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Volumn 13, Issue 6 A, 2003, Pages 1250-1257

Large-scale identification and analysis of genome-wide single-nucleotide polymorphisms for mapping in Arabidopsis thaliana

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA;

EID: 0038817772     PISSN: 10889051     EISSN: None     Source Type: Journal    
DOI: 10.1101/gr.728603     Document Type: Article
Times cited : (175)

References (32)
  • 1
    • 0033936751 scopus 로고    scopus 로고
    • Naturally occurring variation in Arabidopsis: An underexploited resource for plant genetics
    • Alonso-Blanco, C. and Koornneef, M. 2000. Naturally occurring variation in Arabidopsis: An underexploited resource for plant genetics. Trends Plant Sci. 5: 22-29.
    • (2000) Trends Plant Sci. , vol.5 , pp. 22-29
    • Alonso-Blanco, C.1    Koornneef, M.2
  • 2
    • 0031747476 scopus 로고    scopus 로고
    • Analysis of natural allelic variation at flowering time loci in the Landsberg erecta and Cape Verde islands ecotypes of Arabidopsis thaliana
    • Alonso-Blanco, C., El-Assal, S.E.-D., Coupland, G., and Koornneef, M. 1998a. Analysis of natural allelic variation at flowering time loci in the Landsberg erecta and Cape Verde islands ecotypes of Arabidopsis thaliana. Genetics 149: 749-764.
    • (1998) Genetics , vol.149 , pp. 749-764
    • Alonso-Blanco, C.1    El-Assal, S.E.-D.2    Coupland, G.3    Koornneef, M.4
  • 3
    • 7144259092 scopus 로고    scopus 로고
    • Development of an AFLP based linkage map of Ler, Col and Cvi Arabidopsis thaliana ecotypes and construction of a Ler/Cvi recombinant inbred line population
    • Alonso-Blanco, C., Peelers, A., Koornneef, M., Lister, C., Dean, C., van den Bosch, N., Pot, J., and Kuiper, M. 1998b. Development of an AFLP based linkage map of Ler, Col and Cvi Arabidopsis thaliana ecotypes and construction of a Ler/Cvi recombinant inbred line population. Plant J. 14: 259-271.
    • (1998) Plant J. , vol.14 , pp. 259-271
    • Alonso-Blanco, C.1    Peelers, A.2    Koornneef, M.3    Lister, C.4    Dean, C.5    van den Bosch, N.6    Pot, J.7    Kuiper, M.8
  • 4
    • 0034649566 scopus 로고    scopus 로고
    • Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
    • The Arabidopsis Genome Initiative
    • The Arabidopsis Genome Initiative. 2000. Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408: 796-815.
    • (2000) Nature , vol.408 , pp. 796-815
  • 5
    • 0034727107 scopus 로고    scopus 로고
    • An SNP map of the human genome generated by reduced representation sequencing
    • Altshuler, D., Pollara, V., Van Etten, C.C.W., Baldwin, J., Linton, L., and Lander, E. 2000. An SNP map of the human genome generated by reduced representation sequencing. Nature 407: 513-516.
    • (2000) Nature , vol.407 , pp. 513-516
    • Altshuler, D.1    Pollara, V.2    Van Etten, C.C.W.3    Baldwin, J.4    Linton, L.5    Lander, E.6
  • 6
    • 0031961197 scopus 로고    scopus 로고
    • Genetic variation between and within populations of Arabidopsis thaliana
    • Bergelson, J., Stahl, E., Dudeck, S., and Kreitman, M. 1998. Genetic variation between and within populations of Arabidopsis thaliana. Genetics 148: 1311-1323.
    • (1998) Genetics , vol.148 , pp. 1311-1323
    • Bergelson, J.1    Stahl, E.2    Dudeck, S.3    Kreitman, M.4
  • 7
    • 0029897488 scopus 로고    scopus 로고
    • PairWise and SearchWise: Finding the optimal alignment in a simultaneous comparison of a protein profile against all DNA translation frames
    • Birney, E., Thompson, J., and Gibson, T. 1996. PairWise and SearchWise: Finding the optimal alignment in a simultaneous comparison of a protein profile against all DNA translation frames. Nucleic Acids. Res. 24: 2730-2739.
    • (1996) Nucleic Acids. Res. , vol.24 , pp. 2730-2739
    • Birney, E.1    Thompson, J.2    Gibson, T.3
  • 8
    • 0033032103 scopus 로고    scopus 로고
    • AFLP analysis of genetic diversity within and between Arabidopsis thaliana ecotypes
    • Breyne, P., Rombaut, D., Van Gysel, A., Van Montagnu, M., and Gerats, T. 1999. AFLP analysis of genetic diversity within and between Arabidopsis thaliana ecotypes. Mol. Gen. Genet. 261: 627-634.
    • (1999) Mol. Gen. Genet. , vol.261 , pp. 627-634
    • Breyne, P.1    Rombaut, D.2    Van Gysel, A.3    Van Montagnu, M.4    Gerats, T.5
  • 9
    • 0035257236 scopus 로고    scopus 로고
    • Association study designs for complex diseases
    • Cardon, L. and Bell, J. 2001. Association study designs for complex diseases. Nat. Rev. Genet. 2: 91-98.
    • (2001) Nat. Rev. Genet. , vol.2 , pp. 91-98
    • Cardon, L.1    Bell, J.2
  • 11
    • 0031955518 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred. I. Accuracy assessment
    • Ewing, B., Hillier, L., Wendl, M., and Green, P. 1998. Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res. 8: 175-185.
    • (1998) Genome Res. , vol.8 , pp. 175-185
    • Ewing, B.1    Hillier, L.2    Wendl, M.3    Green, P.4
  • 12
    • 0000122573 scopus 로고
    • PHYLIP-Phylogeny Inference Package (Version 3.2)
    • Felsenstein, J. 1989. PHYLIP-Phylogeny Inference Package (Version 3.2). Cladistics 5: 164-166.
    • (1989) Cladistics , vol.5 , pp. 164-166
    • Felsenstein, J.1
  • 13
    • 0031732094 scopus 로고    scopus 로고
    • A computer program for aligning a cDNA sequence with a genomic sequence
    • Florea, L., Hartzell, G., Zhang, Z., Rubin, G., and Miller, W. 1998. A computer program for aligning a cDNA sequence with a genomic sequence. Genome Res. 8: 967-974.
    • (1998) Genome Res. , vol.8 , pp. 967-974
    • Florea, L.1    Hartzell, G.2    Zhang, Z.3    Rubin, G.4    Miller, W.5
  • 14
    • 0036263045 scopus 로고    scopus 로고
    • Sequence variation arld haplotype structure surrounding the flowering time locus FRI in Arabidopsis thaliana
    • Hagenblad, J. and Nordborg, M. 2002. Sequence variation arld haplotype structure surrounding the flowering time locus FRI in Arabidopsis thaliana. Genetics 161: 289-298.
    • (2002) Genetics , vol.161 , pp. 289-298
    • Hagenblad, J.1    Nordborg, M.2
  • 15
    • 0036021403 scopus 로고    scopus 로고
    • Recombination and gene conversion in a 170 kb genomic region of Arabidopsis thaliana
    • Haubold, B., Kroymann, J., Ratzka, A., Mitchell-Olds, T., and Wiehe, T. 2002. Recombination and gene conversion in a 170 kb genomic region of Arabidopsis thaliana. Genetics 161: 1269-1278.
    • (2002) Genetics , vol.161 , pp. 1269-1278
    • Haubold, B.1    Kroymann, J.2    Ratzka, A.3    Mitchell-Olds, T.4    Wiehe, T.5
  • 17
    • 0034123358 scopus 로고    scopus 로고
    • Nucleotide variation at the CHALCONE ISOMERASE locus in Arabidopsis thaliana
    • Kuittinen, H. and Aguadé, M. 2000. Nucleotide variation at the CHALCONE ISOMERASE locus in Arabidopsis thaliana. Genetics 155: 863-872.
    • (2000) Genetics , vol.155 , pp. 863-872
    • Kuittinen, H.1    Aguadé, M.2
  • 18
    • 0000012426 scopus 로고
    • Recombinant inbred lines for mapping RFLP and phenotypic markers in Arabidopsis thaliana
    • Lister, C. and Dean, C. 1993. Recombinant inbred lines for mapping RFLP and phenotypic markers in Arabidopsis thaliana. Plant J. 4: 745-750.
    • (1993) Plant J. , vol.4 , pp. 745-750
    • Lister, C.1    Dean, C.2
  • 19
    • 0033926906 scopus 로고    scopus 로고
    • Positional cloning in Arabidopsis. Why it feels good to have a genome initiative working for you
    • Lukowitz, W., Gillmor, C., and Scheible, W.-R. 2000. Positional cloning in Arabidopsis. Why it feels good to have a genome initiative working for you. Plant Phys. 123: 795-805.
    • (2000) Plant Phys. , vol.123 , pp. 795-805
    • Lukowitz, W.1    Gillmor, C.2    Scheible, W.-R.3
  • 21
    • 0031761342 scopus 로고    scopus 로고
    • Intra-and interspecific DNA variation and codon bias of the alcohol dehydrogenase (Adh) locus in Arabis and Arabidopsis species
    • Miyashita, N.T., Kawabe, A., Innan, H., and Terauchi, R. 1998. Intra-and interspecific DNA variation and codon bias of the alcohol dehydrogenase (Adh) locus in Arabis and Arabidopsis species. Mol. Biol. Evol. 15: 1420-1429.
    • (1998) Mol. Biol. Evol. , vol.15 , pp. 1420-1429
    • Miyashita, N.T.1    Kawabe, A.2    Innan, H.3    Terauchi, R.4
  • 22
    • 0344069720 scopus 로고    scopus 로고
    • DNA variation in the wild plant Arabidopsis thaliana revealed by amplified random fragment length polymorphism analysis
    • Miyashita, N.T., Kawabe, A., and Innan, H. 1999. DNA variation in the wild plant Arabidopsis thaliana revealed by amplified random fragment length polymorphism analysis. Genetics 152: 1723-1731.
    • (1999) Genetics , vol.152 , pp. 1723-1731
    • Miyashita, N.T.1    Kawabe, A.2    Innan, H.3
  • 23
    • 0033962299 scopus 로고    scopus 로고
    • Linkage disequilibrium, gene trees and selfing: An ancestral recombination graph with partial self-fertilization
    • Nordborg, M. 2000. Linkage disequilibrium, gene trees and selfing: An ancestral recombination graph with partial self-fertilization. Genetics 154: 923-929.
    • (2000) Genetics , vol.154 , pp. 923-929
    • Nordborg, M.1
  • 24
    • 0036468808 scopus 로고    scopus 로고
    • Linkage diseuqilibrium: What history has to tell us
    • Nordborg, M. and Tavaré, S. 2002. Linkage diseuqilibrium: What history has to tell us. Trends Genet. 18: 83-90.
    • (2002) Trends Genet. , vol.18 , pp. 83-90
    • Nordborg, M.1    Tavaré, S.2
  • 26
    • 0032972599 scopus 로고    scopus 로고
    • DnaSP version 3: An integrated program for molecular population genetics and molecular evolution analysis
    • Rozas, J. and Rozas, R. 1999. DnaSP version 3: An integrated program for molecular population genetics and molecular evolution analysis. Bioinformatics 15: 174-175.
    • (1999) Bioinformatics , vol.15 , pp. 174-175
    • Rozas, J.1    Rozas, R.2
  • 27
    • 0036084355 scopus 로고    scopus 로고
    • MIPS Arabidopsis thaliana Database (MAtDB): An integrated biological knowledge resource based on the first complete plant genome
    • Schoof, H., Zaccaria, P., Gundlach, H., Lemcke, K., Rudd, S., Kolesov, G., Arnold, R., Mewes, H.W., and Mayer, K.F. 2002. MIPS Arabidopsis thaliana Database (MAtDB): An integrated biological knowledge resource based on the first complete plant genome. Nucleic Acids Res. 30: 91-93.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 91-93
    • Schoof, H.1    Zaccaria, P.2    Gundlach, H.3    Lemcke, K.4    Rudd, S.5    Kolesov, G.6    Arnold, R.7    Mewes, H.W.8    Mayer, K.F.9
  • 28
    • 0034522525 scopus 로고    scopus 로고
    • Genetic isolation by distance in Arabidopsis thaliana: Biogeography and postglacial colonization of Europe
    • Sharbel, T., Haubold, B., and Mitchell-Olds, T. 2000. Genetic isolation by distance in Arabidopsis thaliana: Biogeography and postglacial colonization of Europe. Mol. Ecol. 9: 2109-2118.
    • (2000) Mol. Ecol. , vol.9 , pp. 2109-2118
    • Sharbel, T.1    Haubold, B.2    Mitchell-Olds, T.3
  • 29
    • 0034672102 scopus 로고    scopus 로고
    • Genomics-Plant biology in 2010
    • Somerville, C. and Dangl, J. 2000. Genomics-Plant biology in 2010. Science 290: 2077-2078.
    • (2000) Science , vol.290 , pp. 2077-2078
    • Somerville, C.1    Dangl, J.2
  • 30
    • 0033804322 scopus 로고    scopus 로고
    • Combining genome sequences and new technologies for dissecting the genetics of complex phenotypes
    • Steinmetz, L., Mindrinos, M., and Oefner, P. 2000. Combining genome sequences and new technologies for dissecting the genetics of complex phenotypes. Trends Plant Sci. 5: 397-401.
    • (2000) Trends Plant Sci. , vol.5 , pp. 397-401
    • Steinmetz, L.1    Mindrinos, M.2    Oefner, P.3
  • 31
    • 0011261627 scopus 로고    scopus 로고
    • Candidate-gene approaches for studying complex genetic traits: Practical considerations
    • Tabor, H., Risch, N., and Myers, R. 2002. Candidate-gene approaches for studying complex genetic traits: Practical considerations. Nat. Genet. Rev. 3: 1-7.
    • (2002) Nat. Genet. Rev. , vol.3 , pp. 1-7
    • Tabor, H.1    Risch, N.2    Myers, R.3
  • 32
    • 0035739429 scopus 로고    scopus 로고
    • Trimming and clustering sugarcane ESTs
    • Telles, G. and da Silva, F. 2001. Trimming and clustering sugarcane ESTs. Gen. Mol. Biol. 24: 17-23.
    • (2001) Gen. Mol. Biol. , vol.24 , pp. 17-23
    • Telles, G.1    da Silva, F.2


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