-
1
-
-
0000857494
-
An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database
-
Eng, J. K.; McCormack, A. L.; Yates, J. R. An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database J. Am. Soc. Mass Spectrom. 1994, 5, 976-89
-
(1994)
J. Am. Soc. Mass Spectrom.
, vol.5
, pp. 976-989
-
-
Eng, J.K.1
McCormack, A.L.2
Yates, J.R.3
-
2
-
-
0033434080
-
Probability-based protein identification by searching sequence databases using mass spectrometry data
-
Perkins, D. N.; Pappin, D. J.; Creasy, D. M.; Cottrell, J. S. Probability-based protein identification by searching sequence databases using mass spectrometry data Electrophoresis 1999, 20, 3551-67
-
(1999)
Electrophoresis
, vol.20
, pp. 3551-3567
-
-
Perkins, D.N.1
Pappin, D.J.2
Creasy, D.M.3
Cottrell, J.S.4
-
3
-
-
3142702204
-
TANDEM: Matching proteins with tandem mass spectra
-
Craig, R.; Beavis, R. C. TANDEM: matching proteins with tandem mass spectra Bioinformatics 2004, 20, 1466-7
-
(2004)
Bioinformatics
, vol.20
, pp. 1466-1467
-
-
Craig, R.1
Beavis, R.C.2
-
4
-
-
7044246160
-
Open mass spectrometry search algorithm
-
Geer, L. Y.; Markey, S. P.; Kowalak, J. A.; Wagner, L.; Xu, M.; Maynard, D. M.; Yang, X.; Shi, W.; Bryant, S. H. Open mass spectrometry search algorithm J. Proteome Res. 2004, 3, 958-64
-
(2004)
J. Proteome Res.
, vol.3
, pp. 958-964
-
-
Geer, L.Y.1
Markey, S.P.2
Kowalak, J.A.3
Wagner, L.4
Xu, M.5
Maynard, D.M.6
Yang, X.7
Shi, W.8
Bryant, S.H.9
-
5
-
-
0037174927
-
Peptidomics of the larval Drosophila melanogaster central nervous system
-
Baggerman, G.; Cerstiaens, A.; De Loof, A.; Schoofs, L. Peptidomics of the larval Drosophila melanogaster central nervous system J. Biol. Chem. 2002, 277, 40368-74
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 40368-40374
-
-
Baggerman, G.1
Cerstiaens, A.2
De Loof, A.3
Schoofs, L.4
-
6
-
-
71049141684
-
Snapshot peptidomics of the regulated secretory pathway
-
Sasaki, K.; Satomi, Y.; Takao, T.; Minamino, N. Snapshot peptidomics of the regulated secretory pathway Mol. Cell. Proteomics 2009, 8, 1638-47
-
(2009)
Mol. Cell. Proteomics
, vol.8
, pp. 1638-1647
-
-
Sasaki, K.1
Satomi, Y.2
Takao, T.3
Minamino, N.4
-
7
-
-
80755175376
-
Venom peptide analysis of Vipera ammodytes meridionalis (Viperinae) and Bothrops jararacussu (Crotalinae) demonstrates subfamily-specificity of the peptidome in the family Viperidae
-
Munawar, A.; Trusch, M.; Georgieva, D.; Spencer, P.; Frochaux, V.; Harder, S.; Arni, R. K.; Duhalov, D.; Genov, N.; Schlüter, H.; Betzel, C. Venom peptide analysis of Vipera ammodytes meridionalis (Viperinae) and Bothrops jararacussu (Crotalinae) demonstrates subfamily-specificity of the peptidome in the family Viperidae Mol. Biosyst. 2011, 7, 3298-307
-
(2011)
Mol. Biosyst.
, vol.7
, pp. 3298-3307
-
-
Munawar, A.1
Trusch, M.2
Georgieva, D.3
Spencer, P.4
Frochaux, V.5
Harder, S.6
Arni, R.K.7
Duhalov, D.8
Genov, N.9
Schlüter, H.10
Betzel, C.11
-
8
-
-
34250220722
-
Isolation and characterization of antimicrobial proteins and peptide from chicken liver
-
Li, G.-H.; Mine, Y.; Hincke, M. T.; Nys, Y. Isolation and characterization of antimicrobial proteins and peptide from chicken liver J. Pept. Sci. 2007, 13, 368-78
-
(2007)
J. Pept. Sci.
, vol.13
, pp. 368-378
-
-
Li, G.-H.1
Mine, Y.2
Hincke, M.T.3
Nys, Y.4
-
9
-
-
34547116181
-
Neuropeptidomics strategies for specific and sensitive identification of endogenous peptides
-
Fälth, M.; Sköld, K.; Svensson, M.; Nilsson, A.; Fenyö, D.; Andren, P. E. Neuropeptidomics strategies for specific and sensitive identification of endogenous peptides Mol. Cell. Proteomics 2007, 6, 1188-97
-
(2007)
Mol. Cell. Proteomics
, vol.6
, pp. 1188-1197
-
-
Fälth, M.1
Sköld, K.2
Svensson, M.3
Nilsson, A.4
Fenyö, D.5
Andren, P.E.6
-
11
-
-
30444432702
-
Neuropeptide-processing enzymes: Applications for drug discovery
-
Fricker, L. D. Neuropeptide-processing enzymes: applications for drug discovery AAPS J. 2005, 7, E449-55
-
(2005)
AAPS J.
, vol.7
, pp. 449-455
-
-
Fricker, L.D.1
-
12
-
-
33644879722
-
Peptidomics: Identification and quantification of endogenous peptides in neuroendocrine tissues
-
Fricker, L. D.; Lim, J.; Pan, H.; Che, F. Y. Peptidomics: identification and quantification of endogenous peptides in neuroendocrine tissues Mass Spectrom. Rev. 2006, 25, 327-44
-
(2006)
Mass Spectrom. Rev.
, vol.25
, pp. 327-344
-
-
Fricker, L.D.1
Lim, J.2
Pan, H.3
Che, F.Y.4
-
13
-
-
0043131153
-
Neuropeptides-an overview
-
Hökfelt, T.; Broberger, C.; Xu, Z. Q.; Sergeyev, V.; Ubink, R.; Diez, M. Neuropeptides-an overview Neuropharmacology 2000, 39, 1337-56
-
(2000)
Neuropharmacology
, vol.39
, pp. 1337-1356
-
-
Hökfelt, T.1
Broberger, C.2
Xu, Z.Q.3
Sergeyev, V.4
Ubink, R.5
Diez, M.6
-
14
-
-
0027418132
-
Peptidylglycine alpha-amidating monooxygenase: A multifunctional protein with catalytic, processing, and routing domains
-
Eipper, B. a; Milgram, S. L.; Husten, E. J.; Yun, H. Y.; Mains, R. E. Peptidylglycine alpha-amidating monooxygenase: a multifunctional protein with catalytic, processing, and routing domains Protein Sci. 1993, 2, 489-97
-
(1993)
Protein Sci.
, vol.2
, pp. 489-497
-
-
Eipper, B.A.1
Milgram, S.L.2
Husten, E.J.3
Yun, H.Y.4
Mains, R.E.5
-
15
-
-
3042789073
-
Peptide and protein sequence analysis by electron transfer dissociation mass spectrometry
-
Syka, J. E. P.; Coon, J. J.; Schroeder, M. J.; Shabanowitz, J.; Hunt, D. F. Peptide and protein sequence analysis by electron transfer dissociation mass spectrometry Proc. Natl. Acad. Sci. U.S.A. 2004, 101, 9528-33
-
(2004)
Proc. Natl. Acad. Sci. U.S.A.
, vol.101
, pp. 9528-9533
-
-
Syka, J.E.P.1
Coon, J.J.2
Schroeder, M.J.3
Shabanowitz, J.4
Hunt, D.F.5
-
16
-
-
0035561145
-
Electron capture dissociation of gaseous multiply charged ions by Fourier-transform ion cyclotron resonance
-
McLafferty, F. W.; Horn, D. M.; Breuker, K.; Ge, Y.; Lewis, M. A.; Cerda, B.; Zubarev, R. A.; Carpenter, B. K. Electron capture dissociation of gaseous multiply charged ions by Fourier-transform ion cyclotron resonance J. Am. Soc. Mass Spectrom. 2001, 12, 245-9
-
(2001)
J. Am. Soc. Mass Spectrom.
, vol.12
, pp. 245-249
-
-
McLafferty, F.W.1
Horn, D.M.2
Breuker, K.3
Ge, Y.4
Lewis, M.A.5
Cerda, B.6
Zubarev, R.A.7
Carpenter, B.K.8
-
17
-
-
83655190702
-
Statistical analysis of electron transfer dissociation pairwise fragmentation patterns
-
Li, W.; Song, C.; Bailey, D. J.; Tseng, G. C.; Coon, J. J.; Wysocki, V. H. Statistical analysis of electron transfer dissociation pairwise fragmentation patterns Anal. Chem. 2011, 83, 9540-5
-
(2011)
Anal. Chem.
, vol.83
, pp. 9540-9545
-
-
Li, W.1
Song, C.2
Bailey, D.J.3
Tseng, G.C.4
Coon, J.J.5
Wysocki, V.H.6
-
18
-
-
21044441542
-
Improving protein identification using complementary fragmentation techniques in fourier transform mass spectrometry
-
Nielsen, M. L.; Savitski, M. M.; Zubarev, R. A. Improving protein identification using complementary fragmentation techniques in fourier transform mass spectrometry Mol. Cell. Proteomics 2005, 4, 835-45
-
(2005)
Mol. Cell. Proteomics
, vol.4
, pp. 835-845
-
-
Nielsen, M.L.1
Savitski, M.M.2
Zubarev, R.A.3
-
19
-
-
78650147228
-
The generating function of CID, ETD, and CID/ETD pairs of tandem mass spectra: Applications to database search
-
Kim, S.; Mischerikow, N.; Bandeira, N.; Navarro, J. D.; Wich, L.; Mohammed, S.; Heck, A. J. R.; Pevzner, P. A. The generating function of CID, ETD, and CID/ETD pairs of tandem mass spectra: applications to database search Mol. Cell. Proteomics 2010, 9, 2840-52
-
(2010)
Mol. Cell. Proteomics
, vol.9
, pp. 2840-2852
-
-
Kim, S.1
Mischerikow, N.2
Bandeira, N.3
Navarro, J.D.4
Wich, L.5
Mohammed, S.6
Heck, A.J.R.7
Pevzner, P.A.8
-
20
-
-
84864815807
-
Enhanced peptide identification by electron transfer dissociation using an improved mascot percolator
-
Wright, J.; Collins, M.; Yu, L.; Kall, L.; Brosch, M.; Choudhary, J. S. Enhanced peptide identification by electron transfer dissociation using an improved mascot percolator Mol. Cell. Proteomics 2012, 11, 478-91
-
(2012)
Mol. Cell. Proteomics
, vol.11
, pp. 478-491
-
-
Wright, J.1
Collins, M.2
Yu, L.3
Kall, L.4
Brosch, M.5
Choudhary, J.S.6
-
21
-
-
46849098407
-
Comprehensive comparison of collision induced dissociation and electron transfer dissociation
-
Molina, H.; Matthiesen, R.; Kandasamy, K.; Pandey, A. Comprehensive comparison of collision induced dissociation and electron transfer dissociation Anal. Chem. 2008, 80, 4825-35
-
(2008)
Anal. Chem.
, vol.80
, pp. 4825-4835
-
-
Molina, H.1
Matthiesen, R.2
Kandasamy, K.3
Pandey, A.4
-
22
-
-
84865737357
-
Peptide identification by tandem mass spectrometry with alternate fragmentation modes
-
Guthals, A.; Bandeira, N. Peptide identification by tandem mass spectrometry with alternate fragmentation modes Mol. Cell. Proteomics 2012, 11, 550-7
-
(2012)
Mol. Cell. Proteomics
, vol.11
, pp. 550-557
-
-
Guthals, A.1
Bandeira, N.2
-
23
-
-
56149086397
-
Decision tree-driven tandem mass spectrometry for shotgun proteomics
-
Swaney, D. L.; McAlister, G. C.; Coon, J. J. Decision tree-driven tandem mass spectrometry for shotgun proteomics Nat. Methods 2008, 5, 959-64
-
(2008)
Nat. Methods
, vol.5
, pp. 959-964
-
-
Swaney, D.L.1
McAlister, G.C.2
Coon, J.J.3
-
24
-
-
79955831978
-
Improved peptide identification by targeted fragmentation using CID, HCD and ETD on an LTQ-Orbitrap Velos
-
Frese, C. K.; Altelaar, A. F. M.; Hennrich, M. L.; Nolting, D.; Zeller, M.; Griep-Raming, J.; Heck, A. J. R.; Mohammed, S. Improved peptide identification by targeted fragmentation using CID, HCD and ETD on an LTQ-Orbitrap Velos J. Proteome Res. 2011, 10, 2377-88
-
(2011)
J. Proteome Res.
, vol.10
, pp. 2377-2388
-
-
Frese, C.K.1
Altelaar, A.F.M.2
Hennrich, M.L.3
Nolting, D.4
Zeller, M.5
Griep-Raming, J.6
Heck, A.J.R.7
Mohammed, S.8
-
25
-
-
84864815807
-
Enhanced peptide identification by electron transfer dissociation using an improved Mascot Percolator
-
Wright, J. C.; Collins, M. O.; Yu, L.; Käll, L.; Brosch, M.; Choudhary, J. S. Enhanced peptide identification by electron transfer dissociation using an improved Mascot Percolator Mol. Cell. Proteomics 2012, 11, 478-91
-
(2012)
Mol. Cell. Proteomics
, vol.11
, pp. 478-491
-
-
Wright, J.C.1
Collins, M.O.2
Yu, L.3
Käll, L.4
Brosch, M.5
Choudhary, J.S.6
-
26
-
-
80052485658
-
Effectiveness of CID, HCD, and ETD with FT MS/MS for degradomic- peptidomic analysis: Comparison of peptide identification methods
-
Shen, Y.; Tolić, N.; Xie, F.; Zhao, R.; Purvine, S. O.; Schepmoes, A. a; Moore, R. J.; Anderson, G. a; Smith, R. D. Effectiveness of CID, HCD, and ETD with FT MS/MS for degradomic-peptidomic analysis: comparison of peptide identification methods J. Proteome Res. 2011, 10, 3929-43
-
(2011)
J. Proteome Res.
, vol.10
, pp. 3929-3943
-
-
Shen, Y.1
Tolić, N.2
Xie, F.3
Zhao, R.4
Purvine, S.O.5
Schepmoes, A.A.6
Moore, R.J.7
Anderson, G.A.8
Smith, R.D.9
-
27
-
-
84863053378
-
Improving collision induced dissociation (CID), high energy collision dissociation (HCD), and electron transfer dissociation (ETD) fourier transform MS/MS degradome-peptidome identifications using high accuracy mass information
-
Shen, Y.; Tolić, N.; Purvine, S. O.; Smith, R. D. Improving collision induced dissociation (CID), high energy collision dissociation (HCD), and electron transfer dissociation (ETD) fourier transform MS/MS degradome-peptidome identifications using high accuracy mass information J. Proteome Res. 2012, 11, 668-77
-
(2012)
J. Proteome Res.
, vol.11
, pp. 668-677
-
-
Shen, Y.1
Tolić, N.2
Purvine, S.O.3
Smith, R.D.4
-
28
-
-
84874607230
-
Large-scale identification of endogenous secretory peptides using electron transfer dissociation mass spectrometry
-
Sasaki, K.; Osaki, T.; Minamino, N. Large-scale identification of endogenous secretory peptides using electron transfer dissociation mass spectrometry Mol. Cell. Proteomics 2013, 12, 700-9
-
(2013)
Mol. Cell. Proteomics
, vol.12
, pp. 700-709
-
-
Sasaki, K.1
Osaki, T.2
Minamino, N.3
-
29
-
-
0037442649
-
A method for assessing the statistical significance of mass spectrometry-based protein identifications using general scoring schemes
-
Fenyö, D.; Beavis, R. C. A method for assessing the statistical significance of mass spectrometry-based protein identifications using general scoring schemes Anal. Chem. 2003, 75, 768-74
-
(2003)
Anal. Chem.
, vol.75
, pp. 768-774
-
-
Fenyö, D.1
Beavis, R.C.2
-
30
-
-
78649515263
-
RAId-aPS: MS/MS analysis with multiple scoring functions and spectrum-specific statistics
-
Alves, G.; Ogurtsov, A. Y.; Yu, Y. K. RAId-aPS: MS/MS analysis with multiple scoring functions and spectrum-specific statistics PLoS One 2010, 5, e15438
-
(2010)
PLoS One
, vol.5
, pp. 15438
-
-
Alves, G.1
Ogurtsov, A.Y.2
Yu, Y.K.3
-
32
-
-
0028234758
-
Rapid and accurate estimates of statistical significance for sequence data base searches
-
Waterman, M. S.; Vingron, M. Rapid and accurate estimates of statistical significance for sequence data base searches Proc. Natl. Acad. Sci. U.S.A. 1994, 91, 4625-8
-
(1994)
Proc. Natl. Acad. Sci. U.S.A.
, vol.91
, pp. 4625-4628
-
-
Waterman, M.S.1
Vingron, M.2
-
33
-
-
4644237189
-
Fast and effective prediction of microRNA/target duplexes
-
Rehmsmeier, M.; Steffen, P.; Hochsmann, M.; Giegerich, R. Fast and effective prediction of microRNA/target duplexes RNA 2004, 10, 1507-17
-
(2004)
RNA
, vol.10
, pp. 1507-1517
-
-
Rehmsmeier, M.1
Steffen, P.2
Hochsmann, M.3
Giegerich, R.4
-
34
-
-
84874762979
-
The PRoteomics IDEntifications (PRIDE) database and associated tools: Status in 2013
-
Vizcaíno, J. A.; Coîté, R. G.; Csordas, A.; Dianes, J. A.; Fabregat, A.; Foster, J. M.; Griss, J.; Alpi, E.; Birim, M.; Contell, J.; O'Kelly, G.; Schoenegger, A.; Ovelleiro, D.; Pérez-Riverol, Y.; Reisinger, F.; Ríos, D.; Wang, R.; Hermjakob, H. The PRoteomics IDEntifications (PRIDE) database and associated tools: status in 2013 Nucleic Acids Res. 2013, 41, D1063-9
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. 1063-1069
-
-
Vizcaíno, J.A.1
Coîté, R.G.2
Csordas, A.3
Dianes, J.A.4
Fabregat, A.5
Foster, J.M.6
Griss, J.7
Alpi, E.8
Birim, M.9
Contell, J.10
O'Kelly, G.11
Schoenegger, A.12
Ovelleiro, D.13
Pérez-Riverol, Y.14
Reisinger, F.15
Ríos, D.16
Wang, R.17
Hermjakob, H.18
-
35
-
-
84865737357
-
Peptide identification by tandem mass spectrometry with alternate fragmentation modes
-
Guthals, A.; Bandeira, N. Peptide identification by tandem mass spectrometry with alternate fragmentation modes Mol. Cell. Proteomics 2012, 11, 550-7
-
(2012)
Mol. Cell. Proteomics
, vol.11
, pp. 550-557
-
-
Guthals, A.1
Bandeira, N.2
-
36
-
-
70349135910
-
Spectral clustering in peptidomics studies helps to unravel modification profile of biologically active peptides and enhances peptide identification rate
-
Menschaert, G.; Vandekerckhove, T. T. M.; Landuyt, B.; Hayakawa, E.; Schoofs, L.; Luyten, W.; Van Criekinge, W. Spectral clustering in peptidomics studies helps to unravel modification profile of biologically active peptides and enhances peptide identification rate Proteomics 2009, 9, 4381-8
-
(2009)
Proteomics
, vol.9
, pp. 4381-4388
-
-
Menschaert, G.1
Vandekerckhove, T.T.M.2
Landuyt, B.3
Hayakawa, E.4
Schoofs, L.5
Luyten, W.6
Van Criekinge, W.7
-
37
-
-
79959960525
-
Target-decoy approach and false discovery rate: When things may go wrong
-
Gupta, N.; Bandeira, N.; Keich, U.; Pevzner, P. A. Target-decoy approach and false discovery rate: when things may go wrong J. Am. Soc. Mass Spectrom. 2011, 22, 1111-20
-
(2011)
J. Am. Soc. Mass Spectrom.
, vol.22
, pp. 1111-1120
-
-
Gupta, N.1
Bandeira, N.2
Keich, U.3
Pevzner, P.A.4
-
38
-
-
0020803454
-
Identification in pituitary tissue of a peptide alpha-amidation activity that acts on glycine-extended peptides and requires molecular oxygen, copper, and ascorbic acid
-
Eipper, B. a; Mains, R. E.; Glembotski, C. C. Identification in pituitary tissue of a peptide alpha-amidation activity that acts on glycine-extended peptides and requires molecular oxygen, copper, and ascorbic acid Proc. Natl. Acad. Sci. U.S.A. 1983, 80, 5144-8
-
(1983)
Proc. Natl. Acad. Sci. U.S.A.
, vol.80
, pp. 5144-5148
-
-
Eipper, B.A.1
Mains, R.E.2
Glembotski, C.C.3
-
39
-
-
84862944662
-
A mass spectrometry-based method to screen for α-amidated peptides
-
An, Z.; Chen, Y.; Koomen, J. M.; Merkler, D. J. A mass spectrometry-based method to screen for α-amidated peptides Proteomics 2012, 12, 173-82
-
(2012)
Proteomics
, vol.12
, pp. 173-182
-
-
An, Z.1
Chen, Y.2
Koomen, J.M.3
Merkler, D.J.4
-
40
-
-
33745584056
-
SwePep, a database designed for endogenous peptides and mass spectrometry
-
Fälth, M.; Sköld, K.; Norrman, M.; Svensson, M.; Fenyö, D.; Andren, P. E. SwePep, a database designed for endogenous peptides and mass spectrometry Mol. Cell. Proteomics 2006, 5, 998-1005
-
(2006)
Mol. Cell. Proteomics
, vol.5
, pp. 998-1005
-
-
Fälth, M.1
Sköld, K.2
Norrman, M.3
Svensson, M.4
Fenyö, D.5
Andren, P.E.6
-
41
-
-
33747866382
-
NeuroPred: A tool to predict cleavage sites in neuropeptide precursors and provide the masses of the resulting peptides
-
Southey, B. R.; Amare, A.; Zimmerman, T. a; Rodriguez-Zas, S. L.; Sweedler, J. V NeuroPred: a tool to predict cleavage sites in neuropeptide precursors and provide the masses of the resulting peptides Nucleic Acids Res. 2006, 34, W267-72
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. 267-272
-
-
Southey, B.R.1
Amare, A.2
Zimmerman, T.A.3
Rodriguez-Zas, S.L.4
Sweedler, J.V.5
-
42
-
-
67650817831
-
A python analytical pipeline to identify prohormone precursors and predict prohormone cleavage sites
-
Southey, B. R.; Sweedler, J. V; Rodriguez-Zas, S. L. A python analytical pipeline to identify prohormone precursors and predict prohormone cleavage sites Front. Neuroinf. 2008, 2, 7
-
(2008)
Front. Neuroinf.
, vol.2
, pp. 7
-
-
Southey, B.R.1
Sweedler, J.V.2
Rodriguez-Zas, S.L.3
-
43
-
-
33745005452
-
Analysis of the low molecular weight serum peptidome using ultrafiltration and a hybrid ion trap-Fourier transform mass spectrometer
-
Zheng, X.; Baker, H.; Hancock, W. S. Analysis of the low molecular weight serum peptidome using ultrafiltration and a hybrid ion trap-Fourier transform mass spectrometer J. Chromatogr. A 2006, 1120, 173-84
-
(2006)
J. Chromatogr. A
, vol.1120
, pp. 173-184
-
-
Zheng, X.1
Baker, H.2
Hancock, W.S.3
-
44
-
-
77954573017
-
Analysis of mouse brain peptides using mass spectrometry-based peptidomics: Implications for novel functions ranging from non-classical neuropeptides to microproteins
-
Fricker, L. D. Analysis of mouse brain peptides using mass spectrometry-based peptidomics: implications for novel functions ranging from non-classical neuropeptides to microproteins Mol. BioSyst. 2010, 6, 1355-65
-
(2010)
Mol. BioSyst.
, vol.6
, pp. 1355-1365
-
-
Fricker, L.D.1
-
45
-
-
58149374023
-
Neuropeptidomics of the supraoptic rat nucleus
-
Bora, A.; Annangudi, S. P.; Millet, L. J.; Rubakhin, S. S.; Forbes, A. J.; Kelleher, N. L.; Gillette, M. U.; Sweedler, J. V Neuropeptidomics of the supraoptic rat nucleus J. Proteome Res. 2008, 7, 4992-5003
-
(2008)
J. Proteome Res.
, vol.7
, pp. 4992-5003
-
-
Bora, A.1
Annangudi, S.P.2
Millet, L.J.3
Rubakhin, S.S.4
Forbes, A.J.5
Kelleher, N.L.6
Gillette, M.U.7
Sweedler, J.V.8
-
46
-
-
76149127020
-
A hybrid, de novo based, genome-wide database search approach applied to the sea urchin neuropeptidome
-
Menschaert, G.; Vandekerckhove, T. T. M.; Baggerman, G.; Landuyt, B.; Sweedler, J. V; Schoofs, L.; Luyten, W.; Van Criekinge, W. A hybrid, de novo based, genome-wide database search approach applied to the sea urchin neuropeptidome J. Proteome Res. 2010, 9, 990-6
-
(2010)
J. Proteome Res.
, vol.9
, pp. 990-996
-
-
Menschaert, G.1
Vandekerckhove, T.T.M.2
Baggerman, G.3
Landuyt, B.4
Sweedler, J.V.5
Schoofs, L.6
Luyten, W.7
Van Criekinge, W.8
-
47
-
-
79958012078
-
Gapped spectral dictionaries and their applications for database searches of tandem mass spectra
-
M110.002220
-
Jeong, K.; Kim, S.; Bandeira, N.; Pevzner, P. A. Gapped spectral dictionaries and their applications for database searches of tandem mass spectra Mol. Cell. Proteomics 2011, 10 M110.002220
-
(2011)
Mol. Cell. Proteomics
, vol.10
-
-
Jeong, K.1
Kim, S.2
Bandeira, N.3
Pevzner, P.A.4
-
48
-
-
17444375706
-
Complementary structural information from a tryptic N-linked glycopeptide via electron transfer ion/ion reactions and collision-induced dissociation
-
Hogan, J. M.; Pitteri, S. J.; Chrisman, P. A.; McLuckey, S. A. Complementary structural information from a tryptic N-linked glycopeptide via electron transfer ion/ion reactions and collision-induced dissociation J. Proteome Res. 2005, 4, 628-32
-
(2005)
J. Proteome Res.
, vol.4
, pp. 628-632
-
-
Hogan, J.M.1
Pitteri, S.J.2
Chrisman, P.A.3
McLuckey, S.A.4
-
49
-
-
43549095027
-
Electron capture/transfer versus collisionally activated/induced dissociations: Solo or duet?
-
Zubarev, R. A.; Zubarev, A. R.; Savitski, M. M. Electron capture/transfer versus collisionally activated/induced dissociations: solo or duet? J. Am. Soc. Mass Spectrom. 2008, 19, 753-61
-
(2008)
J. Am. Soc. Mass Spectrom.
, vol.19
, pp. 753-761
-
-
Zubarev, R.A.1
Zubarev, A.R.2
Savitski, M.M.3
-
50
-
-
79958166701
-
Systematic evaluation of alternating CID and ETD fragmentation for phosphorylated peptides
-
Kim, M.-S.; Zhong, J.; Kandasamy, K.; Delanghe, B.; Pandey, A. Systematic evaluation of alternating CID and ETD fragmentation for phosphorylated peptides Proteomics 2011, 11, 2568-72
-
(2011)
Proteomics
, vol.11
, pp. 2568-2572
-
-
Kim, M.-S.1
Zhong, J.2
Kandasamy, K.3
Delanghe, B.4
Pandey, A.5
-
51
-
-
0034856707
-
Peptidomics of the pars intercerebralis-corpus cardiacum complex of the migratory locust Locusta migratoria
-
Clynen, E.; Baggerman, G.; Veelaert, D.; Cerstiaens, A.; Van der Horst, D.; Harthoorn, L.; Derua, R.; Waelkens, E.; De Loof, A.; Schoofs, L. Peptidomics of the pars intercerebralis-corpus cardiacum complex of the migratory locust Locusta migratoria Eur. J. Biochem. 2001, 268, 1929-39
-
(2001)
Eur. J. Biochem.
, vol.268
, pp. 1929-1939
-
-
Clynen, E.1
Baggerman, G.2
Veelaert, D.3
Cerstiaens, A.4
Van Der Horst, D.5
Harthoorn, L.6
Derua, R.7
Waelkens, E.8
De Loof, A.9
Schoofs, L.10
-
52
-
-
58149374023
-
V neuropeptidomics of the supraoptic rat nucleus
-
Bora, A.; Annangudi, S. P.; Millet, L. J.; Rubakhin, S. S.; Forbes, A. J.; Kelleher, N. L.; Gillette, M. U.; Sweedler, J. V neuropeptidomics of the supraoptic rat nucleus J. Proteome Res. 2008, 4992-5003
-
(2008)
J. Proteome Res.
, pp. 4992-5003
-
-
Bora, A.1
Annangudi, S.P.2
Millet, L.J.3
Rubakhin, S.S.4
Forbes, A.J.5
Kelleher, N.L.6
Gillette, M.U.7
Sweedler, J.8
-
53
-
-
80053919693
-
Genomics, transcriptomics, and peptidomics of Daphnia pulex neuropeptides and protein hormones
-
Dircksen, H.; Neupert, S.; Predel, R.; Verleyen, P.; Huybrechts, J.; Strauss, J.; Hauser, F.; Stafflinger, E.; Schneider, M.; Pauwels, K.; Schoofs, L.; Grimmelikhuijzen, C. J. P. Genomics, transcriptomics, and peptidomics of Daphnia pulex neuropeptides and protein hormones J. Proteome Res. 2011, 10, 4478-504
-
(2011)
J. Proteome Res.
, vol.10
, pp. 4478-4504
-
-
Dircksen, H.1
Neupert, S.2
Predel, R.3
Verleyen, P.4
Huybrechts, J.5
Strauss, J.6
Hauser, F.7
Stafflinger, E.8
Schneider, M.9
Pauwels, K.10
Schoofs, L.11
Grimmelikhuijzen, C.J.P.12
-
54
-
-
84864634069
-
Peptidomic analyses of mouse astrocytic cell lines and rat primary cultured astrocytes
-
Yin, P.; Knolhoff, A. M.; Rosenberg, H. J.; Millet, L. J.; Gillette, M. U.; Sweedler, J. V Peptidomic analyses of mouse astrocytic cell lines and rat primary cultured astrocytes J. Proteome Res. 2012, 11, 3965-73
-
(2012)
J. Proteome Res.
, vol.11
, pp. 3965-3973
-
-
Yin, P.1
Knolhoff, A.M.2
Rosenberg, H.J.3
Millet, L.J.4
Gillette, M.U.5
Sweedler, J.V.6
-
55
-
-
33749554743
-
From the genome to the proteome: Uncovering peptides in the Apis brain
-
Hummon, A. B.; Richmond, T. A.; Verleyen, P.; Baggerman, G.; Huybrechts, J.; Ewing, M. A.; Vierstraete, E.; Rodriguez-Zas, S. L.; Schoofs, L.; Robinson, G. E.; Sweedler, J. V From the genome to the proteome: uncovering peptides in the Apis brain Science 2006, 314, 647-9
-
(2006)
Science
, vol.314
, pp. 647-649
-
-
Hummon, A.B.1
Richmond, T.A.2
Verleyen, P.3
Baggerman, G.4
Huybrechts, J.5
Ewing, M.A.6
Vierstraete, E.7
Rodriguez-Zas, S.L.8
Schoofs, L.9
Robinson, G.E.10
Sweedler, J.V.11
-
56
-
-
75949114410
-
Neuropeptidomic analysis establishes a major role for prohormone convertase-2 in neuropeptide biosynthesis
-
Zhang, X.; Pan, H.; Peng, B.; Steiner, D. F.; Pintar, J. E.; Fricker, L. D. Neuropeptidomic analysis establishes a major role for prohormone convertase-2 in neuropeptide biosynthesis J. Neurochem. 2010, 112, 1168-79
-
(2010)
J. Neurochem.
, vol.112
, pp. 1168-1179
-
-
Zhang, X.1
Pan, H.2
Peng, B.3
Steiner, D.F.4
Pintar, J.E.5
Fricker, L.D.6
-
57
-
-
84863012019
-
Extensive characterization of Tupaia belangeri neuropeptidome using an integrated mass spectrometric approach
-
Petruzziello, F.; Fouillen, L.; Wadensten, H.; Kretz, R.; Andren, P. E.; Rainer, G.; Zhang, X. Extensive characterization of Tupaia belangeri neuropeptidome using an integrated mass spectrometric approach J. Proteome Res. 2012, 11, 886-96
-
(2012)
J. Proteome Res.
, vol.11
, pp. 886-896
-
-
Petruzziello, F.1
Fouillen, L.2
Wadensten, H.3
Kretz, R.4
Andren, P.E.5
Rainer, G.6
Zhang, X.7
-
58
-
-
84860495934
-
High identification rates of endogenous neuropeptides from mouse brain
-
Zhang, X.; Petruzziello, F.; Zani, F.; Fouillen, L.; Andren, P. E.; Solinas, G.; Rainer, G. High identification rates of endogenous neuropeptides from mouse brain J. Proteome Res. 2012, 11, 2819-27
-
(2012)
J. Proteome Res.
, vol.11
, pp. 2819-2827
-
-
Zhang, X.1
Petruzziello, F.2
Zani, F.3
Fouillen, L.4
Andren, P.E.5
Solinas, G.6
Rainer, G.7
-
59
-
-
79953718792
-
Peptidomics-based discovery of an antimicrobial peptide derived from insulin-like growth factor-binding protein 5
-
Osaki, T.; Sasaki, K.; Minamino, N. Peptidomics-based discovery of an antimicrobial peptide derived from insulin-like growth factor-binding protein 5 J. Proteome Res. 2011, 10, 1870-80
-
(2011)
J. Proteome Res.
, vol.10
, pp. 1870-1880
-
-
Osaki, T.1
Sasaki, K.2
Minamino, N.3
-
60
-
-
77957348112
-
A peptidomics strategy for discovering endogenous bioactive peptides
-
Sasaki, K.; Takahashi, N.; Satoh, M.; Yamasaki, M.; Minamino, N. A peptidomics strategy for discovering endogenous bioactive peptides J. Proteome Res. 2010, 9, 5047-52
-
(2010)
J. Proteome Res.
, vol.9
, pp. 5047-5052
-
-
Sasaki, K.1
Takahashi, N.2
Satoh, M.3
Yamasaki, M.4
Minamino, N.5
-
61
-
-
0033540056
-
Ghrelin is a growth-hormone-releasing acylated peptide from stomach
-
Kojima, M.; Hosoda, H.; Date, Y.; Nakazato, M.; Matsuo, H.; Kangawa, K. Ghrelin is a growth-hormone-releasing acylated peptide from stomach Nature 1999, 402, 656-60
-
(1999)
Nature
, vol.402
, pp. 656-660
-
-
Kojima, M.1
Hosoda, H.2
Date, Y.3
Nakazato, M.4
Matsuo, H.5
Kangawa, K.6
-
62
-
-
0037072769
-
Identification of a neuropeptide modified with bromine as an endogenous ligand for GPR7
-
Fujii, R.; Yoshida, H.; Fukusumi, S.; Habata, Y.; Hosoya, M.; Kawamata, Y.; Yano, T.; Hinuma, S.; Kitada, C.; Asami, T.; Mori, M.; Fujisawa, Y.; Fujino, M. Identification of a neuropeptide modified with bromine as an endogenous ligand for GPR7 J. Biol. Chem. 2002, 277, 34010-6
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 34010-34016
-
-
Fujii, R.1
Yoshida, H.2
Fukusumi, S.3
Habata, Y.4
Hosoya, M.5
Kawamata, Y.6
Yano, T.7
Hinuma, S.8
Kitada, C.9
Asami, T.10
Mori, M.11
Fujisawa, Y.12
Fujino, M.13
-
63
-
-
84859877187
-
Fast multi-blind modification search through tandem mass spectrometry
-
M111.010199.
-
Na, S.; Bandeira, N.; Paek, E. Fast multi-blind modification search through tandem mass spectrometry. Mol. Cell. Proteomics 2012, 11, M111.010199.
-
(2012)
Mol. Cell. Proteomics
, vol.11
-
-
Na, S.1
Bandeira, N.2
Paek, E.3
-
64
-
-
28644447919
-
Identification of post-translational modifications by blind search of mass spectra
-
Tsur, D.; Tanner, S.; Zandi, E.; Bafna, V.; Pevzner, P. A. Identification of post-translational modifications by blind search of mass spectra Nat. Biotechnol. 2005, 23, 1562-7
-
(2005)
Nat. Biotechnol.
, vol.23
, pp. 1562-1567
-
-
Tsur, D.1
Tanner, S.2
Zandi, E.3
Bafna, V.4
Pevzner, P.A.5
-
65
-
-
77952014893
-
Peptidomics coming of age: A review of contributions from a bioinformatics angle
-
Menschaert, G.; Vandekerckhove, T. T. M.; Baggerman, G.; Schoofs, L.; Luyten, W.; Van Criekinge, W. Peptidomics coming of age: a review of contributions from a bioinformatics angle J. Proteome Res. 2010, 9, 2051-61
-
(2010)
J. Proteome Res.
, vol.9
, pp. 2051-2061
-
-
Menschaert, G.1
Vandekerckhove, T.T.M.2
Baggerman, G.3
Schoofs, L.4
Luyten, W.5
Van Criekinge, W.6
-
66
-
-
0030960992
-
Small open reading frames: Beautiful needles in the haystack
-
Basrai, M. A.; Hieter, P.; Boeke, J. D. Small open reading frames: beautiful needles in the haystack Genome Res. 1997, 7, 768-71
-
(1997)
Genome Res.
, vol.7
, pp. 768-771
-
-
Basrai, M.A.1
Hieter, P.2
Boeke, J.D.3
-
67
-
-
34447573973
-
Small peptide regulators of actin-based cell morphogenesis encoded by a polycistronic mRNA
-
Kondo, T.; Hashimoto, Y.; Kato, K.; Inagaki, S.; Hayashi, S.; Kageyama, Y. Small peptide regulators of actin-based cell morphogenesis encoded by a polycistronic mRNA Nat. Cell Biol. 2007, 9, 660-5
-
(2007)
Nat. Cell Biol.
, vol.9
, pp. 660-665
-
-
Kondo, T.1
Hashimoto, Y.2
Kato, K.3
Inagaki, S.4
Hayashi, S.5
Kageyama, Y.6
-
68
-
-
81055155799
-
Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes
-
Ingolia, N. T.; Lareau, L. F.; Weissman, J. S. Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes Cell 2011, 147, 789-802
-
(2011)
Cell
, vol.147
, pp. 789-802
-
-
Ingolia, N.T.1
Lareau, L.F.2
Weissman, J.S.3
-
69
-
-
84871325792
-
Peptidomic discovery of short open reading frame-encoded peptides in human cells
-
Slavoff, S. A.; Mitchell, A. J.; Schwaid, A. G.; Cabili, M. N.; Ma, J.; Levin, J. Z.; Karger, A. D.; Budnik, B. A.; Rinn, J. L.; Saghatelian, A. Peptidomic discovery of short open reading frame-encoded peptides in human cells Nat. Chem. Biol. 2013, 9, 59-64
-
(2013)
Nat. Chem. Biol.
, vol.9
, pp. 59-64
-
-
Slavoff, S.A.1
Mitchell, A.J.2
Schwaid, A.G.3
Cabili, M.N.4
Ma, J.5
Levin, J.Z.6
Karger, A.D.7
Budnik, B.A.8
Rinn, J.L.9
Saghatelian, A.10
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