Evaluation of AFLP in Beta

Theoretical and Applied Genetics

Volumn 98, Issue 6-7, 1999, Pages 845-852

  Hansen, M ^a   Kraft, T ^b   Christiansson, M ^a   Nilsson, N O ^a  

^a NOVARTIS PHARMA AG   (Switzerland)

^b LUND UNIVERSITY   (Sweden)

Author keywords

AFLP; Beta; Polymorphism; Reproducibility; Sugarbeet

Indexed keywords

AMPLIFIED FRAGMENT LENGTH POLYMORPHISM; DNA ISOLATION; GENETIC DISTANCE; GENETIC MARKER; PLANT BREEDING;

BETA;

EID: 0033060535     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s001220051143     Document Type: Article

References (38)

1. Becker J, Vos P, Kuiper M, Salamini F, Heun M (1995) Combined mapping of AFLP and RFLP markers in barley. Mol Gen Genet 249:65-73
2. sto in potato. Theor Appl Genet 94:198-203
3. Caetano-Anolles G, Bassam BJ, Gresshoff PM (1991) DNA amplification fingerprinting using very short arbitrary oligonucleotide primers. Bio/Technology 9:553-556
4. Eck HJ van, Rouppe van der Voort J, Draaistra J, van Zandvoort P, van Enckevort E, Segers B, Peleman J, Jacobsen E, Helder J, Bakker J (1995) The inheritance and chromosomal localization of AFLP markers in a non-inbred potato offspring. Mol Breed 1:397-410
5. Ellsworth DL, Rittenhouse KD, Honeycutt RL (1993) Artifactual variation in randomly amplified polymorphic DNA banding patterns. BioTechniques 14:214-217
6. Felsenstein, J (1993) PHYLIP (Phylogeny Inference Package) version 3.5c. Distributed by the author. Department of Genetics, University of Washington, Seattle, Wash.
7. Halldén C, Hansen M, Nilsson NO, Hjerdin A, Säll T (1996) Competition as a source of errors in RAPD analysis. Theor Appl Genet 93:1185-1192
8. Hill M, Witsenboer H, Zabeau M, Vos P, Kesseli R, Michelmore R (1996) PCR-based fingerprinting using AFLPs as a tool for studying genetic relationships in Lactuca spp. Theor Appl Genet 93:1202-1210
9. Hjerdin A, Säll T, Tuvesson S, Halldén C (1994) RFLP markers in the genus Beta: Characterization of DNA sequences from a Beta vulgaris library. Genetica 92:91-99
10. Jones CJ, Edwards KJ, Castaglione S, Winfield MO, Sala F, van de Wiel C, Bredemeijer G, Vosman B, Matthes M, Daly A, Brettschneider R, Bettini P, Buiatti M, Maestri E, Malcevschi A, Marmiroli N, Aert R, Volckaert G, Rueda J, Linacero R, Vazquez A, Karp A (1997) Reproducibility testing of RAPD, AFLP and SSR markers in plants by a network of European laboratories. Mol Breed 3:381-390
11. Jung C, Pillen K, Frese L, Fähr S, Melchinger AE (1993) Phylogenetic relationships between cultivated and wild species of the genus Beta revealed by DNA "fingerprinting". Theor Appl Genet 86:449-457
12. Keim P, Schupp JM, Travis SE, Clayton K, Zhu T, Shi L, Ferreira A, Webb DM (1997) A high-density soybean genetic map based on AFLP markers. Crop Sci 37:537-543
13. Maheswaran M, Subudhi PK, Nandi S, Xu JC, Parco A, Yang DC, Huang N (1997) Polymorphism, distribution and segregation of AFLP markers in a doubled haploid rice population. Theor Appl Genet 94:39-45
14. Matioli SR, de Brito RA (1995) Obtaining genetic markers by using double-stringency PCR with microsatellites and arbitrary primers. BioTechniques 19:752-758
15. Maughan PJ, Saghai Maroof MA, Buss GR, Huestis GM (1996) Amplified fragment length polymorphism (AFLP) in soybean: Species diversity, inheritance, and near-isogenic line analysis. Theor Appl Genet 93:392-401
16. Meksem K, Leister D, Peleman J, Zabeau M, Salamini F, Gebhardt C (1995) A high resolution map of the vicinity of the RI locus on chromosome V of potato based on RFLP and AFLP markers. Mol Gen Genet 249:74-81
17. Nandi S, Subudhi PK, Senadhira D, Manigbas NL, Sen-Mandi S, Huang N (1997) Mapping QTLs for submergence tolerance in rice by AFLP analysis and selective genotyping. Mol Gen Genet 255:1-8
18. Pakniyat H, Powell W, Baird E, Handley LL, Robinson D, Scrimgeour CM, Nevo E, Hackett CA, Caligari PDS, Forster BP (1997) AFLP variation in wild barley (Hordeum vulgare C. Koch) with reference to salt tolerance and associated ecogeography. Genome 40:332-341
19. Penner GA, Bush A, Wise R, Kim W, Domier L, Kasha K, Laroche A, Scoles G, Molnar SJ, Fedak G (1993) Reproducibility of random amplified polymorphic DNA (RAPD) analysis among laboratories. PCR Methods Applic 2:341-345
20. Powell W, Morgante M, Andre C, Hanafey M, Vogel J, Tingey S, Rafalski A (1996) The comparison of RFLP, RAPD, AFLP and SSR (microsatellite) markers for germplasm analysis. Mol Breed 2:225-238
21. Powell W, Thomas WTB, Baird E, Lawrence P, Booth A, Harrower B, McNicol JW, Waugh R (1997) Analysis of quantitative traits in barley by the use of amplified fragment length polymorphisms. Heredity 79:48-59
22. Qi X, Lindhout P (1997) Development of AFLP markers in barley. Mol Gen Genet 254:330-336
23. Rouppe van der Voort JNAM, van Zandvoort P, van Eck HJ, Folkertsma RT, Hutten RCB, Draaistra J, Gommers FJ, Jacobsen E, Helder J, Bakker J (1997) Use of allele specificity of comigrating AFLP markers to align genetic maps from different potato genotypes. Mol Gen Genet 255:438-447
24. Schondelmaier J, Steinrücken G, Jung C (1996) Integration of AFLP markers into a linkge map of sugar beet (Beta vulgaris L.). Plant Breed 115:23-237
25. Sharma SK, Knox MR, Ellis THN (1996) AFLP analysis of the diversity and phylogeny of Lens and its comparison with RAPD analysis. Theor Appl Genet 93:751-758
26. Sánchez de la Hoz MP, Dávila JA, Loarce Y, Ferrer E (1996) Simple sequence repeat primers used in polymerase chain reaction amplifications to study genetic diversity in barley. Genome 39:112-117
27. Simons G, van der Lee T, Diergaarde P, van Daelen R, Groenendijk J, Frijters A, Büschges R, Hollricher K, Töpsch S, Schulze-Lefert P, Salamini F, Zabeau M, Vos P (1997) AFLP-based fine mapping of the Mlo gene to a 30-kb DNA segment of the barley genome. Genomics 44:61-70
28. Tanksley SD, Ganal MW, Martin GB (1995) Chromosome landing: a paradigm in map-based gene cloning in plants with large genomes. Trends Genet 11:63-68
29. Thomas CM, Vos P, Zabeau M, Jones DA, Norcott KA, Chadwick BP, Jones JDG (1995) Identification of amplified restriction fragment polymorphism (AFLP) markers tightly linked to the tomato Cf-9 gene for resistance to Cladiosporum fulvum. Plant J 8:785-794
30. Tohme J, Orlando Gonzalez D, Beebe S, Duque MC (1996) AFLP analysis of gene pools of a wild bean core collection. Crop Sci 36:1375-1384
31. Van Geyt JPC, Lange W, Oleo M, DeBock ThSM (1990) Natural variation within the genus Beta and its possible use for breeding sugar beet: a review. Euphytica 49: 57-76
32. Vos P, Hogers R, Bleeker M, Reijans M, van der Lee T, Homes M, Frijters A, Pot J, Peleman J, Kuiper M, Zabeau M (1995) AFLP: A new technique for DNA fingerprinting. Nucleic Acids Res 23:4407-4414
33. Waugh R, Bonar N, Baird E, Thomas B, Graner A, Hayes P, Powell W (1997) Homology of AFLP products in three mapping populations of barley. Mol Gen Genet 255: 311-321
34. Weeden NF, Timmerman GM, Hemmat M, Kneen BE, Lodhi MA (1992) Inheritance and reliability of RAPD markers. In: Hoisington D, McNab A (eds) Proc Symp Appl RAPD Technol Plant Breed. Crop Sci Soc Am, Minneapolis, pp 12-17
35. Welsh J, McClelland J (1990) Fingerprinting genomes using PCR with arbitrary primers. Nucleic Acids Res 18:7213-7218
36. Williams JGK, Kubelik AR, Livak KJ, Rafalski A, Tingey SV (1990) DNA polymorphisms amplified by arbitary primer are useful as genetic markers. Nucleic Acids Res 18: 6531-6535
37. Zabeau M, Vos P (1993) Selective restriction fragment amplification: a general method for DNA fingerprinting. European Patent Appl 92402629.7
38. Zietkiewicz E, Rafalski A, Labuda D (1994) Genome fingerprinting by simple sequence repeat (SSR)-anchored polymerase chain reaction amplification. Genomics 20:176-183