메뉴 건너뛰기




Volumn 11, Issue 2, 2012, Pages 668-677

Improving collision induced dissociation (CID), high energy collision dissociation (HCD), and electron transfer dissociation (ETD) fourier transform MS/MS degradome-peptidome identifications using high accuracy mass information

Author keywords

CID; degradome; ETD; FT MS MS; HCD; merging of spectra; nontryptic peptides; peptides; peptidome; scoring of spectra

Indexed keywords

ACCURACY; ARTICLE; BLOOD ANALYSIS; CHEMICAL REACTION; COLLISIONALLY ACTIVATED DISSOCIATION; ELECTRON TRANSFER DISSOCIATION; ELECTRON TRANSPORT; FOURIER TRANSFORM MASS SPECTROMETRY; FRAGMENTATION REACTION; HIGH ENERGY COLLISION DISSOCIATION; HUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; SPECIES IDENTIFICATION; TANDEM MASS SPECTROMETRY;

EID: 84863053378     PISSN: 15353893     EISSN: 15353907     Source Type: Journal    
DOI: 10.1021/pr200597j     Document Type: Article
Times cited : (22)

References (24)
  • 5
    • 49449100723 scopus 로고    scopus 로고
    • Mass spectrometry analysis of proteome-wide proteolytic post-translational degradation of proteins
    • Shen, Y.; Hixson, K. K.; Tolić, N.; Camp, D. G.; Purvine, S. O.; Moore, R. J.; Smith, R. D. Mass spectrometry analysis of proteome-wide proteolytic post-translational degradation of proteins Anal. Chem. 2008, 80, 5819-5828
    • (2008) Anal. Chem. , vol.80 , pp. 5819-5828
    • Shen, Y.1    Hixson, K.K.2    Tolić, N.3    Camp, D.G.4    Purvine, S.O.5    Moore, R.J.6    Smith, R.D.7
  • 7
    • 80052485658 scopus 로고    scopus 로고
    • Effectiveness of CID, HCD, and ETD in FT MS/MS analysis of peptide: Evaluations from different peptide identification methods
    • Shen, Y.; Tolić, N.; Xie, F.; Zhao, R.; Purvine, S. O.; Schepmoes, A. A.; Moore, R. J.; Anderson, G. A.; Smith, R. D. Effectiveness of CID, HCD, and ETD in FT MS/MS analysis of peptide: evaluations from different peptide identification methods J. Proteome Res. 2011, 10, 3929-3943
    • (2011) J. Proteome Res. , vol.10 , pp. 3929-3943
    • Shen, Y.1    Tolić, N.2    Xie, F.3    Zhao, R.4    Purvine, S.O.5    Schepmoes, A.A.6    Moore, R.J.7    Anderson, G.A.8    Smith, R.D.9
  • 8
    • 35848929694 scopus 로고    scopus 로고
    • Analysis and validation of proteomic data generated by tandem mass spectrometry
    • Nesvizhskii, A.; Vitek, O.; Aebersold, R. A. Analysis and validation of proteomic data generated by tandem mass spectrometry Nat. Methods 2007, 4, 787-797
    • (2007) Nat. Methods , vol.4 , pp. 787-797
    • Nesvizhskii, A.1    Vitek, O.2    Aebersold, R.A.3
  • 9
    • 41449112363 scopus 로고    scopus 로고
    • Proteome-wide identification of proteomics and their modifications with decreased ambiguities and improved false discovery rates using unique sequence tags
    • Shen, Y.; Tolić, N.; Hixson, K. K.; Purvine, S. O.; Pasǎ-Tolić, L.; Qian, W. J.; Adkins, J. N.; Moore, R. J.; Smith, R. D. Proteome-wide identification of proteomics and their modifications with decreased ambiguities and improved false discovery rates using unique sequence tags Anal. Chem. 2008, 80, 1871-1882
    • (2008) Anal. Chem. , vol.80 , pp. 1871-1882
    • Shen, Y.1    Tolić, N.2    Hixson, K.K.3    Purvine, S.O.4    Pasǎ-Tolić, L.5    Qian, W.J.6    Adkins, J.N.7    Moore, R.J.8    Smith, R.D.9
  • 10
    • 0034582319 scopus 로고    scopus 로고
    • Automated reduction and interpretation of high resolution electrospray mass spectra of large proteins
    • Horn, D. M.; Zubarev, R. A.; McLaffery, F. W. Automated reduction and interpretation of high resolution electrospray mass spectra of large proteins J. Am. Soc. Mass Spectrom. 2000, 11, 330-332
    • (2000) J. Am. Soc. Mass Spectrom. , vol.11 , pp. 330-332
    • Horn, D.M.1    Zubarev, R.A.2    McLaffery, F.W.3
  • 11
  • 12
  • 15
    • 0033434080 scopus 로고    scopus 로고
    • Probability-based protein identification searching sequence database using mass spectrometry data
    • Perkins, D. N.; Pappin, D. J. C.; Creasy, D. M.; Cottrell, J. S. Probability-based protein identification searching sequence database using mass spectrometry data Electrophoresis 1999, 20, 3551-3567
    • (1999) Electrophoresis , vol.20 , pp. 3551-3567
    • Perkins, D.N.1    Pappin, D.J.C.2    Creasy, D.M.3    Cottrell, J.S.4
  • 17
    • 66149096321 scopus 로고    scopus 로고
    • Sensitive and specific identification of wild type and variant proteins from 8 to 669 kDa using top-down mass spectrometry
    • Karabacak, N. M.; Li, L.; Tiwari, A.; Hayward, L. J.; Hong, P.; Easterling, M. L.; Agar, J. N. Sensitive and specific identification of wild type and variant proteins from 8 to 669 kDa using top-down mass spectrometry Mol. Cell. Proteomics 2009, 8, 846-856
    • (2009) Mol. Cell. Proteomics , vol.8 , pp. 846-856
    • Karabacak, N.M.1    Li, L.2    Tiwari, A.3    Hayward, L.J.4    Hong, P.5    Easterling, M.L.6    Agar, J.N.7
  • 18
    • 33847630405 scopus 로고    scopus 로고
    • Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry
    • Elias, J. E.; Gygi, S. P. Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry Nat. Methods 2007, 4, 207-214
    • (2007) Nat. Methods , vol.4 , pp. 207-214
    • Elias, J.E.1    Gygi, S.P.2
  • 19
    • 50149117169 scopus 로고    scopus 로고
    • Spectral probabilities and generating functions of tandem mass spectra: A strike against decoy database
    • Kim, S.; Gupta, N.; Pevzner, P. A. Spectral probabilities and generating functions of tandem mass spectra: a strike against decoy database J. Proteome Res. 2008, 7, 3354-3363
    • (2008) J. Proteome Res. , vol.7 , pp. 3354-3363
    • Kim, S.1    Gupta, N.2    Pevzner, P.A.3
  • 21
    • 78149391462 scopus 로고    scopus 로고
    • H-Score, a mass accuracy deriven rescoring approach for improved peptide identification in modification rich samples
    • Savitski, M.; Mathieson, T.; Becher, I.; Bantscheff, M. H-Score, a mass accuracy deriven rescoring approach for improved peptide identification in modification rich samples J. Proteome Res. 2010, 9, 5511-5516
    • (2010) J. Proteome Res. , vol.9 , pp. 5511-5516
    • Savitski, M.1    Mathieson, T.2    Becher, I.3    Bantscheff, M.4
  • 22
    • 21044441542 scopus 로고    scopus 로고
    • Improving protein identification using complementary fragmentation techniques in Fourier transform mass spectrometry
    • Nielsen, M. L.; Savitski, M. M.; Zubarev, R. A. Improving protein identification using complementary fragmentation techniques in Fourier transform mass spectrometry Mol. Cell. Proteomics 2005, 4, 835-845
    • (2005) Mol. Cell. Proteomics , vol.4 , pp. 835-845
    • Nielsen, M.L.1    Savitski, M.M.2    Zubarev, R.A.3
  • 23
    • 74849138649 scopus 로고    scopus 로고
    • Combining low- and high-energy tandem mass spectra for optimized peptide quantification with isobaric tags
    • Dayon, L.; Pasquarello, C.; Hoogland, C.; Sanchez., J-. C.; Scherl, A. Combining low- and high-energy tandem mass spectra for optimized peptide quantification with isobaric tags J. Proteomics 2010, 73, 769-777
    • (2010) J. Proteomics , vol.73 , pp. 769-777
    • Dayon, L.1    Pasquarello, C.2    Hoogland, C.3    Sanchez, J.-C.4    Scherl, A.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.