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Volumn 280, Issue 24, 2013, Pages 6581-6588

Dissecting the contribution of thrombin exosite i in the recognition of thrombin binding aptamer

Author keywords

biosensors; G quadruplex; human thrombin; protein nucleic acid complex; thrombin binding aptamer; thrombosis

Indexed keywords

APTAMER; GUANINE QUADRUPLEX; THROMBIN; THROMBIN BINDING APTAMER; THROMBIN BINDING APTAMER DELTA T12; THROMBIN BINDING APTAMER DELTA T3; THROMBIN EXOSITE I; UNCLASSIFIED DRUG;

EID: 84889679159     PISSN: 1742464X     EISSN: 17424658     Source Type: Journal    
DOI: 10.1111/febs.12561     Document Type: Article
Times cited : (50)

References (40)
  • 2
    • 80052257765 scopus 로고    scopus 로고
    • Molecular imaging with nucleic acid aptamers
    • Hong H, Goel S, Zhang Y, &, Cai W, (2011) Molecular imaging with nucleic acid aptamers. Curr Med Chem 18, 4195-4205.
    • (2011) Curr Med Chem , vol.18 , pp. 4195-4205
    • Hong, H.1    Goel, S.2    Zhang, Y.3    Cai, W.4
  • 4
    • 0034603154 scopus 로고    scopus 로고
    • Adaptive recognition by nucleic acid aptamers
    • Hermann T, &, Patel DJ, (2000) Adaptive recognition by nucleic acid aptamers. Science 287, 820-825.
    • (2000) Science , vol.287 , pp. 820-825
    • Hermann, T.1    Patel, D.J.2
  • 6
    • 84867330958 scopus 로고    scopus 로고
    • Polyvalent nucleic acid aptamers and modulation of their activity: A focus on the thrombin binding aptamer
    • Musumeci D, &, Montesarchio D, (2012) Polyvalent nucleic acid aptamers and modulation of their activity: a focus on the thrombin binding aptamer. Pharmacol Ther 136, 202-215.
    • (2012) Pharmacol Ther , vol.136 , pp. 202-215
    • Musumeci, D.1    Montesarchio, D.2
  • 7
    • 56249097260 scopus 로고    scopus 로고
    • Targeted delivery of cisplatin to prostate cancer cells by aptamer functionalized Pt(IV) prodrug-PLGA-PEG nanoparticles
    • Dhar S, Gu FX, Langer R, Farokhzad OC, &, Lippard SJ, (2008) Targeted delivery of cisplatin to prostate cancer cells by aptamer functionalized Pt(IV) prodrug-PLGA-PEG nanoparticles. Proc Natl Acad Sci USA 105, 17356-17361.
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 17356-17361
    • Dhar, S.1    Gu, F.X.2    Langer, R.3    Farokhzad, O.C.4    Lippard, S.J.5
  • 10
    • 84860203819 scopus 로고    scopus 로고
    • Thrombin binding aptamer, more than a simple aptamer: Chemically modified derivatives and biomedical applications
    • Avino A, Fabrega C, Tintore M, &, Eritja R, (2012) Thrombin binding aptamer, more than a simple aptamer: chemically modified derivatives and biomedical applications. Curr Pharm Des 18, 2036-2047.
    • (2012) Curr Pharm des , vol.18 , pp. 2036-2047
    • Avino, A.1    Fabrega, C.2    Tintore, M.3    Eritja, R.4
  • 11
    • 27144505651 scopus 로고    scopus 로고
    • Molecular recognition mechanisms of thrombin
    • Huntington JA, (2005) Molecular recognition mechanisms of thrombin. J Thromb Haemost 3, 1861-1872.
    • (2005) J Thromb Haemost , vol.3 , pp. 1861-1872
    • Huntington, J.A.1
  • 12
    • 0019729451 scopus 로고
    • Thrombin specificity
    • Fenton JW 2nd, (1981) Thrombin specificity. Ann N Y Acad Sci 370, 468-495.
    • (1981) Ann N y Acad Sci , vol.370 , pp. 468-495
    • Fenton II, J.W.1
  • 13
    • 33746859068 scopus 로고    scopus 로고
    • Thrombin-cofactor interactions: Structural insights into regulatory mechanisms
    • Adams TE, &, Huntington JA, (2006) Thrombin-cofactor interactions: structural insights into regulatory mechanisms. Arterioscler Thromb Vasc Biol 26, 1738-1745.
    • (2006) Arterioscler Thromb Vasc Biol , vol.26 , pp. 1738-1745
    • Adams, T.E.1    Huntington, J.A.2
  • 14
    • 28844451812 scopus 로고    scopus 로고
    • Recombinant activated factor VII and the anaesthetist
    • Welsby IJ, Monroe DM, Lawson JH, &, Hoffmann M, (2005) Recombinant activated factor VII and the anaesthetist. Anaesthesia 60, 1203-1212.
    • (2005) Anaesthesia , vol.60 , pp. 1203-1212
    • Welsby, I.J.1    Monroe, D.M.2    Lawson, J.H.3    Hoffmann, M.4
  • 15
    • 0026575221 scopus 로고
    • Selection of single-stranded DNA molecules that bind and inhibit human thrombin
    • Bock LC, Griffin LC, Latham JA, Vermaas EH, &, Toole JJ, (1992) Selection of single-stranded DNA molecules that bind and inhibit human thrombin. Nature 355, 564-566.
    • (1992) Nature , vol.355 , pp. 564-566
    • Bock, L.C.1    Griffin, L.C.2    Latham, J.A.3    Vermaas, E.H.4    Toole, J.J.5
  • 16
    • 84889634850 scopus 로고    scopus 로고
    • Duplex-quadruplex motifs in a peculiar structural organization cooperatively contribute to thrombin binding of a DNA aptamer
    • doi: 10.1107/S0907444913022269
    • Russo Krauss I, Pica A, Merlino A, Mazzarella L, &, Sica F, (2013) Duplex-quadruplex motifs in a peculiar structural organization cooperatively contribute to thrombin binding of a DNA aptamer. Acta Crystallogr D 69, doi: 10.1107/S0907444913022269.
    • (2013) Acta Crystallogr D , vol.69
    • Russo Krauss, I.1    Pica, A.2    Merlino, A.3    Mazzarella, L.4    Sica, F.5
  • 17
    • 84870535712 scopus 로고    scopus 로고
    • High-resolution structures of two complexes between thrombin and thrombin-binding aptamer shed light on the role of cations in the aptamer inhibitory activity
    • Russo Krauss I, Merlino A, Randazzo A, Novellino E, Mazzarella L, &, Sica F, (2012) High-resolution structures of two complexes between thrombin and thrombin-binding aptamer shed light on the role of cations in the aptamer inhibitory activity. Nucleic Acids Res 40, 8119-8128.
    • (2012) Nucleic Acids Res , vol.40 , pp. 8119-8128
    • Russo Krauss, I.1    Merlino, A.2    Randazzo, A.3    Novellino, E.4    Mazzarella, L.5    Sica, F.6
  • 18
    • 0027467617 scopus 로고
    • Thrombin-binding DNA aptamer forms a unimolecular quadruplex structure in solution
    • Macaya RF, Schultze P, Smith FW, Roe JA, &, Feigon J, (1993) Thrombin-binding DNA aptamer forms a unimolecular quadruplex structure in solution. Proc Natl Acad Sci USA 90, 3745-3749.
    • (1993) Proc Natl Acad Sci USA , vol.90 , pp. 3745-3749
    • MacAya, R.F.1    Schultze, P.2    Smith, F.W.3    Roe, J.A.4    Feigon, J.5
  • 20
    • 84871007036 scopus 로고    scopus 로고
    • Investigating the role of T7 and T12 residues on the biological properties of thrombin-binding aptamer: Enhancement of anticoagulant activity by a single nucleobase modification
    • Borbone N, Bucci M, Oliviero G, Morelli E, Amato J, D'Atri V, D'Errico S, Vellecco V, Cirino G, Piccialli G, et al,. (2012) Investigating the role of T7 and T12 residues on the biological properties of thrombin-binding aptamer: enhancement of anticoagulant activity by a single nucleobase modification. J Med Chem 55, 10716-10728.
    • (2012) J Med Chem , vol.55 , pp. 10716-10728
    • Borbone, N.1    Bucci, M.2    Oliviero, G.3    Morelli, E.4    Amato, J.5    D'Atri, V.6    D'Errico, S.7    Vellecco, V.8    Cirino, G.9    Piccialli, G.10
  • 21
    • 84889632785 scopus 로고    scopus 로고
    • G-quadruplexes incorporating modified constituents: A review
    • in press. doi: 10.1080/07391102.2013.775074
    • Sagi J, (2013) G-quadruplexes incorporating modified constituents: a review. J Biomol Struct Dyn in press. doi: 10.1080/07391102.2013.775074.
    • (2013) J Biomol Struct Dyn
    • Sagi, J.1
  • 24
    • 84865711340 scopus 로고    scopus 로고
    • Interaction of water with the G-quadruplex loop contributes to the binding energy of G-quadruplex to protein
    • Nagatoishi S, &, Sugimoto N, (2012) Interaction of water with the G-quadruplex loop contributes to the binding energy of G-quadruplex to protein. Mol BioSyst 8, 2766-2770.
    • (2012) Mol BioSyst , vol.8 , pp. 2766-2770
    • Nagatoishi, S.1    Sugimoto, N.2
  • 27
    • 1042268168 scopus 로고    scopus 로고
    • G-quartets 40 years later: From 5′-GMP to molecular biology and supramolecular chemistry
    • Davis JT, (2004) G-quartets 40 years later: from 5′-GMP to molecular biology and supramolecular chemistry. Angew Chem Int Ed Engl 43, 668-698.
    • (2004) Angew Chem Int Ed Engl , vol.43 , pp. 668-698
    • Davis, J.T.1
  • 28
    • 41649095687 scopus 로고    scopus 로고
    • Effect of locked-nucleic acid on a biologically active G-quadruplex. A structure-activity relationship of the thrombin aptamer
    • Bonifacio L, Church FC, &, Jarstfer MB, (2008) Effect of locked-nucleic acid on a biologically active G-quadruplex. A structure-activity relationship of the thrombin aptamer. Int J Mol Sci 9, 422-433.
    • (2008) Int J Mol Sci , vol.9 , pp. 422-433
    • Bonifacio, L.1    Church, F.C.2    Jarstfer, M.B.3
  • 29
    • 12444263290 scopus 로고    scopus 로고
    • Light regulation of aptamer activity: An anti-thrombin aptamer with caged thymidine nucleobases
    • Heckel A, &, Mayer G, (2005) Light regulation of aptamer activity: an anti-thrombin aptamer with caged thymidine nucleobases. J Am Chem Soc 127, 822-823.
    • (2005) J Am Chem Soc , vol.127 , pp. 822-823
    • Heckel, A.1    Mayer, G.2
  • 30
    • 79960699716 scopus 로고    scopus 로고
    • Loop residues of thrombin-binding DNA aptamer impact G-quadruplex stability and thrombin binding
    • Nagatoishi S, Isono N, Tsumoto K, &, Sugimoto N, (2011) Loop residues of thrombin-binding DNA aptamer impact G-quadruplex stability and thrombin binding. Biochimie 93, 1231-1238.
    • (2011) Biochimie , vol.93 , pp. 1231-1238
    • Nagatoishi, S.1    Isono, N.2    Tsumoto, K.3    Sugimoto, N.4
  • 31
    • 0030064793 scopus 로고    scopus 로고
    • An ambiguous structure of a DNA 15-mer thrombin complex
    • Padmanabhan K, &, Tulinsky A, (1996) An ambiguous structure of a DNA 15-mer thrombin complex. Acta Crystallogr D 52, 272-282.
    • (1996) Acta Crystallogr D , vol.52 , pp. 272-282
    • Padmanabhan, K.1    Tulinsky, A.2
  • 32
    • 77955446114 scopus 로고    scopus 로고
    • Crystallization and preliminary X-ray analysis of the complex of human alpha-thrombin with a modified thrombin-binding aptamer
    • Russo Krauss I, Merlino A, Randazzo A, Mazzarella L, &, Sica F, (2010) Crystallization and preliminary X-ray analysis of the complex of human alpha-thrombin with a modified thrombin-binding aptamer. Acta Crystallogr F 66, 961-963.
    • (2010) Acta Crystallogr F , vol.66 , pp. 961-963
    • Russo Krauss, I.1    Merlino, A.2    Randazzo, A.3    Mazzarella, L.4    Sica, F.5
  • 33
    • 84879013039 scopus 로고    scopus 로고
    • An overview of biological macromolecule crystallization
    • Russo Krauss I, Merlino A, Vergara A, &, Sica F, (2013) An overview of biological macromolecule crystallization. Int J Mol Sci 14, 11643-11691.
    • (2013) Int J Mol Sci , vol.14 , pp. 11643-11691
    • Russo Krauss, I.1    Merlino, A.2    Vergara, A.3    Sica, F.4
  • 34
    • 0031059866 scopus 로고    scopus 로고
    • Processing of X-ray diffraction data collected in oscillation mode
    • In (Carter Jr.C.W., ed.), Academic Press, New York
    • Otwinowski Z, &, Minor W, (1997) Processing of X-ray diffraction data collected in oscillation mode. In Methods in Enzymology (, Carter CW Jr, ed.), pp. 307-326. Academic Press, New York.
    • (1997) Methods in Enzymology , pp. 307-326
    • Otwinowski, Z.1    Minor, W.2
  • 39
    • 0027169515 scopus 로고
    • Main-chain bond lengths and bond angles in protein structures
    • Laskowski RA, Moss DS, &, Thornton JM, (1993) Main-chain bond lengths and bond angles in protein structures. J Mol Biol 231, 1049-1067.
    • (1993) J Mol Biol , vol.231 , pp. 1049-1067
    • Laskowski, R.A.1    Moss, D.S.2    Thornton, J.M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.