scopus 로고
    • Identification of miR-23a as a novel microRNA normalizer for relative quantification in human uterine cervical tissues
    • Shen YM, Li Y, Ye F, Wang FF, Wan XY, Lu WG, Xie X (2011) Identification of miR-23a as a novel microRNA normalizer for relative quantification in human uterine cervical tissues. Exp Mol Med 43: 358-366.
    • (2011) Exp Mol Med , vol.43 , pp. 358-366
    • Shen, Y.M.1    Li, Y.2    Ye, F.3    Wang, F.F.4    Wan, X.Y.5    Lu, W.G.6    Xie, X.7
  • 48
    • 30344456035 scopus 로고    scopus 로고
    • Facile means for quantifying microRNA expression by real-time PCR
    • Shi R, Chiang VL (2005) Facile means for quantifying microRNA expression by real-time PCR. Biotechniques 39: 519-525.
    • (2005) Biotechniques , vol.39 , pp. 519-525
    • Shi, R.1    Chiang, V.L.2
  • 49
    • 77955375546 scopus 로고    scopus 로고
    • Deep sequencing discovery of novel and conserved microRNAs in trifoliate orange (Citrus trifoliata)
    • Song CN, Wang C, Zhang CQ, Korir NK, Yu HP, Ma3 ZQ, Fang JG (2010) Deep sequencing discovery of novel and conserved microRNAs in trifoliate orange (Citrus trifoliata). BMC Genomics 11: 431.
    • (2010) BMC Genomics , vol.11 , pp. 431
    • Song, C.N.1    Wang, C.2    Zhang, C.Q.3    Korir, N.K.4    Yu, H.P.5    Ma3, Z.Q.6    Fang, J.G.7
  • 50
    • 68949217794 scopus 로고    scopus 로고
    • Selection of reliable reference genes for gene expression studies in peach using real-time PCR
    • Tong ZG, Gao ZH, Wang F, Zhou J, Zhang Z (2009) Selection of reliable reference genes for gene expression studies in peach using real-time PCR. BMC Mol Biol 10: 71.
    • (2009) BMC Mol Biol , vol.10 , pp. 71
    • Tong, Z.G.1    Gao, Z.H.2    Wang, F.3    Zhou, J.4    Zhang, Z.5
  • 51
  • 53
    • 38849140922 scopus 로고    scopus 로고
    • Protocol: a highly sensitive RT-PCR method for detection and quantification of microRNAs
    • Varkonyi-Gasic E, Wu R, Wood M, Walton E, Hellens R (2007) Protocol: a highly sensitive RT-PCR method for detection and quantification of microRNAs. Plant Methods 3: 12.
    • (2007) Plant Methods , vol.3 , pp. 12
    • Varkonyi-Gasic, E.1    Wu, R.2    Wood, M.3    Walton, E.4    Hellens, R.5
  • 54
    • 79960563587 scopus 로고    scopus 로고
    • Identification of drought-responsive microRNAs in Medicago truncatula by genome-wide high throughput sequencing
    • Wang TZ, Chen L, Zhao MG, Tian QY, Zhang WH (2011) Identification of drought-responsive microRNAs in Medicago truncatula by genome-wide high throughput sequencing. BMC Genomics 12: 367.
    • (2011) BMC Genomics , vol.12 , pp. 367
    • Wang, T.Z.1    Chen, L.2    Zhao, M.G.3    Tian, Q.Y.4    Zhang, W.H.5
  • 55
    • 84858980069 scopus 로고    scopus 로고
    • Identification of microRNAs from Amur grape (vitis amurensis Rupr.) by deep sequencing and analysis of microRNA variations with bioinformatics
    • Wang C, Han J, Liu CH, Kibet KN, Kayesh E, Shangguan LF, Li XY, Fang JG (2012) Identification of microRNAs from Amur grape (vitis amurensis Rupr.) by deep sequencing and analysis of microRNA variations with bioinformatics. BMC Genomics 13: 122.
    • (2012) BMC Genomics , vol.13 , pp. 122
    • Wang, C.1    Han, J.2    Liu, C.H.3    Kibet, K.N.4    Kayesh, E.5    Shangguan, L.F.6    Li, X.Y.7    Fang, J.G.8
  • 56
    • 83155167613 scopus 로고    scopus 로고
    • Selection and validation of reference genes for miRNA expression studies during porcine pregnancy
    • Wessels JM, Edwards AK, Zettler C, Tayade C (2011) Selection and validation of reference genes for miRNA expression studies during porcine pregnancy. PLoS One 6(12): e28940.
    • (2011) PLoS One , vol.6 , Issue.12
    • Wessels, J.M.1    Edwards, A.K.2    Zettler, C.3    Tayade, C.4
  • 57
    • 79951958197 scopus 로고    scopus 로고
    • Stage and tissue-specific modulation of ten conserved miRNAs and their targets during somatic embryogenesis of Valencia sweet orange
    • Wu XM, Liu MY, Ge XX, Xu Q, Guo WW (2011) Stage and tissue-specific modulation of ten conserved miRNAs and their targets during somatic embryogenesis of Valencia sweet orange. Planta 233: 495-505.
    • (2011) Planta , vol.233 , pp. 495-505
    • Wu, X.M.1    Liu, M.Y.2    Ge, X.X.3    Xu, Q.4    Guo, W.W.5
  • 58
    • 77952611257 scopus 로고    scopus 로고
    • Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type
    • Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng XX (2010) Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type. BMC Genomics 11: 246.
    • (2010) BMC Genomics , vol.11 , pp. 246
    • Xu, Q.1    Liu, Y.2    Zhu, A.3    Wu, X.4    Ye, J.5    Yu, K.6    Guo, W.7    Deng, X.X.8
  • 59
    • 84860322720 scopus 로고    scopus 로고
    • Selection of reference genes for quantitative real-time RT-PCR analysis in citrus
    • Yan JW, Yuan FR, Long GY, Qin L, Deng ZN (2012) Selection of reference genes for quantitative real-time RT-PCR analysis in citrus. Mol Biol Rep 39: 1831-1838.
    • (2012) Mol Biol Rep , vol.39 , pp. 1831-1838
    • Yan, J.W.1    Yuan, F.R.2    Long, G.Y.3    Qin, L.4    Deng, Z.N.5
  • 60
    • 79952698987 scopus 로고    scopus 로고
    • Selection of reliable reference genes for expression studies by reverse transcription quantitative real-time PCR in litchi under different experimental conditions
    • Zhong HY, Chen JW, Li CQ, Chen L, Wu JY, Chen JY, Lu WJ, Li JG (2011) Selection of reliable reference genes for expression studies by reverse transcription quantitative real-time PCR in litchi under different experimental conditions. Plant Cell Rep 30: 641-653.
    • (2011) Plant Cell Rep , vol.30 , pp. 641-653
    • Zhong, H.Y.1    Chen, J.W.2    Li, C.Q.3    Chen, L.4    Wu, J.Y.5    Chen, J.Y.6    Lu, W.J.7    Li, J.G.8


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.