메뉴 건너뛰기




Volumn 55, Issue 23, 2012, Pages 10716-10728

Investigating the role of T7 and T12 residues on the biological properties of thrombin-binding aptamer: Enhancement of anticoagulant activity by a single nucleobase modification

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; APTAMER; FIBRINOGEN; GUANINE QUADRUPLEX; NUCLEIC ACID BASE; THROMBIN; THROMBIN BINDING APTAMER; UNCLASSIFIED DRUG; ANTICOAGULANT AGENT; THROMBIN APTAMER;

EID: 84871007036     PISSN: 00222623     EISSN: 15204804     Source Type: Journal    
DOI: 10.1021/jm301414f     Document Type: Article
Times cited : (49)

References (54)
  • 1
    • 27144505651 scopus 로고    scopus 로고
    • Molecular recognition mechanisms of thrombin
    • Huntington, J. A. Molecular recognition mechanisms of thrombin J. Thromb. Haemost. 2005, 3, 1861-1872
    • (2005) J. Thromb. Haemost. , vol.3 , pp. 1861-1872
    • Huntington, J.A.1
  • 2
    • 0141484541 scopus 로고    scopus 로고
    • Thrombin interactions
    • Di Cera, E. Thrombin interactions Chest 2003, 124, 11S-17S
    • (2003) Chest , vol.124
    • Di Cera, E.1
  • 4
    • 41149167073 scopus 로고    scopus 로고
    • Structural identification of the pathway of long-range communication in an allosteric enzyme
    • Gandhi, P. S.; Chen, Z.; Mathews, F. S.; Di Cera, E. Structural identification of the pathway of long-range communication in an allosteric enzyme Proc. Natl. Acad. Sci. U.S.A. 2008, 105, 1832-1837
    • (2008) Proc. Natl. Acad. Sci. U.S.A. , vol.105 , pp. 1832-1837
    • Gandhi, P.S.1    Chen, Z.2    Mathews, F.S.3    Di Cera, E.4
  • 6
    • 34250719346 scopus 로고    scopus 로고
    • Thrombin as procoagulant and anticoagulant
    • Di Cera, E. Thrombin as procoagulant and anticoagulant J. Thromb. Haemost. 2007, 5, 196-202
    • (2007) J. Thromb. Haemost. , vol.5 , pp. 196-202
    • Di Cera, E.1
  • 7
    • 77956279561 scopus 로고    scopus 로고
    • NMR resonance assignments of thrombin reveal the conformational and dynamic effects of ligation
    • Lechtenberg, B. C.; Johnson, D. J. D.; Freund, S. M. V.; Huntington, J. A. NMR resonance assignments of thrombin reveal the conformational and dynamic effects of ligation Proc. Natl. Acad. Sci. U.S.A. 2010, 107, 14087-14092
    • (2010) Proc. Natl. Acad. Sci. U.S.A. , vol.107 , pp. 14087-14092
    • Lechtenberg, B.C.1    Johnson, D.J.D.2    Freund, S.M.V.3    Huntington, J.A.4
  • 8
    • 14844292593 scopus 로고    scopus 로고
    • Blood coagulation and its regulation by anticoagulant pathways: Genetic pathogenesis of bleeding and thrombotic diseases
    • Dahlback, B. Blood coagulation and its regulation by anticoagulant pathways: genetic pathogenesis of bleeding and thrombotic diseases J. Intern. Med. 2005, 257, 209-223
    • (2005) J. Intern. Med. , vol.257 , pp. 209-223
    • Dahlback, B.1
  • 9
    • 1242269948 scopus 로고    scopus 로고
    • New antithrombin-based anticoagulants
    • Desai, U. R. New antithrombin-based anticoagulants Med. Res. Rev. 2004, 24, 151-181
    • (2004) Med. Res. Rev. , vol.24 , pp. 151-181
    • Desai, U.R.1
  • 11
    • 0026575221 scopus 로고
    • Selection of single-stranded DNA molecules that bind and inhibit human thrombin
    • Bock, L. C.; Griffin, L. C.; Latham, J. A.; Vermaas, E. H.; Toole, J. J. Selection of single-stranded DNA molecules that bind and inhibit human thrombin Nature 1992, 355, 564-566
    • (1992) Nature , vol.355 , pp. 564-566
    • Bock, L.C.1    Griffin, L.C.2    Latham, J.A.3    Vermaas, E.H.4    Toole, J.J.5
  • 12
    • 0028097736 scopus 로고
    • A novel nucleotidebased thrombin inhibitor inhibits clot-bound thrombin and reduces arterial platelet thrombus formation
    • Li, W. X.; Kaplan, A. V.; Grant, G. W.; Toole, J. J.; Leung, L. L. A novel nucleotidebased thrombin inhibitor inhibits clot-bound thrombin and reduces arterial platelet thrombus formation Blood 1994, 83, 677-682
    • (1994) Blood , vol.83 , pp. 677-682
    • Li, W.X.1    Kaplan, A.V.2    Grant, G.W.3    Toole, J.J.4    Leung, L.L.5
  • 13
    • 0028318093 scopus 로고
    • Three-dimensional solution structure of the thrombin-binding DNA aptamer d(GGTTGGTGTGGTTGG)
    • Schultze, P.; Macaya, R. F.; Feigon, J. Three-dimensional solution structure of the thrombin-binding DNA aptamer d(GGTTGGTGTGGTTGG) J. Mol. Biol. 1994, 235, 1532-1547
    • (1994) J. Mol. Biol. , vol.235 , pp. 1532-1547
    • Schultze, P.1    MacAya, R.F.2    Feigon, J.3
  • 14
    • 0027380687 scopus 로고
    • The tertiary structure of a DNA aptamer which binds to and inhibits thrombin determines activity
    • Wang, K. Y.; Krawczyk, S. H.; Bischofberger, N.; Swaminathan, S.; Bolton, P. H. The tertiary structure of a DNA aptamer which binds to and inhibits thrombin determines activity Biochemistry 1993, 32, 11285-11292
    • (1993) Biochemistry , vol.32 , pp. 11285-11292
    • Wang, K.Y.1    Krawczyk, S.H.2    Bischofberger, N.3    Swaminathan, S.4    Bolton, P.H.5
  • 15
    • 0027467617 scopus 로고
    • Thrombin-binding DNA aptamer forms a unimolecular quadruplex structure in solution
    • Macaya, R.; Schultze, P.; Smith, F.; Roe, J.; Feigon, J. Thrombin-binding DNA aptamer forms a unimolecular quadruplex structure in solution Proc. Natl. Acad. Sci. U.S.A. 1993, 90, 3745-3749
    • (1993) Proc. Natl. Acad. Sci. U.S.A. , vol.90 , pp. 3745-3749
    • MacAya, R.1    Schultze, P.2    Smith, F.3    Roe, J.4    Feigon, J.5
  • 18
    • 84870535712 scopus 로고    scopus 로고
    • High-resolution structures of two complexes between thrombin and thrombin-binding aptamer shed light on the role of cations in the aptamer inhibitory activity
    • DOI: 10.1093/nar/gks512
    • Russo Krauss, I.; Merlino, A.; Randazzo, A.; Novellino, E.; Mazzarella, L.; Sica, F. High-resolution structures of two complexes between thrombin and thrombin-binding aptamer shed light on the role of cations in the aptamer inhibitory activity. Nucleic Acids Res. 2012, DOI: 10.1093/nar/gks512.
    • (2012) Nucleic Acids Res.
    • Russo Krauss, I.1    Merlino, A.2    Randazzo, A.3    Novellino, E.4    Mazzarella, L.5    Sica, F.6
  • 19
    • 0029980523 scopus 로고    scopus 로고
    • Reconciliation of the X-ray and NMR structures of the thrombin-binding aptamer d(GGTTGGTGTGGTTGG)
    • Kelly, J. A.; Feigon, J.; Yeates, T. O. Reconciliation of the X-ray and NMR structures of the thrombin-binding aptamer d(GGTTGGTGTGGTTGG) J. Mol. Biol. 1996, 256, 417-422
    • (1996) J. Mol. Biol. , vol.256 , pp. 417-422
    • Kelly, J.A.1    Feigon, J.2    Yeates, T.O.3
  • 21
    • 38349044104 scopus 로고    scopus 로고
    • Stability and binding properties of a modified thrombin binding aptamer
    • Pagano, B.; Martino, L.; Randazzo, A.; Giancola, C. Stability and binding properties of a modified thrombin binding aptamer Biophys. J. 2008, 94, 562-569
    • (2008) Biophys. J. , vol.94 , pp. 562-569
    • Pagano, B.1    Martino, L.2    Randazzo, A.3    Giancola, C.4
  • 23
    • 0031563773 scopus 로고    scopus 로고
    • Oligonucleotide inhibitors of human thrombin that bind distinct epitopes
    • Tasset, D. M.; Kubik, M. F.; Steiner, W. Oligonucleotide inhibitors of human thrombin that bind distinct epitopes J. Mol. Biol. 1997, 272, 688-698
    • (1997) J. Mol. Biol. , vol.272 , pp. 688-698
    • Tasset, D.M.1    Kubik, M.F.2    Steiner, W.3
  • 24
    • 77957932316 scopus 로고    scopus 로고
    • Thi binding effect of aptamers on thrombin
    • Zhou, G.; Huang, X.; Qu, Y. Thi binding effect of aptamers on thrombin Biochem. Eng. J. 2010, 52, 117-122
    • (2010) Biochem. Eng. J. , vol.52 , pp. 117-122
    • Zhou, G.1    Huang, X.2    Qu, Y.3
  • 25
    • 43949098703 scopus 로고    scopus 로고
    • Molecular assembly for high-performance bivalent nucleic acid inhibitor
    • Kim, Y.; Cao, Z.; Tan, W. Molecular assembly for high-performance bivalent nucleic acid inhibitor Proc. Natl. Acad. Sci. U.S.A. 2008, 105, 5664-5669
    • (2008) Proc. Natl. Acad. Sci. U.S.A. , vol.105 , pp. 5664-5669
    • Kim, Y.1    Cao, Z.2    Tan, W.3
  • 26
    • 56749092148 scopus 로고    scopus 로고
    • Anticoagulant characteristics of HD1-22, a bivalent aptamer that specifically inhibits thrombin and prothrombinase
    • Müller, J.; Freitag, D.; Mayer, G.; Pötzsch, B. Anticoagulant characteristics of HD1-22, a bivalent aptamer that specifically inhibits thrombin and prothrombinase J. Thromb. Haemost. 2008, 6, 2105-2112
    • (2008) J. Thromb. Haemost. , vol.6 , pp. 2105-2112
    • Müller, J.1    Freitag, D.2    Mayer, G.3    Pötzsch, B.4
  • 28
    • 33745144292 scopus 로고    scopus 로고
    • Conformational analysis of γ′ peptide (410-427) interactions with thrombin anion binding exosite II
    • Sabo, T. M.; Farrell, D. H.; Maurer, M. C. Conformational analysis of γ′ peptide (410-427) interactions with thrombin anion binding exosite II Biochemistry 2006, 45, 7434-7445
    • (2006) Biochemistry , vol.45 , pp. 7434-7445
    • Sabo, T.M.1    Farrell, D.H.2    Maurer, M.C.3
  • 30
    • 33845480738 scopus 로고    scopus 로고
    • Direct thrombin inhibitors a survey of recent developments
    • Schwienhorst, A. Direct thrombin inhibitors a survey of recent developments Cell. Mol. Life Sci. 2006, 63, 2773-2791
    • (2006) Cell. Mol. Life Sci. , vol.63 , pp. 2773-2791
    • Schwienhorst, A.1
  • 31
    • 0012908458 scopus 로고    scopus 로고
    • N2- and C8-substituted oligodeoxynucleotides with enhanced thrombin inhibitory activity in vitro and in vivo
    • He, G.-X.; Krawczyk, S. H.; Swaminathan, S.; Shea, R. G.; Dougherty, J. P.; Terhorst, T. N2- and C8-substituted oligodeoxynucleotides with enhanced thrombin inhibitory activity in vitro and in vivo J. Med. Chem. 1998, 41, 2234-2242
    • (1998) J. Med. Chem. , vol.41 , pp. 2234-2242
    • He, G.-X.1    Krawczyk, S.H.2    Swaminathan, S.3    Shea, R.G.4    Dougherty, J.P.5    Terhorst, T.6
  • 32
    • 77951230568 scopus 로고    scopus 로고
    • Dependence of aptamer activity on opposed terminal extensions: Improvement of light-regulation efficiency
    • Buff, M. C. R.; Schäfer, F.; Wulffen, B.; Müller, J.; Pötzsch, B.; Heckel, A.; Mayer, G. Dependence of aptamer activity on opposed terminal extensions: improvement of light-regulation efficiency Nucleic Acids Res. 2010, 38, 2111-2118
    • (2010) Nucleic Acids Res. , vol.38 , pp. 2111-2118
    • Buff, M.C.R.1    Schäfer, F.2    Wulffen, B.3    Müller, J.4    Pötzsch, B.5    Heckel, A.6    Mayer, G.7
  • 34
    • 14844353406 scopus 로고    scopus 로고
    • The effect of chemical modifications on the thermal stability of different G-quadruplex-forming oligonucleotides
    • Saccá, B.; Lacroix, L.; Mergny, J.-L. The effect of chemical modifications on the thermal stability of different G-quadruplex-forming oligonucleotides Nucleic Acids Res. 2005, 33, 1182-1192
    • (2005) Nucleic Acids Res. , vol.33 , pp. 1182-1192
    • Saccá, B.1    Lacroix, L.2    Mergny, J.-L.3
  • 35
    • 2942523093 scopus 로고    scopus 로고
    • Synthesis and characterization of a bunchy oligonucleotide forming a monomolecular parallel quadruplex structure in solution
    • Oliviero, G.; Borbone, N.; Galeone, A.; Varra, M.; Piccialli, G.; Mayol, L. Synthesis and characterization of a bunchy oligonucleotide forming a monomolecular parallel quadruplex structure in solution Tetrahedron Lett. 2004, 45, 4869-4872
    • (2004) Tetrahedron Lett. , vol.45 , pp. 4869-4872
    • Oliviero, G.1    Borbone, N.2    Galeone, A.3    Varra, M.4    Piccialli, G.5    Mayol, L.6
  • 39
    • 79951575374 scopus 로고    scopus 로고
    • Improved thrombin binding aptamer by incorporation of a single unlocked nucleic acid monomer
    • Pasternak, A.; Hernandez, F. J.; Rasmussen, L. M.; Vester, B.; Wengel, J. Improved thrombin binding aptamer by incorporation of a single unlocked nucleic acid monomer Nucleic Acids Res. 2011, 39, 1155-1164
    • (2011) Nucleic Acids Res. , vol.39 , pp. 1155-1164
    • Pasternak, A.1    Hernandez, F.J.2    Rasmussen, L.M.3    Vester, B.4    Wengel, J.5
  • 40
    • 35948981094 scopus 로고    scopus 로고
    • The Mitsunobu reaction: Origin, mechanism, improvements, and applications
    • But, T. Y. S.; Toy, P. H. The Mitsunobu reaction: origin, mechanism, improvements, and applications Chem. Asian J. 2007, 2, 1340-1355
    • (2007) Chem. Asian J. , vol.2 , pp. 1340-1355
    • But, T.Y.S.1    Toy, P.H.2
  • 42
    • 34447531353 scopus 로고    scopus 로고
    • The role of cations in determining quadruplex structure and stability
    • Neidle, S. Balasubramanian, S. RCS Publishing: London, UK
    • Neidle, S.; Balasubramanian, S. The role of cations in determining quadruplex structure and stability. In Quadruplex Nucleic Acids; Neidle, S.; Balasubramanian, S., Eds.; RCS Publishing: London, UK, 2006; pp 100-130.
    • (2006) Quadruplex Nucleic Acids , pp. 100-130
    • Neidle, S.1    Balasubramanian, S.2
  • 43
    • 47249114945 scopus 로고    scopus 로고
    • +-induced folding of models of human telomeric DNA into G-quadruplex structures
    • +-induced folding of models of human telomeric DNA into G-quadruplex structures Nucleic Acids Res. 2008, 36, 4191-4209
    • (2008) Nucleic Acids Res. , vol.36 , pp. 4191-4209
    • Chaires, J.B.1    Gray, R.D.2
  • 44
    • 0022931496 scopus 로고
    • The effect of bovine thrombomodulin on the specificity of bovine thrombin
    • Jakubowski, H. V.; Kline, M. D.; Owen, W. G. The effect of bovine thrombomodulin on the specificity of bovine thrombin J. Biol. Chem. 1986, 261, 3876-3882
    • (1986) J. Biol. Chem. , vol.261 , pp. 3876-3882
    • Jakubowski, H.V.1    Kline, M.D.2    Owen, W.G.3
  • 46
    • 33845988051 scopus 로고    scopus 로고
    • HD1, a thrombin-directed aptamer, binds exosite 1 on prothrombin with high affinity and inhibits its activation by prothrombinase
    • Kretz, C. A.; Stafford, A. R.; Fredenburgh, J. C.; Weitz, J. I. HD1, a thrombin-directed aptamer, binds exosite 1 on prothrombin with high affinity and inhibits its activation by prothrombinase J. Biol. Chem. 2006, 281, 37477-37485
    • (2006) J. Biol. Chem. , vol.281 , pp. 37477-37485
    • Kretz, C.A.1    Stafford, A.R.2    Fredenburgh, J.C.3    Weitz, J.I.4
  • 47
    • 0028298088 scopus 로고
    • Synthesis and antiviral study of cyclopentano[d]pyrimidine-2,4-diones and octahydroquinazoline-2,4-diones acyclic nucleosides as potential anti-HIV agents
    • Renault, J.; Laduree, D.; Robba, M. Synthesis and antiviral study of cyclopentano[d]pyrimidine-2,4-diones and octahydroquinazoline-2,4-diones acyclic nucleosides as potential anti-HIV agents Nucleosides, Nucleotides Nucleic Acids 1994, 13, 891-901
    • (1994) Nucleosides, Nucleotides Nucleic Acids , vol.13 , pp. 891-901
    • Renault, J.1    Laduree, D.2    Robba, M.3
  • 48
    • 34547567980 scopus 로고    scopus 로고
    • OligoCalc: An online oligonucleotide properties calculator
    • Kibbe, W. A. OligoCalc: an online oligonucleotide properties calculator Nucleic Acids Res. 2007, 35 (Suppl. 2) W43-W46
    • (2007) Nucleic Acids Res. , vol.35 , Issue.SUPPL. 2
    • Kibbe, W.A.1
  • 49
    • 79960698472 scopus 로고
    • Water suppression that works. Excitation sculpting using arbitrary wave forms and pulsed field gradients
    • Hwang, T. L.; Shaka, A. J. Water suppression that works. Excitation sculpting using arbitrary wave forms and pulsed field gradients J. Magn. Reson. Ser. A 1995, A112, 275
    • (1995) J. Magn. Reson. Ser. A , vol.112 , pp. 275
    • Hwang, T.L.1    Shaka, A.J.2
  • 50
    • 0000657561 scopus 로고    scopus 로고
    • Efficient multiple-solvent suppression for the study of the interactions of organic solvents with biomolecules
    • Dalvit, C. Efficient multiple-solvent suppression for the study of the interactions of organic solvents with biomolecules J. Biomol. NMR 1998, 11, 437
    • (1998) J. Biomol. NMR , vol.11 , pp. 437
    • Dalvit, C.1
  • 51
    • 0023769808 scopus 로고
    • Structure and energetics of ligand binding to proteins: E. coli dihydrofolate reductase-trimethoprim, a drug receptor system
    • Dauber-Osguthorpe, P.; Roberts, V. A.; Osguthorpe, D. J.; Wolff, J.; Genest, M.; Hagler, A. T. Structure and energetics of ligand binding to proteins: E. coli dihydrofolate reductase-trimethoprim, a drug receptor system Proteins 1988, 4, 31-47
    • (1988) Proteins , vol.4 , pp. 31-47
    • Dauber-Osguthorpe, P.1    Roberts, V.A.2    Osguthorpe, D.J.3    Wolff, J.4    Genest, M.5    Hagler, A.T.6
  • 54
    • 0036083830 scopus 로고    scopus 로고
    • The IMB Jena Image Library of Biological Macromolecules 2002 Update
    • Reichert, J.; Sühnel, J. The IMB Jena Image Library of Biological Macromolecules 2002 Update. Nucleic Acids Res. 2002, 30, 253-254.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 253-254
    • Reichert, J.1    Sühnel, J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.