DNA Profiling of Plants

Medicinal Plant Biotechnology: From Basic Research to Industrial Applications

Volumn , Issue , 2008, Pages 73-95

  Nybom Balsgard, Hilde ^a   Weising, Kurt ^b  

^a SWEDISH UNIVERSITY OF AGRICULTURAL SCIENCES   (Sweden)

^b UNIVERSITY OF KASSEL   (Germany)

Author keywords

Adulteration; DNA profiling; Production; Samples; Tissue

Indexed keywords

EID: 84889452100     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1002/9783527619771.ch5     Document Type: Chapter

References (123)

1. Ha, W.Y., Shaw, P.C., Liu, J., Yau, F.C.F., Wang, J. Authentication of Panax ginseng and Panax quinquefolius using amplified fragment length polymorphism (AFLP) and directed amplification with microsatellite region DNA (DAMD). J. Agric. Food Chem. 2002, 50, 1871-1875. [Application of two types of DNA markers, AFLP and DAMD, in an important crop.]
2. Baum, B.R., Mechanda, S., Livesey, J.F., Binns, S.E., Arnason, J.T. Predicting quantitative phytochemical markers in single Echinacea plants or clones from their DNA fingerprints. Phytochemistry 2001, 56, 543-549. [Application of AFLP, and analysis of linkage between DNA markers and phytochemical contents.]
3. Wallner, E., Weising, K., Rompf, R., Kahl, G., Kopp, B. Oligonucleotide fingerprinting and RAPD analysis of Achillea species: characterization and long-term monitoring of micropropagated clones. Plant Cell Rep. 1996, 15, 647-652.
4. Shaw, P.C., Ngan, F.N., But, P.P.H., Wang, J. Authentication of Chinese medicinal materials by DNA technology. J. Food Drug Anal. 1997, 5, 273-283. [Informative review paper about DNAbased identification of traditional Chinese medicinal plants.]
5. Henry, R.J. (Ed.), Plant Genotyping: The DNA Fingerprinting of Plants. CAB International Publishing, Wallingford, 2001. [Multi-authored book covering various DNA marker techniques (including SNPs) and their applications in plants.]
6. Avise, J.C. Molecular Markers, Natural History, and Evolution. Second edition. Sinauer Associates, Sunderland, 2004. [Survey of theoretical and practical aspects of DNA marker techniques.]
7. Weising, K., Nybom, H., Wolff, K., Kahl, G. DNA Fingerprinting in Plants: Principles, Methods and Applications. CRC Press, 2005. [In-depth descriptions of DNA-based marker methodology, data analyses and applications.]
8. Lin, J.-Z., Ritland, K. Flower petals allow simpler and better isolation of DNA for plant RAPD analyses. Plant Mol. Biol. Rep. 1995, 13, 210-213.
9. Simel, E.J., Saidak, L.R., Tuskan, G.A. Method for extracting genomic DNA from non-germinated gymnosperm and angiosperm pollen. BioTechniques 1997, 22, 390-394.
10. Kang, H.W., Cho, Y.G., Yoon, U.H., Eun, M.Y. A rapid DNA extraction method for RFLP and PCR analysis from a single dry seed. Plant Mol. Biol. Rep. 1998, 16, 90(1-9).
11. Kumar, A., Pushpangadan, P., Mehrotra, S. Extraction of high-molecular-weight DNA from dry root tissue of Berberis lycium suitable for RAPD. Plant Mol. Biol. Rep. 2003, 21, 309a-309d.
12. Syamkumar, S., Lowarence, B., Sasikumar, B. Isolation and amplification of DNA from rhizomes of turmeric and ginger. Plant Mol. Biol. Rep. 2003, 21, 171a-171e.
13. Wulff, E.G., Torres, S., Vigil, E.G. Protocol for DNA extraction from potato tubers. Plant Mol. Biol. Rep. 2002, 20, 187a-187e.
14. Deguilloux, M.F., Pemonge, M.H., Petit, R.J. Novel perspectives in wood certification and forensics: dry wood as a source of DNA. Proc. R. Soc. Lond. B 2002, 269, 1039-1046.
15. Reynolds, M.M., Williams, C.G. Extracting DNA from submerged pine wood. Genome 2004, 47, 994-997.
16. Rogstad, S.H. Saturated NaCl-CTAB solution as a means of field preservation of leaves for DNA analyses. Taxon 1992, 41, 701-708.
17. Chase, M.W., Hills, H.H. Silica gel: an ideal material for field preservation of leaf samples for DNA studies. Taxon 1991, 40, 215-220.
18. Khanuja, S.P.S., Shasany, A.K., Darokar, M.P., Kumar, S. Rapid isolation of DNA from dry and fresh samples of plants producing large amounts of secondary metabolites and essential oils. Plant Mol. Biol. Rep. 1999, 17, 74(1-7).
19. Savolainen, V., Cuénoud, P., Spichiger, R., Martinez, M.D., Crèvecoeur, M., Manen, J.-F. The use of herbarium specimens in DNA phylogenetics: evaluation and improvement. Plant Syst. Evol. 1995, 197, 87-98.
20. Biss, P., Freeland, J., Silvertown, J., McConway, K., Lutman, P. Successful amplification of rice chloroplast microsatellites from century-old grass samples from the park grass experiment. Plant Mol. Biol. Rep. 2003, 21, 249-257.
21. Singh, B.M., Ahuja, P.S. Isolation and PCR amplification of genomic DNA from market samples of dry tea. Plant Mol. Biol. Rep. 1999, 17, 171-178.
22. Murray, M.G., Thompson, W.F. Rapid isolation of high molecular weight plant DNA. Nucleic Acids Res. 1980, 8, 4321-4325.
23. Pirttilä, A.M., Hirsikorpi, M., Kämäräinen, T., Jaakola, L., Hohtola, A. DNA isolation methods for medicinal and aromatic plants. Plant Mol. Biol. Rep. 2001, 19, 273a-273f.
24. Sangwan, N.S., Sangwan, R.S., Kumar, S. Isolation of genomic DNA from the antimalarial plant Artemisia annua. Plant Mol. Biol. Rep. 1998, 16, 365(18).
25. Sangwan, R.S., Yadav, U., Sangwan, N.S. Isolation of genomic DNA from defatted oil seed residue of opium poppy (Papaver somniferum). Plant Mol. Biol. Rep. 2000, 18, 265-270.
26. Mullis, K.B., Ferré, F., Gibbs, R.A. (Eds.), The Polymerase Chain Reaction. Birkhäuser, Basel, 1994.
27. Baldwin, B.G., Sanderson, M.J., Porter, J.M., Wojciechowski, M.F., Campbell, C.S., Donoghue, M.J. The ITS region of nuclear ribosomal DNA: a valuable source of evidence on angiosperm phylogeny. Ann. Missouri Bot. Gard. 1995, 82, 247-277.
28. Fushimi, H., Komatsu, K., Namba, T., Isobe, M. Genetic heterogeneity of ribosomal RNA gene and matK gene in Panax notoginseng. Planta Med. 2000, 66, 659-661.
29. Lau, D.T.W., Shaw, P.C., Wang, J., But, P.P.H. Authentication of medicinal Dendrobium species by the internal transcribed spacer of ribosomal DNA. Planta Med. 2001, 67, 456-460. [Good example of the application of DNA sequencing for species authentication.]
30. Cui, X.M., Lo, C.K., Yip, K.L., Dong, T.T.X., Tsim, K.W.K. Authentication of Panax notoginseng by 5S-rRNA spacer domain and random amplified polymorphic DNA (RAPD) analysis. Planta Med. 2003, 69, 584-586.
31. Crockett, S.L., Douglas, A.W., Scheffler, B.E., Khan, I.A. Genetic profiling of Hypericum (St. John's Wort) species by nuclear ribosomal ITS sequence analysis. Planta Med. 2004, 70, 929-935. [Interesting example of the application of DNA sequencing in a medicinal plant.]
32. Weising, K., Kahl, G. Hybridizationbased microsatellite fingerprinting of plants and fungi. In: Caetano-Anollés. G., Gresshoff, P.M. (Eds.), DNA Markers: Protocols, Applications, and Overviews. Wiley-VCH, New York, 1998, pp. 27-54.
33. Welsh, J., McClelland, M. Fingerprinting genomes using PCR with arbitrary primers. Nucleic Acids Res. 1990, 18, 7213-7218.
34. Williams, J.G.K., Kubelik, A.R., Livak, K.J., Rafalski, J.A., Tingey, S.V. DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Res. 1990, 18, 6231-6235.
35. Caetano-Anollés, G., Bassam, B.J., Gresshoff, P.M. High resolution DNA amplification fingerprinting using very short arbitrary oligonucleotide primers. Bio/Technology 1991, 9, 553-557.
36. Penner, G.A., Bush, A., Wise, R., Kim, W., Domier, L., Kasha, K., Laroche, A., Scoles, G., Molnar, S.J., Fedak, G. Reproducibility of random amplified polymorphic DNA (RAPD) analysis among laboratories. PCR Methods and Applications 1993, 2, 341-345.
37. Sangwan, R.S., Sangwan, N.S., Jain, D.C., Kumar, S., Ranade, S.A. RAPD profile based genetic characterization of chemotypic variants of Artemisia annua L. Biochem. Molec. Biol. Int. 1999, 47, 935-944. [Application of RAPD, and analysis of the relationship between markers and the chemical contents of the plant material.]
38. Nieri, P., Adinolfi, B., Morelli, I., Breschi, M.C., Simoni, G., Martinotti, E. Genetic characterization of the three medicinal Echinacea species using RAPD analysis. Planta Med. 2003, 69, 685-686.
39. Shoyama, Y., Zhu, X.X., Nakai, R., Shiraishi, S., Kohda, H. Micropropaga tion of Panax notoginseng by somatic embryogenesis and RAPD analysis of regenerated plantlets. Plant Cell Rep. 1997, 16, 450-453.
40. Shim, Y.-H., Choi, J.-H., Park, C.-D., Lim, C.-J., Cho, J.-H., Kim, H.-J. Molecular differentiation of Panax species by RAPD analysis. Arch. Pharm. Res. 2003, 26, 601-605.
41. Zietkiewicz, E., Rafalski, A., Labuda, D. Genome fingerprinting by simple sequence repeat (SSR)-anchored polymerase chain reaction amplification. Genomics 1994, 20, 176-183.
42. Gupta, M., Chyi, Y.-S., Romero-Severson, J., Owen, J.L. Amplification of DNA markers from evolutionary diverse genomes using single primers of simplesequence repeats. Theoret. Appl. Genet. 1994, 89, 998-1006.
43. Meyer, W., Mitchell, T.G., Freedman, E.Z., Vilgalys, R. Hybridization probes for conventional DNA fingerprinting used as single primers in the polymerase chain reaction to distinguish strains of Cryptococcus neoformans. J. Clin. Microbiol. 1993, 31, 2274-2280.
44. Weising, K., Atkinson, R.G., Gardner, R.C. Genomic fingerprinting by microsatellite-primed PCR: a critical evaluation. PCR Methods and Applications 1995, 4, 249-255.
45. Goldstein, D.B., Schlötterer, C. (Eds.), Microsatellites: Evolution and Applications. Oxford University Press, Oxford, UK, 1999.
46. Fisher, P., Gardner, R.C., Richardson, T.E. Single locus microsatellites isolated using 5' anchored PCR. Nucleic Acids Res. 1996, 24, 4369-4371.
47. Feyissa, T., Nybom, H., Bartish, I., Welander, M. Analysis of genetic diversity in the endangered tropical tree species Hagenia abyssinica using ISSR markers. Genet. Res. Crop Evol. (in press).
48. Zabeau, M., Vos, P. Selective restriction fragment amplification: a general method for DNA fingerprinting. European Patent Application EP 0534858, 1993.
49. Vos, P., Hogers, R., Bleeker, M., Reijans, M., Van de Lee, T., Hornes, M., Frijters, A., Pot, J., Peleman, J., Kuiper, M., Zabeau, M. AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res. 1995, 23, 4407-4414.
50. Akkaya, M.S., Bhagwat, A.A., Cregan, P.B. Length polymorphisms of simple sequence repeat DNA in soybean. Genetics 1992, 132, 1131-1139.
51. Macaulay, M., Ramsay, L., Powell, W., Waugh, R. A representative, highly informative "genotyping set" of barley SSRs. Theoret. Appl. Genet. 2001, 102, 801-809.
52. Tang, S., Kishore, V.K., Knapp, S.J. PCRmultiplexes for a genome-wide framework of simple sequence repeat marker loci in cultivated sunflower. Theoret. Appl. Genet. 2003, 107, 6-19.
53. Zane, L., Bargelloni, L., Patarnello, T. Strategies for microsatellite isolation: a review. Mol. Ecol. 2002, 11, 1-16.
54. Squirrell, J., Hollingsworth, P.M., Woodhead, M., Russell, J., Lowe, A.J., Gibby, M., Powell, W. How much effort is required to isolate nuclear microsatellites from plants? Mol. Ecol. 2003, 12, 1339-1348.
55. Holton, T.A., Christopher, J.T., McClure, L., Harker, N., Henry, R.J. Identification and mapping of polymorphic SSR markers from expressed gene sequences of barley and wheat. Mol. Breed. 2002, 9, 63-71.
56. Yu, J.-K., Dake, T.M., Singh, S., Benscher, D., Li, W., Gill, B., Sorrells, M.E. Development and mapping of ESTderived simple sequence repeat markers for hexaploid wheat. Genome 2004, 47, 805-818.
57. Gilmore, S., Peakall, R., Robertson, J. Short tandem repeat (STR) DNA markers are hypervariable and informative in Cannabis sativa: implications for forensic investigations. Forens. Sci. Int. 2003, 131, 65-74. [Application of microsatellite DNA markers, and an analysis of the relationship between these markers and chemical contents in the plant material.]
58. Shokeen, B., Sethy, N.K., Choudhary, S., Bhatia, S. Development of STMS markers from the medicinal plant Madagascar periwinkle [Catharanthus roseus (L.) G. Don]. Mol. Ecol. Notes 2005, 5, 818-820.
59. Demesure, B., Sozi, N., Petit, R.J. A set of universal primers for amplification of polymorphic non-coding regions of mitochondrial and chloroplast DNA in plants. Mol. Ecol. 1995, 4, 129-131.
60. Dumolin-Lapègue, S., Pemonge, M.-H., Petit, R.J. An enlarged set of consensus primers for the study of organelle DNA in plants. Mol. Ecol. 1997, 6, 393-397.
61. Duminil, J., Pemonge, M.-H., Petit, R.J. A set of 35 consensus primer pairs amplifying genes and introns of plant mitochondrial DNA. Mol. Ecol. Notes 2002, 2, 428-430.
62. Konieczny, A., Ausubel, F.M. A procedure for mapping Arabidopsis mutations using co-dominant ecotype-specific PCR-based markers. Plant J. 1993, 4, 403-410.
63. Witsenboer, H., Vogel, J., Michelmore, R.W. Identification, genetic localization, and allelic diversity of selectively amplified microsatellite polymorphic loci in lettuce and wild relatives (Lactuca spp.). Genome 1997, 40, 923-936.
64. Waugh, R., McLean, K., Flavell, A.J., Pearce, S.R., Kumar, A., Thomas, B.B.T., Powell, W. Genetic distribution of Bare-1-like retrotransposable elements in the barley genome revealed by sequencespecific amplification polymorphisms (S-SAP). Mol. Gen. Genet. 1997, 253, 687-694.
65. Gupta, P.K., Roy, J.K., Prasad, M. Single nucleotide polymorphisms: a new paradigm for molecular marker technology and DNA polymorphism detection with emphasis on their use in plants. Curr. Sci. 2001, 80, 524-535.
66. Brumfield, R.T., Beerli, P., Nickerson, D.A., Edwards, S.V. The utility of single nucleotide polymorphisms in inferences of population history. Trends Ecol. Evol. 2003, 18, 249-256.
67. Bhattramaki, D., Rafalski, A. Discovery and application of single nucleotide polymorphism markers in plants. In: Henry, R.J. (Ed.), Plant Genotyping: The DNA Fingerprinting of Plants. CABI Publishing, Wallingford, 2001, pp. 179-192.
68. Somers, D.J., Kirkpatrick, R., Moniwa, M., Walsh, A. Mining single-nucleotide polymorphisms from hexaploid wheat ESTs. Genome 2003, 49, 431-437.
69. Sunnucks, P., Wilson, A.C.C., Beheregaray, L.B., Zenger, K., French, J., Taylor, A.C. SSCP is not so difficult: the application and utility of single-stranded conformation polymorphism in evolutionary biology and molecular ecology. Mol. Ecol. 2000, 9, 1699-1710.
70. Bensch, S., Akesson, S., Irwin, D.E. The use of AFLPs to find an informative SNP: genetic differences across a migratory divide in willow warblers. Mol. Ecol. 2002, 11, 2359-2366.
71. Kwok, P.-Y. Methods for genotyping single nucleotide polymorphisms. Annu. Rev. Genomics Hum. Genet. 2001, 2, 235-258.
72. Syvanen, A.C. Genotyping single nucleotide polymorphisms. Nature Rev. Genet. 2001, 2, 930-942.
73. Schena, M. Microarray Analysis. Wiley-Liss, Inc., USA, 2003.
74. Mantripragada, K.K., Buckley, P.G., de Stahl, T.D., Dumanski, J.P. Genomic microarrays in the spotlight. Trends Genet. 2004, 20, 87-94.
75. Schmid, K.J., Sörensen, T.R., Stracke, R., Törjek, O., Altmann, T., Mitchell-Olds, T., Weisshaar, B. Large-scale identification and analysis of genome wide singlenucleotide polymorphisms for mapping in Arabidopsis thaliana. Genome Res. 2003, 13, 1250-1257.
76. Nasu, S., Suzuki, J., Ohta, R., Hasegawa, K., Yui, R., Kitazawa, N., Monna, L., Minobe, Y. Search for and analysis of single nucleotide polymorphisms (SNPs) in rice (Oryza sativa, Oryza rufipogon) and establishment of SNP markers. DNA Res. 2002, 9, 163-171.
77. Carles, M., Lee, T., Moganti, S., Lenigk, R., Tsim, K.W.K., Ip, N.Y., Hsing, I.-M., Sucher, N.J. Chips and Qi: microcomponent-based analysis in traditional Chinese medicine. Fresenius J. Anal. Chem. 2001, 371, 190-194. [One of the first studies demonstrating the applicability of DNA microarray technology for DNA sequence-based identification of medicinal plants.]
78. Carles, M., Cheung, M.K.L., Moganti, S., Dong, T.T.X., Tsim, K.W., Ip, N.Y., Sucher, N.J. A DNA microarray for the authentication of toxic traditional Chinese medicinal plants. Planta Med. 2005, 71, 580-584. [Application of silicon chip-based DNA microarray analysis.]
79. Zhang, Y.B., Wang, J., Wang, Z.T., But, P.P.H., Shaw, P.C. DNA microarray for identification of the herb of Dendrobium species from Chinese medicinal formulations. Planta Med. 2003, 69, 1172-1174.
80. Lee, T.M.H., Hsing, I.-M. Sequencespecific electrochemical detection of asymmetric PCR amplicons of traditional Chinese medicinal plant DNA. Anal. Chem. 2002, 74, 5057-5062. [Development of a hand-held device for SNP-based discrimination of plant material.]
81. Ngan, F., Shaw, P., But, P., Wang, J. Molecular authentication of Panax species. Phytochemistry 1999, 50, 787-791. [Application of 5.8 S rDNA sequencing for root discrimination.]
82. Artyukova, E.V., Kozyrenko, M.M., Koren, O.G., Muzarok, T.I., Reunova, G.D., Zhuravlev, Y.N. RAPD and allozyme analysis of genetic diversity in Panax ginseng C.A. Meyer and P. quinquefolius L. Russian J. Genet. 2004, 40, 178-185.
83. Tochika-Komatsu, Y., Asaka, I., Ii, I. A random amplified polymorphic DNA (RAPD) primer to assist the identification of a selected strain, Aizu K-111 of Panax ginseng and the sequence amplified. Biol. Pharmaceut. Bull. 2001, 24, 1210-1213.
84. Debener, T., Janakiram, T., Mattiesch, L. Sports and seedlings of rose varieties analysed with molecular markers. Plant Breed. 2000, 119, 71-74.
85. Franks, T., Botta, R., Thomas, M.R. Chimerism in grapevines: implications for cultivar identity, ancestry and genetic improvement. Theoret. Appl. Genet. 2002, 104, 192-199.
86. Ipek, M., Ipek, A., Simon, P.W. Comparison of AFLPs, RAPDs, and isozymes for diversity assessment of garlic and detection of putative duplicates in germplasm collections. J. Am. Soc. Hort. Sci. 2003, 128, 246-252. [Analysis of genetic identity determined with different kinds of molecular markers.]
87. Diwan, B., Cregan, P.B. Automated sizing of fluorescent-labeled simple sequence repeat (SSR) markers to assay genetic variation in soybean. Theoret. Appl. Genet. 1997, 95, 723-733.
88. Excoffier, L., Smouse, P.E., Quattro, J.M. Analysis of molecular variance inferred from metric distances among DNA haplotypes: applications to human mitochondrial DNA restriction data. Genetics 1992, 131, 479-491.
89. Echeverrigeray, S., Agostini, G., Atti-Sefini, L., Paroul, N., Pauletti, G.F., dos Santos, A.C.A. Correlation between the chemical and genetic relationships among commercial thyme cultivars. J. Agric. Food Chem. 2001, 49, 4220-4223. [Application of RAPD, and analysis of the relationship between DNA markers and oil content in the plant material.]
90. Haluskova, J., Kosuth, J. RAPD analysis of somaclonal and natural DNA variation in Hypericum perforatum L. Acta Biol. Cracov Ser. Botanica. 2003, 45, 101-104.
91. Kuddus, R.H., Kuddus, N.N., Dvorchik, I. DNA polymorphism in the living fossil Ginkgo biloba from the eastern United States. Genome 2002, 45, 8-12. [Application of RAPD, as well as the utilisation of a gel-excised DNA band for probing.]
92. Nybom, H. Comparison of different nuclear DNA markers for estimating intraspecific genetic diversity in plants. Mol. Ecol. 2004, 13, 1143-1155. [Compilation and analysis of population genetic studies carried out using various DNA marker methods, comparison of dominantly and codominantly inherited marker methods.]
93. Grassi, F., Imazio, S., Gomarasca, S., Citterio, S., Aina, R., Sgorbati, S., Sala, F., Patrignani, G., Labra, M. Population structure and genetic variation within Valeriana wallrothii Kreyer in relation to different ecological locations. Plant Sci. 2004, 166, 1437-1441. [Application of AFLP and chloroplast DNA microsatellite markers.]
94. Nebauer, S.G., del Castillo-Agudo, L., Segura, J. RAPD variation within and among natural populations of out crossing willow-leaved foxglove (Digitalis obscura L.). Theoret. Appl. Genet. 1999, 98, 985-994.
95. Muluvi, G.M., Sprent, J.I., Soranzo, N., Provan, J., Odee, D., Folkard, G., McNicol, J.W., Powell, W. Amplified fragment length polymorphism (AFLP) analysis of genetic variation in Moringa oleifera Lam. Mol. Ecol. 1999, 8, 463-470.
96. Semagn, K., Bjørnstad, A., Stedje, B. Genetic diversity and differentiation in Ethiopian populations of Phytolacca dodecandra as revealed by AFLP and RAPD analyses. Genet. Crop Res. Evol. 2003, 50, 649-661.
97. Singh, A., Chaudhary, A., Srivastava, P.S., Lakshmikumaran, M. Comparison of AFLP and SAMPL markers for assessment of intra-population genetic variation in Azadirachta indica A. Juss. Plant Sci. 2002, 162, 17-25.
98. Rossetto, M., Slade, R.W., Baverstock, P.R., Henry, R.J., Lee, L.S. Microsatellite variation and assessment of genetic structure in tea tree (Melaleuca alternifolia-Myrtaceae). Mol. Ecol. 1999, 8, 633-643.
99. Arnholdt-Schmitt, B. RAPD analysis: a method to investigate aspects of the reproductive biology of Hypericum perforatum L. Theoret. Appl. Genet. 2000, 100, 906-911.
100. Mayo, G.M., Langridge, P. Modes of reproduction in Australian populations of Hypericum perforatum L. (St. John's wort) revealed by DNA fingerprinting and cytological methods. Genome 2003, 46, 573-579.
101. Hu, J., Zhu, J., Xu, H.M. Methods of constructing core collections by stepwise clustering with three sampling strategies based on genotypic values of crops. Theoret. Appl. Genet. 2000, 101, 264-268.
102. Garkava-Gustavsson, L., Persson, H.A., Nybom, H., Rumpunen, K., Gustavsson, B.A., Bartish, I.V. RAPD-based analysis of genetic diversity and selection of lingonberry (Vaccinium vitis-idaea L.) material for ex situ conservation. Genet. Res. Crop Evol. 2005, 52, 723-735.
103. Zhang, D.P., Huaman, Z., Rodriguez, F., Rossel, G., Ghislain, M. Identifying duplicates in sweet potato (Ipomoea batatas (L.) Lam) cultivars using RAPD. Acta Hort. 2001, 546, 535-541.
104. Dawson, I.K., Powell, W. Genetic variation in the Afromontane tree Prunus africana, an endangered medicinal species. Mol. Ecol. 1999, 8, 151-156.
105. Zhou, S.L., Xiong, G.M., Li, Z.Y., Wen, J. Loss of genetic diversity of domesticated Panax notoginseng F H Chen as evidenced by ITS sequence and AFLP polymorphism: a comparative study with P. stipuleatus H T Tsai et K M Feng. J. Integrat. Plant Biol. 2005, 47, 107-115.
106. Pilepic, K.H. Analysis of chloroplast DNA variability among some Hypericum species in Croatia. Periodicum Biologorum 2002, 104, 457-462.
107. Bartish, I.V., Jeppsson, N., Swenson, U., Nybom, H. Phylogeny of Hippophae (Elaeagnaceae) inferred from parsimony analysis of chloroplast DNA and morphology. Syst. Bot. 2002, 27, 41-54.
108. Yoo, K.O., Malla, K.J., Wen, J. Chloroplast DNA variation of Panax (Araliaceae) in Nepal and its taxonomic implications. Brittonia 2001, 53, 447-453.
109. Després, L., Gielly, L., Redoutet, B., Taberlet, P. Using AFLP to resolve phylogenetic relationships in a morphologically diversified plant species complex when nuclear and chloroplast sequences fail to reveal variability. Mol. Phylogenet. Evol. 2003, 27, 85-196.
110. Urbatsch, L.E., Baldwin, B.G., Donoghue, M.J. Phylogeny of the coneflowers and relatives (Heliantheae: Asteraceae) based on nuclear rDNA internal transcribed spacer (ITS) sequences and chloroplast DNA restriction site data. Syst. Bot. 2000, 25, 539-565.
111. Kim, D.-H., Heber, D., Still, D.W. Genetic diversity of Echinacea species based upon amplified fragment length polymorphism markers. Genome 2004, 47, 102-111.
112. Bussell, J.D., Waycott, M., Chappill, J.A. Arbitrarily amplified DNA markers as characters for phylogenetic inference. Perspect. Plant Ecol. Evol. Syst. 2005, 7, 3-26.
113. Koopman, W.J.M. Phylogenetic signal in AFLP data sets. Syst. Biol. 2005, 54, 197-217.
114. Mechanda, S.M., Baum, B.R., Johnson, D.A., Arnason, J.T. Sequence assessment of comigrating AFLP bands in Echinacea-implications for comparative biological studies. Genome 2004, 47, 15-25.
115. Persson, H.A., Nybom, H. Genetic sex determination and RAPD marker segregation in the dioecious species sea buckthorn (Hippophae rhamnoides). Hereditas 1998, 129, 45-51.
116. Mandolino, G., Carboni, A., Bagatta, M., Moliterni, V.M.C., Ranalli, P. Occurrence and frequency of putatively Y chromosome linked DNA markers of Cannabis sativa L. Euphytica 2002, 126, 211-218.
117. Meksem, K., Kahl, G. The Handbook of Genome Mapping. Wiley-VCH, USA, 2004.
118. Göcmen, B., Jermstad, K.D., Neale, D.B., Kaya, Z. Development of random amplified polymorphic DNA markers for genetic mapping of Pacific yew (Taxus brevifolia). Can. J. Forest Res. 1996, 26, 497-503.
119. Zewdie, Y., Havey, M.J., Prince, J.P., Jenderek, M.M. The first genetic linkages among expressed regions in the garlic genome. J. Am. Soc. Hort. Sci. 2005, 130, 569-574. [Genetic mapping with different types of DNA markers and identification of a locus for male fertility.]
120. Ipek, M., Ipek, A., Almquist, S.G., Simon, P.W. Demonstration of linkage and development of the first low-density genetic map of garlic, based on AFLP markers. Theoret. Appl. Genet. 2005, 110, 228-236. [Genetic mapping with both DNA markers (AFLP) and genes for chemical contents.]
121. Hansen, M., Kraft, T., Christansson, M., Nilsson, N.O. Evaluation of AFLP in Beta. Theoret. Appl. Genet. 1999, 98, 845-852.
122. Paran, I., Michelmore, R.W. Development of reliable PCR-based markers linked to downy mildew resistance genes in lettuce. Theoret. Appl. Genet. 1993, 85, 985-993.
123. Xu, M., Huaracha, E., Korban, S.S. Development of sequence-characterized amplified regions (SCARs) from amplified fragment length polymorphism (AFLP) markers tightly linked to the Vf gene in apple. Genome 2001, 44, 63-70.