-
1
-
-
1542404674
-
Peptidomics
-
Baggerman, G., Verleyen, P., Clynen, E., Huybrechts, J. et al. Peptidomics. J. Chromatogr. B Analyt. Technol. Biomed. Life Sci. 2004, 803, 3-16.
-
(2004)
J. Chromatogr. B Analyt. Technol. Biomed. Life Sci.
, vol.803
, pp. 3-16
-
-
Baggerman, G.1
Verleyen, P.2
Clynen, E.3
Huybrechts, J.4
-
2
-
-
34250742360
-
Neuropeptides of the islets of Langerhans: A peptidomics study
-
DOI 10.1016/j.ygcen.2007.05.002, PII S0016648007001748
-
Boonen, K., Baggerman, G., D'Hertog, W., Husson, S. J. et al. Neuropeptides of the Islets of Langerhans: a peptidomics study. Gen. Comp. Endocrinol. 2007, 152, 231-241. (Pubitemid 46950889)
-
(2007)
General and Comparative Endocrinology
, vol.152
, Issue.2-3
, pp. 231-241
-
-
Boonen, K.1
Baggerman, G.2
Hertog, W.D.3
Husson, S.J.4
Overbergh, L.5
Mathieu, C.6
Schoofs, L.7
-
3
-
-
3242779476
-
Peptidomics in Drosophila melanogaster
-
Schoofs, L., Baggerman, G., Peptidomics in Drosophila melanogaster. Brief Funct. Genomic Proteomic 2003, 2, 114-120.
-
(2003)
Brief Funct. Genomic Proteomic
, vol.2
, pp. 114-120
-
-
Schoofs, L.1
Baggerman, G.2
-
4
-
-
40449115854
-
Peptidomics: The integrated approach of MS, hyphenated techniques and bioinformatics for neuropeptide analysis
-
DOI 10.1002/jssc.200700450, Analysis of Peptides
-
Boonen, K., Landuyt, B., Baggerman, G., Husson, S. J. et al. Peptidomics: the integrated approach of MS, hyphenated techniques and bioinformatics for neuropeptide analysis. J. Sep. Sci. 2008, 31, 427-445. (Pubitemid 351351176)
-
(2008)
Journal of Separation Science
, vol.31
, Issue.3
, pp. 427-445
-
-
Boonen, K.1
Landuyt, B.2
Baggerman, G.3
Husson, S.J.4
Huybrechts, J.5
Schoofs, L.6
-
5
-
-
70349124837
-
-
Wiley, New York
-
Soloviev, M., Andrén, P., Shaw, C., Peptidomics, Methods and Applications. Wiley, New York, 2008.
-
(2008)
Peptidomics, Methods and Applications
-
-
Soloviev, M.1
Andrén, P.2
Shaw, C.3
-
6
-
-
3142702204
-
TANDEM: Matching proteins with tandem mass spectra
-
DOI 10.1093/bioinformatics/bth092
-
Craig, R., Beavis, R. C., TANDEM: matching proteins with tandem mass spectra. Bioinformatics 2004, 20, 1466-1467. (Pubitemid 38931421)
-
(2004)
Bioinformatics
, vol.20
, Issue.9
, pp. 1466-1467
-
-
Craig, R.1
Beavis, R.C.2
-
7
-
-
0033434080
-
Probability-based protein identification by searching sequence databases using mass spectrometry data
-
Perkins, D. N., Pappin, D. J., Creasy, D. M., Cottrell, J. S., Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis 1999, 20, 3551-3567.
-
(1999)
Electrophoresis
, vol.20
, pp. 3551-3567
-
-
Perkins, D.N.1
Pappin, D.J.2
Creasy, D.M.3
Cottrell, J.S.4
-
8
-
-
0000857494
-
An approach to correlate tandem mass-spectral data of peptides with amino-acid-sequences in a protein database
-
Eng, J. K., Mccormack, A. L., Yates, J. R., An approach to correlate tandem mass-spectral data of peptides with amino-acid-sequences in a protein database. J. Am. Soc. Mass Spectr. 1994, 5, 976-989.
-
(1994)
J. Am. Soc. Mass Spectr.
, vol.5
, pp. 976-989
-
-
Eng, J.K.1
Mccormack, A.L.2
Yates, J.R.3
-
9
-
-
34249826390
-
Protein identification by spectral networks analysis
-
DOI 10.1073/pnas.0701130104
-
Bandeira, N., Tsur, D., Frank, A., Pevzner, P. A., Protein identification by spectral networks analysis. Proc. Natl. Acad. Sci. USA 2007, 104, 6140-6145. (Pubitemid 47186062)
-
(2007)
Proceedings of the National Academy of Sciences of the United States of America
, vol.104
, Issue.15
, pp. 6140-6145
-
-
Bandeira, N.1
Tsur, D.2
Frank, A.3
Pevzner, P.A.4
-
10
-
-
28644447919
-
Identification of post-translational modifications by blind search of mass spectra
-
DOI 10.1038/nbt1168
-
Tsur, D., Tanner, S., Zandi, E., Bafna, V., Pevzner, P. A., Identification of post-translational modifications by blind search of mass spectra. Nat. Biotechnol. 2005, 23, 1562-1567. (Pubitemid 41752935)
-
(2005)
Nature Biotechnology
, vol.23
, Issue.12
, pp. 1562-1567
-
-
Tsur, D.1
Tanner, S.2
Zandi, E.3
Bafna, V.4
Pevzner, P.A.5
-
11
-
-
58149391408
-
A spectral clustering approach to MS/MS identification of post-translational modifications
-
Falkner, J. A., Falkner, J. W., Yocum, A. K., Andrews, P. C., A spectral clustering approach to MS/MS identification of post-translational modifications. J. Proteome Res. 2008, 7, 4614-4622.
-
(2008)
J. Proteome Res.
, vol.7
, pp. 4614-4622
-
-
Falkner, J.A.1
Falkner, J.W.2
Yocum, A.K.3
Andrews, P.C.4
-
12
-
-
33646903914
-
ModifiComb, a new proteomic tool for mapping substoichiometric posttranslational modifications, finding novel types of modifi- Cations, and fingerprinting complex protein mixtures
-
Savitski, M. M., Nielsen, M. L., Zubarev, R. A., ModifiComb, a new proteomic tool for mapping substoichiometric posttranslational modifications, finding novel types of modifi- cations, and fingerprinting complex protein mixtures. Mol Cell Proteomics 2006, 5, 935-948.
-
(2006)
Mol Cell Proteomics
, vol.5
, pp. 935-948
-
-
Savitski, M.M.1
Nielsen, M.L.2
Zubarev, R.A.3
-
13
-
-
70349089544
-
-
Menschaert, G., Vandekerckhove, T. T. M., Vancriekinge, W., ISMB/ECCB Conference, 2007.
-
(2007)
ISMB/ECCB Conference
-
-
Menschaert, G.1
Vandekerckhove, T.T.M.2
Vancriekinge, W.3
-
14
-
-
58549101102
-
Discovery and revision of Arabidopsis genes by proteogenomics
-
Castellana, N. E., Payne, S. H., Shen, Z., Stanke, M. et al., Discovery and revision of Arabidopsis genes by proteogenomics. Proc. Natl. Acad. Sci. USA 2008, 105, 21034-21038.
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 21034-21038
-
-
Castellana, N.E.1
Payne, S.H.2
Shen, Z.3
Stanke, M.4
-
15
-
-
34547116181
-
Neuropeptidomics strategies for specific and sensitive identification of endogenous peptides
-
DOI 10.1074/mcp.M700016-MCP200
-
Falth, M., Skold, K., Svensson, M., Nilsson, A. et al. Neuropeptidomics strategies for specific and sensitive identification of endogenous peptides. Mol. Cell Proteomics 2007, 6, 1188-1197. (Pubitemid 47099229)
-
(2007)
Molecular and Cellular Proteomics
, vol.6
, Issue.7
, pp. 1188-1197
-
-
Falth, M.1
Skold, K.2
Svensson, M.3
Nilsson, A.4
Fenyo, D.5
Andren, P.E.6
-
16
-
-
70349104471
-
-
Richmond, T. A. B. G., Vandekerckhove, T. T. M., Menschaert, G., Husson, S. J. et al., ASMS Conference, 2008.
-
(2008)
ASMS Conference
-
-
Richmond, T.A.B.G.1
Vandekerckhove, T.T.M.2
Menschaert, G.3
Husson, S.J.4
-
17
-
-
13444273448
-
The Universal Protein Resource (UniProt)
-
DOI 10.1093/nar/gki070
-
Bairoch, A., Consortium, U., Bougueleret, L., Altairac, S. et al. The Universal Protein Resource (UniProt) 2009. Nucl. Acids Res. 2009, 37, D169-D174. (Pubitemid 40207850)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.DATABASE ISS
-
-
Bairoch, A.1
Apweiler, R.2
Wu, C.H.3
Barker, W.C.4
Boeckmann, B.5
Ferro, S.6
Gasteiger, E.7
Huang, H.8
Lopez, R.9
Magrane, M.10
Martin, M.J.11
Natale, D.A.12
O'Donovan, C.13
Redaschi, N.14
Yeh, L.-S.L.15
-
18
-
-
50149117169
-
Spectral probabilities and generating functions of tandemmass spectra: A strike against decoy databases
-
Kim, S., Gupta, N., Pevzner, P. A., Spectral probabilities and generating functions of tandemmass spectra: a strike against decoy databases. J. Proteome Res. 2008, 7, 3354-3363.
-
(2008)
J. Proteome Res.
, vol.7
, pp. 3354-3363
-
-
Kim, S.1
Gupta, N.2
Pevzner, P.A.3
-
19
-
-
33847630405
-
Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry
-
Elias, J. E., Gygi, S. P., Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry. Nat. Methods 2007, 4, 207-214.
-
(2007)
Nat. Methods
, vol.4
, pp. 207-214
-
-
Elias, J.E.1
Gygi, S.P.2
-
20
-
-
32544455331
-
Randomized sequence databases for tandem mass spectrometry peptide and protein identification
-
DOI 10.1089/omi.2005.9.364
-
Higdon, R., Hogan, J. M., Van Belle, G., Kolker, E., Randomized sequence databases for tandem mass spectrometry peptide and protein identification. OMICS 2005, 9, 364-379. (Pubitemid 43235291)
-
(2005)
OMICS a Journal of Integrative Biology
, vol.9
, Issue.4
, pp. 364-379
-
-
Higdon, R.1
Hogan, J.M.2
Van Belle, G.3
Kolker, E.4
-
21
-
-
34249316472
-
Estimating the statistical significance of peptide identifications from shotgun proteomics experiments
-
Higgs, R. E., Knierman, M. D., Freeman, A. B., Gelbert, L. M. et al. Estimating the statistical significance of peptide identifications from shotgun proteomics experiments. J. Proteome Res. 2007, 6, 1758-1767.
-
(2007)
J. Proteome Res.
, vol.6
, pp. 1758-1767
-
-
Higgs, R.E.1
Knierman, M.D.2
Freeman, A.B.3
Gelbert, L.M.4
-
22
-
-
0037302811
-
Neuropeptide conversion to bioactive fragments - An important pathway in neuromodulation
-
DOI 10.2174/1389203033380313
-
Hallberg, M., Nyberg, F., Neuropeptide conversion to bioactive fragments - an important pathway in neuromodulation. Curr. Protein Pept. Sci. 2003, 4, 31-44. (Pubitemid 36131669)
-
(2003)
Current Protein and Peptide Science
, vol.4
, Issue.1
, pp. 31-44
-
-
Hallberg, M.1
Nyberg, F.2
-
23
-
-
34548100559
-
Neuropeptidomics to study peptide processing in animal models of obesity
-
Fricker, L. D., Neuropeptidomics to study peptide processing in animal models of obesity. Endocrinology 2007, 148, 4185-4190.
-
(2007)
Endocrinology
, vol.148
, pp. 4185-4190
-
-
Fricker, L.D.1
-
24
-
-
44149119998
-
Mass spectrometric identification of formaldehyde-induced peptide modifications under in vivo protein cross-linking conditions
-
Toews, J., Rogalski, J. C., Clark, T. J., Kast, J., Mass spectrometric identification of formaldehyde-induced peptide modifications under in vivo protein cross-linking conditions. Anal. Chim. Acta 2008, 618, 168-183.
-
(2008)
Anal. Chim. Acta
, vol.618
, pp. 168-183
-
-
Toews, J.1
Rogalski, J.C.2
Clark, T.J.3
Kast, J.4
-
25
-
-
23044513880
-
Loss of the mtr operon in Methanosarcina blocks growth on methanol, but not methanogenesis, and reveals an unknown methanogenic pathway
-
Welander, P. V., Metcalf, W. W., Loss of the mtr operon in Methanosarcina blocks growth on methanol, but not methanogenesis, and reveals an unknown methanogenic pathway. Proc. Natl. Acad. Sci. USA 2005, 102, 10664-10669.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 10664-10669
-
-
Welander, P.V.1
Metcalf, W.W.2
-
26
-
-
84990671434
-
The application of Maxent to high-resolution mass-spectrometry
-
Ferrige, A. G., Seddon, M. J., Skilling, J., Ordsmith, N., The application of Maxent to high-resolution mass-spectrometry. Rapid Commun. Mass Spectrom. 1992, 6, 765-770.
-
(1992)
Rapid Commun. Mass Spectrom.
, vol.6
, pp. 765-770
-
-
Ferrige, A.G.1
Seddon, M.J.2
Skilling, J.3
Ordsmith, N.4
-
27
-
-
2942568222
-
Unimod: Protein modifications for mass spectrometry
-
DOI 10.1002/pmic.200300744
-
Creasy, D. M., Cottrell, J. S., Unimod: protein modifications for mass spectrometry. Proteomics 2004, 4, 1534-1536. (Pubitemid 38738312)
-
(2004)
Proteomics
, vol.4
, Issue.6
, pp. 1534-1536
-
-
Creasy, D.M.1
Cottrell, J.S.2
|