-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S. F., Madden, T. L., Schäffer, A. A., Zhang, J., Zhang, Z., Miller, W., and Lipman, D. J. (1997). Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25, 3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
2
-
-
33646543701
-
Bridging neuropeptidomics and genomics with bioinformatics: Prediction of mammalian neuropeptide prohormone processing
-
Amare, A., Hummon, A. B., Southey, B. R., Zimmerman, T. A., Rodriguez- Zas, S. L., and Sweedler, J. V. (2006). Bridging neuropeptidomics and genomics with bioinformatics: prediction of mammalian neuropeptide prohormone processing. J. Proteome Res. 5, 1162-1167.
-
(2006)
J. Proteome Res
, vol.5
, pp. 1162-1167
-
-
Amare, A.1
Hummon, A.B.2
Southey, B.R.3
Zimmerman, T.A.4
Rodriguez-Zas, S.L.5
Sweedler, J.V.6
-
3
-
-
36948999784
-
A primer on Python for life science researchers
-
Bassi, S. (2007). A primer on Python for life science researchers. PLoS Comput. Biol. 3, e199.
-
(2007)
PLoS Comput. Biol
, vol.3
-
-
Bassi, S.1
-
4
-
-
3042521098
-
Improved prediction of signal peptides: SignalP 3.0
-
Bendtsen, J. D., Nielsen, H., von Heijne, G., and Brunak, S. (2004). Improved prediction of signal peptides: SignalP 3.0. J. Mol. Biol. 340, 783-795.
-
(2004)
J. Mol. Biol
, vol.340
, pp. 783-795
-
-
Bendtsen, J.D.1
Nielsen, H.2
von Heijne, G.3
Brunak, S.4
-
5
-
-
2442713832
-
GeneWise and genomewise
-
Birney, E., Clamp, M., and Durbin, R. (2004). GeneWise and genomewise. Genome Res. 14, 988-995.
-
(2004)
Genome Res
, vol.14
, pp. 988-995
-
-
Birney, E.1
Clamp, M.2
Durbin, R.3
-
6
-
-
43449126821
-
A neuropeptide-centric view of psychostimulant addiction
-
Boutrel, B. (2008). A neuropeptide-centric view of psychostimulant addiction. Br. J. Pharmacol. 154, 343-357.
-
(2008)
Br. J. Pharmacol
, vol.154
, pp. 343-357
-
-
Boutrel, B.1
-
8
-
-
30444432702
-
Neuropeptideprocessing enzymes: Applications for drug discovery
-
Fricker, L. D. (2005). Neuropeptideprocessing enzymes: applications for drug discovery. AAPS J. 7, E449-E455.
-
(2005)
AAPS J
, vol.7
-
-
Fricker, L.D.1
-
9
-
-
43449102252
-
Neuropeptides and social behavior: Effects of oxytocin and vasopressin in humans
-
Heinrichs, M., and Domes, G. (2008). Neuropeptides and social behavior: effects of oxytocin and vasopressin in humans. Prog. Brain Res. 170, 337-350.
-
(2008)
Prog. Brain Res
, vol.170
, pp. 337-350
-
-
Heinrichs, M.1
Domes, G.2
-
10
-
-
33750619248
-
Unique neuronal functions of cathepsin L and cathepsin B in secretory vesicles: Biosynthesis of peptides in neurotransmission and neurodegenerative disease
-
Hook, V. Y. (2006). Unique neuronal functions of cathepsin L and cathepsin B in secretory vesicles: biosynthesis of peptides in neurotransmission and neurodegenerative disease. Biol. Chem. 387, 1429-1439.
-
(2006)
Biol. Chem
, vol.387
, pp. 1429-1439
-
-
Hook, V.Y.1
-
11
-
-
41149103075
-
Proteases for processing proneuropeptides into peptide neurotransmitters and hormones
-
Hook, V., Funkelstein, L., Lu, D., Bark, S., Wegrzyn, J., and Hwang, S. (2008). Proteases for processing proneuropeptides into peptide neurotransmitters and hormones. Ann. Rev. Pharmac. Toxicol. 48, 393-423.
-
(2008)
Ann. Rev. Pharmac. Toxicol
, vol.48
, pp. 393-423
-
-
Hook, V.1
Funkelstein, L.2
Lu, D.3
Bark, S.4
Wegrzyn, J.5
Hwang, S.6
-
12
-
-
0346251363
-
From precursor to fi nal peptides: A statistical sequence-based approach to predicting prohormone processing
-
Hummon, A. B., Hummon, N. P., Corbin, R. W., Li, L. J., Vilim, F. S., Weiss, K. R., and Sweedler, J. V. (2003). From precursor to fi nal peptides: a statistical sequence-based approach to predicting prohormone processing. J. Proteome Res. 2, 650-656.
-
(2003)
J. Proteome Res
, vol.2
, pp. 650-656
-
-
Hummon, A.B.1
Hummon, N.P.2
Corbin, R.W.3
Li, L.J.4
Vilim, F.S.5
Weiss, K.R.6
Sweedler, J.V.7
-
13
-
-
33749554743
-
From the genome to the proteome: Uncovering peptides in the Apis brain
-
Hummon, A. B., Richmond, T. A., Verleyen, P., Baggerman, G., Huybrechts, J., Ewing, M. A., Vierstraete, E., Rodriguez-Zas, S. L., Schoofs, L., Robinson, G. E., and Sweedler, J. V. (2005). From the genome to the proteome: uncovering peptides in the Apis brain. Science 314, 647-649.
-
(2005)
Science
, vol.314
, pp. 647-649
-
-
Hummon, A.B.1
Richmond, T.A.2
Verleyen, P.3
Baggerman, G.4
Huybrechts, J.5
Ewing, M.A.6
Vierstraete, E.7
Rodriguez-Zas, S.L.8
Schoofs, L.9
Robinson, G.E.10
Sweedler, J.V.11
-
14
-
-
74549143560
-
-
Sudbury, Massachusetts: Jones and Bartlett Publishers
-
Kinser, J. (2008). Python for Bioinformatics. Sudbury, Massachusetts: Jones and Bartlett Publishers.
-
(2008)
Python For Bioinformatics
-
-
Kinser, J.1
-
15
-
-
51949104682
-
Peptides in the brain: Mass spectrometrybased measurement approaches and challenges
-
Li, L., and Sweedler, J. V. (2008). Peptides in the brain: mass spectrometrybased measurement approaches and challenges. Annu. Rev. Anal. Chem. 1, 451-483.
-
(2008)
Annu. Rev. Anal. Chem
, vol.1
, pp. 451-483
-
-
Li, L.1
Sweedler, J.V.2
-
16
-
-
0034623005
-
T-coffee: A novel method for multiple sequence alignments
-
Notredame, C., Higgins, D., and Heringa, J. (2000). T-coffee: a novel method for multiple sequence alignments. J. Mol. Biol. 302, 205-217.
-
(2000)
J. Mol. Biol
, vol.302
, pp. 205-217
-
-
Notredame, C.1
Higgins, D.2
Heringa, J.3
-
17
-
-
34247500374
-
Python for scientifi c computing
-
Oliphant, T. E. (2007). Python for scientifi c computing. Comput. Sci. Eng. 9, 10-20.
-
(2007)
Comput. Sci. Eng
, vol.9
, pp. 10-20
-
-
Oliphant, T.E.1
-
18
-
-
34247352040
-
Evolutionary and biomedical insights from the rhesus macaque genome
-
Rhesus Macaque Genome Sequencing and Analysis Consortium
-
Rhesus Macaque Genome Sequencing and Analysis Consortium (2007). Evolutionary and biomedical insights from the rhesus macaque genome. Science 316, 222-234.
-
(2007)
Science
, vol.316
, pp. 222-234
-
-
-
19
-
-
27144463192
-
On comparing classifi ers: Pitfals to avoid and a recommended approach
-
Salzberg, S. L. (1997). On comparing classifi ers: pitfals to avoid and a recommended approach. Data Min. Knowl. Disc. 1, 317-328.
-
(1997)
Data Min. Knowl. Disc
, vol.1
, pp. 317-328
-
-
Salzberg, S.L.1
-
20
-
-
33747866382
-
NeuroPred: A tool to predict cleavage sites in neuropeptide precursors and provide the masses of the resulting peptides
-
Southey, B. R., Amare, A., Zimmerman, T. A., Rodriguez-Zas, S. L., and Sweedler, J. V. (2006a). NeuroPred: a tool to predict cleavage sites in neuropeptide precursors and provide the masses of the resulting peptides. Nucleic Acids Res. 34, W267-W272.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Southey, B.R.1
Amare, A.2
Zimmerman, T.A.3
Rodriguez-Zas, S.L.4
Sweedler, J.V.5
-
21
-
-
33646144688
-
Prediction of neuropeptide prohormone cleavages with application to RFamides
-
Southey, B. R., Rodriguez-Zas, S. L., and Sweedler, J. V. (2006b) Prediction of neuropeptide prohormone cleavages with application to RFamides. Peptides 27, 1087-1098.
-
(2006)
Peptides
, vol.27
, pp. 1087-1098
-
-
Southey, B.R.1
Rodriguez-Zas, S.L.2
Sweedler, J.V.3
-
22
-
-
40749124939
-
Prediction of neuropeptide cleavage sites in insects
-
Southey, B. R., Sweedler, J. V., and Rodriguez-Zas, S. L. (2008). Prediction of neuropeptide cleavage sites in insects. Bioinformatics 24, 815-824.
-
(2008)
Bioinformatics
, vol.24
, pp. 815-824
-
-
Southey, B.R.1
Sweedler, J.V.2
Rodriguez-Zas, S.L.3
-
23
-
-
39149134576
-
Comparative analysis of neuropeptide cleavage sites in human, mouse, rat, and cattle
-
Tegge, A. N., Southey, B. R., Sweedler, J. V., and Rodriguez-Zas, S. L. (2008). Comparative analysis of neuropeptide cleavage sites in human, mouse, rat, and cattle. Mamm. Genome 19, 106-120.
-
(2008)
Mamm. Genome
, vol.19
, pp. 106-120
-
-
Tegge, A.N.1
Southey, B.R.2
Sweedler, J.V.3
Rodriguez-Zas, S.L.4
-
24
-
-
38549097071
-
The universal protein resource (UniProt)
-
The UniProt Consortium
-
The UniProt Consortium (2008). The universal protein resource (UniProt). Nucleic Acids Res. 36, D190-D195.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
-
25
-
-
84879282802
-
The nucleotide sequence of cDNA coding for preproinsulin from the primate Macaca fascicularis
-
Wetekam, W., Groneberg, J., Leineweber, M., Wengenmayer, F., and Winnaker, E. -L. (1982). The nucleotide sequence of cDNA coding for preproinsulin from the primate Macaca fascicularis. Gene 19, 179-183.
-
(1982)
Gene
, vol.19
, pp. 179-183
-
-
Wetekam, W.1
Groneberg, J.2
Leineweber, M.3
Wengenmayer, F.4
Winnaker E., -L.5
|