PCR-Based Methods for Detection of Foodborne Bacterial Pathogens in Dairy Products

Handbook of Dairy Foods Analysis

Volumn , Issue , 2009, Pages 677-687

  Whiting, Ilex ^a   Cook, Nigel ^a   Hernández, Marta ^b   Rodríguez Lázaro, David ^b   D’Agostino, Martin ^a  

^a FOOD AND ENVIRONMENT RESEARCH AGENCY   (United Kingdom)

^b INSTITUTO TECNOLÓGICO AGRARIO DE CASTILLA Y LEÓN   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84888665037     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1201/9781420046328-41     Document Type: Chapter

References (41)

1. Anonymous. (1993). Statistics. Vocabulary and symbols. Part 1: Probability and general statistical terms (ISO 3534-1:1993). International Organization for Standardization, Geneva, Switzerland.
2. Anonymous. (1994). Accuracy (trueness and precision) of measurement and results (ISO 57251:1994). International Organization for Standardization, Geneva, Switzerland.
3. Anonymous. (2003a). Microbiology of food and animal feeding stuffs. Horizontal method for the detection of Salmonella (ISO 6579:2003). International Organization for Standardization, Geneva, Switzerland.
4. Anonymous. (2003b). Microbiology of food and animal feeding stuffs-Protocol for the validation of alternative methods (ISO 16140:2003). International Organization for Standardization, Geneva, Switzerland.
5. Anonymous. (2005a). Microbiology of food and animal feeding stuffs-Polymerase chain reaction (PCR) for the detection of food-borne pathogens-General requirements and definitions (ISO 22174: 2005). International Organization for Standardization, Geneva, Switzerland.
6. Anonymous. (2005b). Microbiology of food and animal feeding stuffs-Polymerase chain reaction (PCR) for the detection of food-borne pathogens-Performance testing for thermal cyclers (ISO/TS 20836). International Organization for Standardization, Geneva, Switzerland.
7. Anonymous. (2006a). Microbiology of food and animal feeding stuffs-Polymerase chain reaction (PCR) for the detection of food-borne pathogens-Requirements for sample preparation for qualitative detection (ISO 20837). International Organization for Standardization, Geneva, Switzerland.
8. Anonymous. (2006b). Microbiology offood and animal feeding stuffs-Polymerase chain reaction (PCR) for the detection of food-borne pathogens-Requirements for amplification and detection for qualitative methods (ISO 20838). International Organization for Standardization., Geneva, Switzerland.
9. Anonymous. (2006c). Milk and milk products - Detection of Enterobacter sakazakii (ISO/TS 22964:2006). International Organization for Standardization, Geneva, Switzerland.
10. Ayele, W.Y., Svastova, P., Roubal, P., Bartos, M., and Pavlik, I. (2005). Mycobacterium avium subspecies paratuberculosis cultured from locally and commercially pasteurized cow's milk in the Czech Republic. Applied and Environmental Microbiology 71, 1210-1214.
11. Bosshard, C., Stephan, R., and Tasara, T. (2006). Application of an F57 sequence-based real-time PCR assay for Mycobacterium paratuberculosis detection in bulk tank raw milk and slaughtered healthy dairy cows. Journal of Food Protection 69, 1662-1667.
12. Cook, N. (2003). The use of NASBA for the detection of microbial pathogens in food and environmental samples. Journal of Microbiological Methods 53, 165-174.
13. D'Agostino, M., Wagner, M., Vazquez-Boland, J.A., Kuchta, T., Karpiskova, R., Hoorfar, J., Novella, S. et al. (2004). A validated PCR-based method to detect Listeria monocytogenes using raw milk as a food model-towards an international standard. Journal of Food Protection 67, 1646-1655.
14. 14. D'Agostino, M. and Rodriguez-Lazaro, D. (2009) Harmonization and validation of methods in food safety - –FOOD-PCR— a case study. In: Global Issues in Food Safety and Technology (G. Barbosa-Canovas et al., Eds.), Academic Press, New York, Chapter 13.
15. Derzelle, S. and Dilasser, F. (2006). A robotic DNA purification protocol and real-time PCR for the detection of Enterobacter sakazakii in powdered infant formulae. BMC Microbiology 6, 100.
16. Hoorfar, J. and Cook, N. (2003). Critical aspects of standardization of PCR. In: Methods in Molecular Biology: PCR Detection of Microbial Pathogens (K. Sachse and J. Frey, Eds.), Humana Press, Totowa, pp. 51-64.
17. Hoorfar, J., Cook, N., Malorny, B., Rädström, P., De Medici, D., Abdulmawjood, A., and Fach, P. (2003). Diagnostic PCR: Making internal amplification control mandatory. Journal of Clinical Microbiology 41, 5835.
18. Hoorfar, J., Malorny, B., Abdulmawjood, A., Cook, N., Wagner, M., and Fach, P. (2004). Practical considerations in design of internal amplification control for diagnostic PCR assays. Journal of Clinical Microbiology 42, 1863-1868.
19. Krascsenicsova, P., Trncikova, T., and Kaclikova, E. (2008). Detection and quantification of Enterobacter sakazakii by real-time 5'-nuclease polymerase chain reaction targeting the palE gene. Food Analytical Methods 1, 85-94.
20. Kumar, S., Balakrishna K., and Batra, H.V. (2006). Detection of Salmonella enterica serovar Typhi (S. Typhi) by selective amplification of invA, viaB, fliC-d and prt genes by polymerase chain reaction in mutiplex format. Letters in Applied Microbiology 42, 149-154.
21. Malorny, B. and Wagner, M. (2005). Detection of Enterobacter sakazakii strains by real-time PCR. Journal of Food Protection 68, 1623-1627.
22. Malorny, B., Hoorfar, J., Hugas, M., Heuvelink, A., Fach, P., Ellerbroek, L., Bunge, C., Dorn, C., and Helmuth, R. (2003a). Interlaboratory diagnostic accuracy of a Salmonella specific PCR-based method. International Journal of Food Microbiology 89, 241-249.
23. Malorny, B., Hoorfar, J., Bunge, C., and Helmuth, R. (2003b). Multicenter validation of the analytical accuracy of Salmonella PCR: Towards an international standard. Applied and Environmental Microbiology 69, 290-296.
24. Malorny, B., Tassios, P.T., Radström, P., Cook, N., Wagner, M., and Hoorfar, J. (2003c). Standardization of diagnostic PCR for the detection of foodborne pathogens. International Journal of Food Microbiology 83, 39-48.
25. Malorny, B., Paccassoni, E., Fach, P., Bunge, C., Martin, A., and Helmuth, R. (2004). Diagnostic real-time PCR for detection of Salmonella in food. Applied and Environmental Microbiology 70, 7046-7052.
26. Malorny, B., Mäde, D., Teufel, P., Berghof-Jäger, C., Huber, I., Anderson, A., and Helmuth, R. (2007). Multicenter validation study of two blockcycler- and one capillary-based real-time PCR methods for the detection of Salmonella in milk powder. International Journal of Food Microbiology 117, 211-218.
27. O' Grady, J., Sedano-Balbas, S., Maher, M., Smith, Y., and Barry, T. (2008). Rapid real-time detection of Listeria monocytogenes in enriched food samples based on the ssrA gene, a novel diagnostic target. Food Microbiology 25, 75-84.
28. Paoletti, C. and Wighardt, F. (2002). Definition of pre-validation performance requirements. In: 4th Meeting of the European Network of GMO Laboratories - ENGL, April 29-30, 2002. Joint Research Centre, Ispra, Italy.
29. Perelle, S., Dilasser, F., Malorny, B., Grout, J., Hoorfar, J., and Fach, P. (2004). Comparison of PCR-ELISA and LightCycler real-time PCR assays for detecting Salmonella spp. in milk and meat samples. Molecular and Cellular Probes 18, 409-420.
30. Rodríguez-Lázaro, D., D'Agostino, M., Herrewegh, A., Pla, M., Cook, N., and Ikonomopoulos, J. (2005). Real-time PCR-based methods for detection of Mycobacterium avium subsp. paratuberculosis in water and milk. International Journal of Food Microbiology 101, 93-94.
31. Rodríguez-Lázaro, D., Hernández, M., D'Agostino, M., and Cook, N. (2006). Application of nucleic acid sequence-based amplification (NASBA) for the detection of viable foodborne pathogens: Progress and challenges. Journal of Rapid Methods and Automation in Microbiology 14, 218-236.
32. Rodríguez-Lázaro, D., Lombard, B., Smith, H., Rzezutka, A., D'Agostino, M., Helmuth, R., Schroeter, A. et al. (2007). Trends in analytical methodology in food safety and quality: Monitoring microorganisms and genetically modified organisms. Trends in Food Science and Technology 18, 306-309.
33. Rossen, L., Noskov, P., Holmstrom, K., and Rasmussen, O.F. (1992). Inhibition of PCR by components of food samples, microbial diagnostic assays and DNA-extraction solution. InternationalJournal of Food Microbiology 17, 37-45.
34. Rossmanith, P., Krassnig, M., Wagner, M., and Hein, I. (2006). Detection of Listeria monocytogenes in food using a combined enrichment/real-time PCR method targeting the prfA gene. Research in Microbiology 157, 763-771.
35. Saiki, R.K., Scharf, S., Faloona, F., Mullis, K.B., Horn, G.T., Erlich, H.A., and Arnheim N. (1985). Enzymatic amplification of beta-globin genomic sequences and restriction site analysis for diagnosis of sickle cell anemia. Science 230, 1350-1354.
36. Saiki, R.K., Gelfand, D.H., Stoffel, S., Scharf, S.J., Higuchi, R., Horn, G.T., Mullis, K.B., and Erlich, H.A. (1988). Primer-directed enzymatic amplification of DNA with a thermostable DNA polimerasa. Science 239, 487-491.
37. Simon, M.C., Gray, D.I., and Cook, N. (1996) DNA extraction and PCR methods for the detection of Listeria monocytogenes in cold-smoked salmon. Applied and Environmental Microbiology 62, 822-824.
38. Skoog, D.A. and Leary, J.J. (1992). Principles of Instrumental Analysis, Saunders College Publishing, London, U.K.
39. Tasara, T. and Stephan, R. (2005). Development of an F57 sequence-based real-time PCR assay for detection of Mycobacterium avium subsp. paratuberculosis in milk. Applied and Environmental Microbiology 71, 5957-5968.
40. Thompson, M., Ellison, S.L.R., and Wood, R. (2002), Harmonised guidelines for single-laboratory validation of methods of analysis (IUAPC Technical Report). Pure and Applied Chemistry 74, 835-855.
41. Anonymous. (1997). Microbiology of food and animal feeding stuffs. Horizontal method for the detection and enumeration of Listeria monocytogenes . Detection method (ISO 11290-1:1997). International Organization for Standardization, Geneva, Switzerland.