The first genetic linkages among expressed regions of the garlic genome

Journal of the American Society for Horticultural Science

Volumn 130, Issue 4, 2005, Pages 569-574

  Zewdie, Yayeh ^a   Havey, Michael J ^b   Prince, James P ^a   Jenderek, Maria M ^c  

^a CALIFORNIA STATE UNIVERSITY   (United States)

^b UNIVERSITY OF WISCONSIN MADISON   (United States)

^c AGRICULTURAL RESEARCH SERVICE   (United States)

Author keywords

Allium sativum; Genetic mapping; Male fertility; RAPD; SNP; SSR

Indexed keywords

ALLIUM SATIVUM;

EID: 21544482562     PISSN: 00031062     EISSN: None     Source Type: Journal    
DOI: 10.21273/jashs.130.4.569     Document Type: Article

References (38)

1. Augusti, K.T. 1990. Therapeutic and medicinal values of onions and garlic, p. 93-108. In: H.D. Rabinowitch and J.L. Brewster (eds.). vol. III. Onions and allied crops: Biochemistry, food science, and minor crops. CRC Press, Boca Raton, Fla.
2. Bhattramakki, D., M. Dolan, M. Hanafey, R. Wineland, D. Vaske, J.C. Register, S.V. Tingay, and A. Rafalski. 2002. Insertion-deletion polymorphism in 3′ regions of maize genes occur frequently and can be used as highly informative genetic markers. Plant Mol. Biol. 48:539-547.
3. Block, E., S. Ahmad, M.K. Jain, R.W. Crecely, R. Apitz-Castro, and M.R. Cruz. 1984. (E, Z)-Ajoene, a potent antithrombotic agent from garlic. J. Amer. Chem. Soc. 106:8295-8296.
4. Clark, A.G. 1990. Inference of haplotypes from PCR-amplified samples of diploid populations. Mol. Biol. Evol. 7:111-122.
5. Etoh, T. 1983. Germination of seeds obtained from a clone of garlic, Allium sativum L. Proc. Jpn. Acad. 59(Ser. B):83-87.
6. Etoh, T. 1986. Fertility of the garlic clones collected in Soviet Central Asia. J. Jpn. Soc. Hort. Sci. 55:312-319.
7. Etoh, T. and C. Hong. 2001. RAPD markers for fertile garlic. Acta Hort. 555:209-212.
8. Etoh, T. and P.W. Simon. 2002. Diversity, fertility and seed production of garlic, p. 101-117. In: H.D. Rabinowitch and L. Currah (eds.). Allium crop science: Recent advances. CABI, New York.
9. Fritsch, R.M. and N. Friesen. 2002. Evolution, domestication and taxonomy, p. 5-30. In: H.D. Rabinowitch and L. Currah (eds.). Allium crop science: Recent advances. CABI, New York.
10. Hu, Z, P. Li, M. Zhou, Z. Zhang, L. Wang, L. Zhu, and Y. Zhu. 2004. Mapping of quantitative loci (QTLs) for rice protein and fat content using doubled haploid lines. Euphytica 135:47-54.
11. International SNP Map Working Group. 2001. A map of human genome sequence variation containing 1.42 million single nucleotide polymorphisms. Nature 409:928-933.
12. Ipek, I., A. Ipek, and P.W. Simon. 2003. Comparison of AFLPs, RAPDs, and isozymes for diversity assessment of garlic and detection of putative duplicates in germplasm collections. J. Amer. Soc. Hort. Sci. 128:246-252.
13. Jenderek. M.M. 1998. Generative reproduction of garlic (Allium sativum L.) (In Polish) [Rozmanazanie generatywne czosnku (Allium sativum L.)]. Zeszyty Naukowe Akademii Rolniczej im. H. Kollataja w Krakowie 57:141-145.
14. 1 families in garlic. Acta Hort. 637:203-206.
15. Jenderek, M.M. and R.M. Hannan. 2004. Variation in reproductive characteristics and seed production in the USDA garlic germplasm collections. HortScience 39:485-488.
16. Kanazin, V., H. Talbert, D. See, P. DeCamp, E. Nevo, and T. Blake. 2002. Discovery and assay of a single-nucleotide polymorphism in barley (Hordeum vulgare). Plant Mol. Biol. 48:529-537.
17. Keusgen, M. 2002. Health and alliums, p. 357-378. In: H.D. Rabinowitch and L. Currah (eds.). Allium crop science: Recent advances. CABI, New York.
18. Kik, C. 2002. Exploitation of wild relatives for the breeding of cultivated Allium species, p. 81-100. In: H.D. Rabinowitch and L. Currah (eds.). Allium crop science: Recent advances. CABI, New York.
19. King, J.J., J. Bradeen, O. Bark, J.A. McCallum, and M.J. Havey. 1998. A low-density genetic map of onion reveals a role for tandem duplication in the evolution of an extremely large diploid genome. Theor. Appl. Genet. 96:52-62.
20. Kosambi, D.D. 1943. The estimation of map distances from recombination values. Ann. Eugenics 12:172-175.
21. Kuhl, J.C., F. Cheung, Q. Yuan, W. Martin, Y. Zewdie, J. McCallum, A. Catanach, P. Rutherford, K.C. Sink, M. Jenderek, J.P. Prince, C.D. Town, and M.J. Havey. 2004. A unique set of 11,008 onion expressed sequence tags reveals expressed sequence and genomic differences between the monocot orders Asparagales and Poales. Plant Cell 16:114-125.
22. Kuhl, J.C., R.E. Hanneman, and M.J. Havey. 2001. Characterization and mapping of Rpi1, a late-blight resistance locus from diploid (1EBN) Mexican Solanum pinnatisectum. Mol. Genet. Genomics 265:977-985.
23. Lampasona, S.G., L. Martinez, and J.L. Burba. 2003. Genetic diversity among selected Argentinean garlic clones (Allium sativum L.) using AFLP (amplified fragment length polymorphism). Euphytica 132:115-119.
24. Lander, E., P. Green, J. Abrahamson, A. Barlow, M. Daley, S. Lincoln, and L. Newburg. 1987. Mapmaker: An interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 1:174-181.
25. Lee, H., E. Eom, Y. Lim, J. Bang, and D. Lee. 2003. Construction of a garlic BAC library and chromosomal assignment of BAC clones using the FISH technique. Genome 46:514-520.
26. rd ed., Cambridge, Mass.
27. Makheja, A.N. and J.M. Bailey. 1990. Antiplatelet constituents of garlic and onion. Agents Actions 29:360-363.
28. Mann, L.K. and T.M. Little. 1957. Growing garlic in California. Univ. of Calif. Veg. Crops Ser. 89:1-10.
29. Ori, D., R.M. Fritsch, and P. Hanelt. 1998. Evolution of genome size in Allium (Alliaceae). Plant Systematics and Evolution 210:57-86.
30. Pooler, M.R. and P.W. Simon. 1994. True seed production in garlic. Sexual Plant Reproduction 7:282-286.
31. Sardesai, N., A. Kumar, K.R. Rajyashri, S. Nair, and M. Mohan. 2002. Identification and mapping of an AFLP marker linked to Gm7, a gall midge resistance gene and its conversion to a SCAR marker for its utility in marker aided selection in rice. Theor. Appl. Genet. 105:691-698.
32. Sawahel, W.A. 2002. Stable genetic transformation of garlic plants using particle bombardment. Cellular Mol. Biol. Lett. 7:49-59.
33. Schneider, K., B. Weisshaar, D.C. Borchardt, and F. Salamini. 2001. SNP frequency and allelic haplotype structure of Beta vulgaris expressed genes. Mol. Breeding 8:63-74.
34. Simon, P.W. 2004. The origin and distribution of garlic: How many garlics are there? 1 Nov. 2004. 〈http://www.ars.usda.gov/Research/ docs.htm?docid=5232〉
35. Simon, P.W. and M.M. Jenderek. 2003. Flowering, seed production, and the genesis of garlic breeding. Plant Breeding Rev. 23:211-244.
36. Thompson, J.D., D.G. Higgins, and T.J. Gibson. 1994. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucl. Acid Res. 22:4673-4680.
37. Volk, G.M., A.D. Henk, and C.M. Richards. 2004. Genetic diversity among U.S. garlic clones as detected using AFLP methods. J. Amer. Soc. Hort. Sci. 129:559-569.
38. Zhang, D., M. Ayele, H. Tefera, and H.T. Nguyen. 2001. RFLP linkage map of the Ethiopian cereal tef (Eragrostis tef (Zucc) Trotter). Theor. Appl. Genet. 102:957-964.