-
2
-
-
33745127718
-
Regional and segmental flexibility of antibodies in interaction with antigens of different size
-
Oda, M.; Uchiyama, S.; Robinson, C. V; Fukui, K.; Kobayashi, Y.; Azuma, T. Regional and segmental flexibility of antibodies in interaction with antigens of different size FEBS J. 2006, 273, 1476-1487
-
(2006)
FEBS J.
, vol.273
, pp. 1476-1487
-
-
Oda, M.1
Uchiyama, S.2
Robinson, C.V.3
Fukui, K.4
Kobayashi, Y.5
Azuma, T.6
-
3
-
-
38749103119
-
The immunoglobulin constant region contributes to affinity and specificity
-
Torres, M.; Casadevall, A. The immunoglobulin constant region contributes to affinity and specificity Trends Immunol. 2008, 29, 91-97
-
(2008)
Trends Immunol.
, vol.29
, pp. 91-97
-
-
Torres, M.1
Casadevall, A.2
-
4
-
-
84864518229
-
Isotype modulates epitope specificity, affinity, and antiviral activities of anti-HIV-1 human broadly neutralizing 2F5 antibody
-
Tudor, D.; Yu, H.; Maupetit, J.; Drillet, A.-S.; Bouceba, T.; Schwartz-Cornil, I.; Lopalco, L.; Tuffery, P.; Bomsel, M. Isotype modulates epitope specificity, affinity, and antiviral activities of anti-HIV-1 human broadly neutralizing 2F5 antibody Proc. Natl. Acad. Sci. U.S.A. 2012, 109, 12680-12685
-
(2012)
Proc. Natl. Acad. Sci. U.S.A.
, vol.109
, pp. 12680-12685
-
-
Tudor, D.1
Yu, H.2
Maupetit, J.3
Drillet, A.-S.4
Bouceba, T.5
Schwartz-Cornil, I.6
Lopalco, L.7
Tuffery, P.8
Bomsel, M.9
-
5
-
-
0034728685
-
Memory in the B-cell compartment: Antibody affinity maturation
-
Neuberger, M. S.; Ehrenstein, M. R.; Rada, C.; Sale, J.; Batista, F. D.; Williams, G.; Milstein, C. Memory in the B-cell compartment: antibody affinity maturation Philos. Trans. R. Soc., B 2000, 355, 357-360
-
(2000)
Philos. Trans. R. Soc., B
, vol.355
, pp. 357-360
-
-
Neuberger, M.S.1
Ehrenstein, M.R.2
Rada, C.3
Sale, J.4
Batista, F.D.5
Williams, G.6
Milstein, C.7
-
6
-
-
0030821164
-
Structural insights into the evolution of an antibody combining site
-
Wedemayer, G. J.; Patten, P. A.; Wang, L. H.; Schultz, P. G.; Stevens, R. C. Structural insights into the evolution of an antibody combining site Science 1997, 276, 1665-1669
-
(1997)
Science
, vol.276
, pp. 1665-1669
-
-
Wedemayer, G.J.1
Patten, P.A.2
Wang, L.H.3
Schultz, P.G.4
Stevens, R.C.5
-
7
-
-
0033199096
-
Junctional amino acids determine the maturation pathway of an antibody
-
Furukawa, K.; Akasako-Furukawa, A.; Shirai, H.; Nakamura, H.; Azuma, T. Junctional amino acids determine the maturation pathway of an antibody Immunity 1999, 11, 329-338
-
(1999)
Immunity
, vol.11
, pp. 329-338
-
-
Furukawa, K.1
Akasako-Furukawa, A.2
Shirai, H.3
Nakamura, H.4
Azuma, T.5
-
8
-
-
84872585073
-
Investigating allostery in molecular recognition: Insights from a computational study of multiple antibody-antigen complexes
-
Corrada, D.; Morra, G.; Colombo, G. Investigating allostery in molecular recognition: Insights from a computational study of multiple antibody-antigen complexes J. Phys. Chem. B 2013, 117, 535-552
-
(2013)
J. Phys. Chem. B
, vol.117
, pp. 535-552
-
-
Corrada, D.1
Morra, G.2
Colombo, G.3
-
9
-
-
84858311200
-
Identification of domains in protein structures from the analysis of intramolecular interactions
-
Genoni, A.; Morra, G.; Colombo, G. Identification of domains in protein structures from the analysis of intramolecular interactions J. Phys. Chem. B 2012, 116, 3331-3343
-
(2012)
J. Phys. Chem. B
, vol.116
, pp. 3331-3343
-
-
Genoni, A.1
Morra, G.2
Colombo, G.3
-
10
-
-
46449087936
-
Relationship between energy distribution and fold stability: Insights from molecular dynamics simulations of native and mutant proteins
-
Morra, G.; Colombo, G. Relationship between energy distribution and fold stability: Insights from molecular dynamics simulations of native and mutant proteins Proteins 2008, 72, 660-672
-
(2008)
Proteins
, vol.72
, pp. 660-672
-
-
Morra, G.1
Colombo, G.2
-
11
-
-
63549104682
-
Modeling signal propagation mechanisms and ligand-based conformational dynamics of the Hsp90 molecular chaperone full-length dimer
-
Morra, G.; Verkhivker, G.; Colombo, G. Modeling signal propagation mechanisms and ligand-based conformational dynamics of the Hsp90 molecular chaperone full-length dimer PLoS Comput. Biol. 2009, 5, e1000323
-
(2009)
PLoS Comput. Biol.
, vol.5
, pp. 1000323
-
-
Morra, G.1
Verkhivker, G.2
Colombo, G.3
-
12
-
-
33748974586
-
Similar folds with different stabilization mechanisms: The cases of prion and doppel proteins
-
Colacino, S.; Tiana, G.; Colombo, G. Similar folds with different stabilization mechanisms: The cases of prion and doppel proteins BMC Struct. Biol. 2006, 6, 17
-
(2006)
BMC Struct. Biol.
, vol.6
, pp. 17
-
-
Colacino, S.1
Tiana, G.2
Colombo, G.3
-
13
-
-
79955608918
-
HMGB1-carbenoxolone interactions: Dynamics insights from combined nuclear magnetic resonance and molecular dynamics
-
Mollica, L.; Morra, G.; Colombo, G.; Musco, G. HMGB1-carbenoxolone interactions: dynamics insights from combined nuclear magnetic resonance and molecular dynamics Chem. Asian J. 2011, 6, 1171-1180
-
(2011)
Chem. Asian J.
, vol.6
, pp. 1171-1180
-
-
Mollica, L.1
Morra, G.2
Colombo, G.3
Musco, G.4
-
14
-
-
78549243769
-
Investigating dynamic and energetic determinants of protein nucleic acid recognition: Analysis of the zinc finger zif268-DNA complexes
-
Torella, R.; Moroni, E.; Caselle, M.; Morra, G.; Colombo, G. Investigating dynamic and energetic determinants of protein nucleic acid recognition: analysis of the zinc finger zif268-DNA complexes BMC Struct. Biol. 2010, 10, 42
-
(2010)
BMC Struct. Biol.
, vol.10
, pp. 42
-
-
Torella, R.1
Moroni, E.2
Caselle, M.3
Morra, G.4
Colombo, G.5
-
15
-
-
84861005184
-
Corresponding functional dynamics across the Hsp90 chaperone family: Insights from a multiscale analysis of MD simulations
-
Morra, G.; Potestio, R.; Micheletti, C.; Colombo, G. Corresponding functional dynamics across the Hsp90 chaperone family: Insights from a multiscale analysis of MD simulations PLoS Comput. Biol. 2012, 8, e1002433
-
(2012)
PLoS Comput. Biol.
, vol.8
, pp. 1002433
-
-
Morra, G.1
Potestio, R.2
Micheletti, C.3
Colombo, G.4
-
16
-
-
26444556851
-
Determinants of protein stability and folding: Comparative analysis of beta-lactoglobulins and liver basic fatty acid binding protein
-
Ragona, L.; Colombo, G.; Catalano, M.; Molinari, H. Determinants of protein stability and folding: Comparative analysis of beta-lactoglobulins and liver basic fatty acid binding protein Proteins 2005, 61, 366-376
-
(2005)
Proteins
, vol.61
, pp. 366-376
-
-
Ragona, L.1
Colombo, G.2
Catalano, M.3
Molinari, H.4
-
17
-
-
0033527584
-
Selection and analysis of an optimized anti-VEGF antibody: Crystal structure of an affinity-matured Fab in complex with antigen
-
Chen, Y.; Wiesmann, C.; Fuh, G.; Li, B.; Christinger, H. W.; McKay, P.; De Vos, A. M.; Lowman, H. B. Selection and analysis of an optimized anti-VEGF antibody: Crystal structure of an affinity-matured Fab in complex with antigen J. Mol. Biol. 1999, 293, 865-881
-
(1999)
J. Mol. Biol.
, vol.293
, pp. 865-881
-
-
Chen, Y.1
Wiesmann, C.2
Fuh, G.3
Li, B.4
Christinger, H.W.5
McKay, P.6
De Vos, A.M.7
Lowman, H.B.8
-
18
-
-
0032530717
-
VEGF and the Fab fragment of a humanized neutralizing antibody: Crystal structure of the complex at 2.4 A resolution and mutational analysis of the interface
-
Muller, Y. A.; Chen, Y.; Christinger, H. W.; Li, B.; Cunningham, B. C.; Lowman, H. B.; De Vos, A. M. VEGF and the Fab fragment of a humanized neutralizing antibody: crystal structure of the complex at 2.4 A resolution and mutational analysis of the interface Structure 1998, 6, 1153-1167
-
(1998)
Structure
, vol.6
, pp. 1153-1167
-
-
Muller, Y.A.1
Chen, Y.2
Christinger, H.W.3
Li, B.4
Cunningham, B.C.5
Lowman, H.B.6
De Vos, A.M.7
-
19
-
-
2442621619
-
Discovery and development of bevacizumab, an anti-VEGF antibody for treating cancer
-
Ferrara, N.; Hillan, K. J.; Gerber, H.-P.; Novotny, W. Discovery and development of bevacizumab, an anti-VEGF antibody for treating cancer Nat. Rev. Drug Discovery 2004, 3, 391-400
-
(2004)
Nat. Rev. Drug Discovery
, vol.3
, pp. 391-400
-
-
Ferrara, N.1
Hillan, K.J.2
Gerber, H.-P.3
Novotny, W.4
-
20
-
-
0024384470
-
Pituitary follicular cells secrete a novel heparin-binding growth factor specific for vascular endothelial cells
-
Ferrara, N.; Henzel, W. J. Pituitary follicular cells secrete a novel heparin-binding growth factor specific for vascular endothelial cells Biochem. Biophys. Res. Commun. 1989, 161, 851-858
-
(1989)
Biochem. Biophys. Res. Commun.
, vol.161
, pp. 851-858
-
-
Ferrara, N.1
Henzel, W.J.2
-
21
-
-
4143136640
-
Vascular endothelial growth factor: Basic science and clinical progress
-
Ferrara, N. Vascular endothelial growth factor: Basic science and clinical progress Endocr. Rev. 2004, 25, 581-611
-
(2004)
Endocr. Rev.
, vol.25
, pp. 581-611
-
-
Ferrara, N.1
-
22
-
-
33745738260
-
Vascular endothelial growth factor (VEGF) as a target of bevacizumab in cancer: From the biology to the clinic
-
Ranieri, G.; Patruno, R.; Ruggieri, E.; Montemurro, S.; Valerio, P.; Ribatti, D. Vascular endothelial growth factor (VEGF) as a target of bevacizumab in cancer: From the biology to the clinic Curr. Med. Chem. 2006, 13, 1845-1857
-
(2006)
Curr. Med. Chem.
, vol.13
, pp. 1845-1857
-
-
Ranieri, G.1
Patruno, R.2
Ruggieri, E.3
Montemurro, S.4
Valerio, P.5
Ribatti, D.6
-
23
-
-
0030782410
-
Crystal structure at 1.7 A resolution of VEGF in complex with domain 2 of the Flt-1 receptor
-
Wiesmann, C.; Fuh, G.; Christinger, H. W.; Eigenbrot, C.; Wells, J. A.; De Vos, A. M. Crystal structure at 1.7 A resolution of VEGF in complex with domain 2 of the Flt-1 receptor Cell 1997, 91, 695-704
-
(1997)
Cell
, vol.91
, pp. 695-704
-
-
Wiesmann, C.1
Fuh, G.2
Christinger, H.W.3
Eigenbrot, C.4
Wells, J.A.5
De Vos, A.M.6
-
24
-
-
0033810049
-
Modeling of loops in protein structures
-
Fiser, A.; Do, R. K.; Sali, A. Modeling of loops in protein structures Protein Sci. 2000, 9, 1753-1773
-
(2000)
Protein Sci.
, vol.9
, pp. 1753-1773
-
-
Fiser, A.1
Do, R.K.2
Sali, A.3
-
25
-
-
79955574923
-
-
version 1.3r1; Schrödinger LLC: New York.
-
The PyMOL Molecular Graphics System, version 1.3r1; Schrödinger LLC: New York, 2010.
-
(2010)
The PyMOL Molecular Graphics System
-
-
-
26
-
-
46249092554
-
GROMACS 4: Algorithms for highly efficient, load-balanced, and scalable molecular simulation
-
Hess, B.; Kutzner, C.; Van der Spoel, D.; Lindahl, E. GROMACS 4: Algorithms for highly efficient, load-balanced, and scalable molecular simulation J. Chem. Theory Comput. 2008, 4, 435-447
-
(2008)
J. Chem. Theory Comput.
, vol.4
, pp. 435-447
-
-
Hess, B.1
Kutzner, C.2
Van Der Spoel, D.3
Lindahl, E.4
-
27
-
-
0008819754
-
The GROMOS Biomolecular Simulation program package
-
Scott, W. R. P.; Hünenberger, P. H.; Tironi, I. G.; Mark, A. E.; Billeter, S. R.; Fennen, J.; Torda, A. E.; Huber, T.; Krüger, P.; Van Gunsteren, W. F. The GROMOS Biomolecular Simulation program package J. Phys. Chem. A 1999, 103, 3596-3607
-
(1999)
J. Phys. Chem. A
, vol.103
, pp. 3596-3607
-
-
Scott, W.R.P.1
Hünenberger, P.H.2
Tironi, I.G.3
Mark, A.E.4
Billeter, S.R.5
Fennen, J.6
Torda, A.E.7
Huber, T.8
Krüger, P.9
Van Gunsteren, W.F.10
-
29
-
-
0023453329
-
Silhouettes: A graphical aid to the interpretation and validation of cluster analysis
-
Rousseeuw, P. J. Silhouettes: A graphical aid to the interpretation and validation of cluster analysis J. Comput. Appl. Math. 1987, 20, 53-65
-
(1987)
J. Comput. Appl. Math.
, vol.20
, pp. 53-65
-
-
Rousseeuw, P.J.1
-
31
-
-
84866167816
-
MMPBSA. Py: An efficient program for end-state free energy calculations
-
Miller, B. R.; McGee, T. D.; Swails, J. M.; Homeyer, N.; Gohlke, H.; Roitberg, A. E. MMPBSA.py: An efficient program for end-state free energy calculations J. Chem. Theory Comput. 2012, 8, 3314-3321
-
(2012)
J. Chem. Theory Comput.
, vol.8
, pp. 3314-3321
-
-
Miller, B.R.1
McGee, T.D.2
Swails, J.M.3
Homeyer, N.4
Gohlke, H.5
Roitberg, A.E.6
-
32
-
-
0030856731
-
Humanization of an anti-vascular endothelial growth factor monoclonal antibody for the therapy of solid tumors and other disorders
-
Presta, L. G.; Chen, H.; O'Connor, S. J.; Chisholm, V.; Meng, Y. G.; Krummen, L.; Winkler, M.; Ferrara, N. Humanization of an anti-vascular endothelial growth factor monoclonal antibody for the therapy of solid tumors and other disorders Cancer Res. 1997, 57, 4593-4599
-
(1997)
Cancer Res.
, vol.57
, pp. 4593-4599
-
-
Presta, L.G.1
Chen, H.2
O'Connor, S.J.3
Chisholm, V.4
Meng, Y.G.5
Krummen, L.6
Winkler, M.7
Ferrara, N.8
-
33
-
-
0347994883
-
Understanding the determinants of stability and folding of small globular proteins from their energetics
-
Tiana, G.; Simona, F.; De Mori, G. M. S.; Broglia, R. A.; Colombo, G. Understanding the determinants of stability and folding of small globular proteins from their energetics Protein Sci. 2004, 13, 113-124
-
(2004)
Protein Sci.
, vol.13
, pp. 113-124
-
-
Tiana, G.1
Simona, F.2
De Mori, G.M.S.3
Broglia, R.A.4
Colombo, G.5
-
34
-
-
0001351515
-
Estimation of absolute and relative entropies of macromolecules using the covariance matrix
-
Schlitter, J. Estimation of absolute and relative entropies of macromolecules using the covariance matrix J. Chem. Phys. Lett. 1993, 215, 617-621
-
(1993)
J. Chem. Phys. Lett.
, vol.215
, pp. 617-621
-
-
Schlitter, J.1
-
35
-
-
33847615623
-
Mice expressing a humanized form of VEGF-A may provide insights into the safety and efficacy of anti-VEGF antibodies
-
Gerber, H.-P.; Wu, X.; Yu, L.; Wiesmann, C.; Liang, X. H.; Lee, C. V; Fuh, G.; Olsson, C.; Damico, L.; Xie, D.; Meng, Y. G.; Gutierrez, J.; Corpuz, R.; Li, B.; Hall, L.; Rangell, L.; Ferrando, R.; Lowman, H.; Peale, F.; Ferrara, N. Mice expressing a humanized form of VEGF-A may provide insights into the safety and efficacy of anti-VEGF antibodies Proc. Natl. Acad. Sci. U.S.A. 2007, 104, 3478-3483
-
(2007)
Proc. Natl. Acad. Sci. U.S.A.
, vol.104
, pp. 3478-3483
-
-
Gerber, H.-P.1
Wu, X.2
Yu, L.3
Wiesmann, C.4
Liang, X.H.5
Lee, C.V.6
Fuh, G.7
Olsson, C.8
Damico, L.9
Xie, D.10
Meng, Y.G.11
Gutierrez, J.12
Corpuz, R.13
Li, B.14
Hall, L.15
Rangell, L.16
Ferrando, R.17
Lowman, H.18
Peale, F.19
Ferrara, N.20
more..
-
36
-
-
34250318189
-
The immunoglobulin heavy chain constant region affects kinetic and thermodynamic parameters of antibody variable region interactions with antigen
-
Torres, M.; Fernández-Fuentes, N.; Fiser, A.; Casadevall, A. The immunoglobulin heavy chain constant region affects kinetic and thermodynamic parameters of antibody variable region interactions with antigen J. Biol. Chem. 2007, 282, 13917-13927
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 13917-13927
-
-
Torres, M.1
Fernández-Fuentes, N.2
Fiser, A.3
Casadevall, A.4
-
37
-
-
0029826981
-
Can immunoglobulin C(H)1 constant region domain modulate antigen binding affinity of antibodies?
-
Pritsch, O.; Hudry-Clergeon, G.; Buckle, M.; Petillot, Y.; Bouvet, J. P.; Gagnon, J.; Dighiero, G. Can immunoglobulin C(H)1 constant region domain modulate antigen binding affinity of antibodies? J. Clin. Invest. 1996, 98, 2235-2243
-
(1996)
J. Clin. Invest.
, vol.98
, pp. 2235-2243
-
-
Pritsch, O.1
Hudry-Clergeon, G.2
Buckle, M.3
Petillot, Y.4
Bouvet, J.P.5
Gagnon, J.6
Dighiero, G.7
-
38
-
-
77950995010
-
How antibodies fold
-
Feige, M. J.; Hendershot, L. M.; Buchner, J. How antibodies fold Trends Biochem. Sci. 2010, 35, 189-198
-
(2010)
Trends Biochem. Sci.
, vol.35
, pp. 189-198
-
-
Feige, M.J.1
Hendershot, L.M.2
Buchner, J.3
-
39
-
-
84870579518
-
Entropy-enthalpy transduction caused by conformational shifts can obscure the forces driving protein-ligand binding
-
Fenley, A. T.; Muddana, H. S.; Gilson, M. K. Entropy-enthalpy transduction caused by conformational shifts can obscure the forces driving protein-ligand binding Proc. Natl. Acad. Sci. U.S.A. 2012, 109, 20006-20011
-
(2012)
Proc. Natl. Acad. Sci. U.S.A.
, vol.109
, pp. 20006-20011
-
-
Fenley, A.T.1
Muddana, H.S.2
Gilson, M.K.3
-
40
-
-
34248597377
-
Enthalpy-entropy compensation in the transition of a monospecific antibody towards antigen-binding promiscuity
-
Kang, J.; Warren, A. S. Enthalpy-entropy compensation in the transition of a monospecific antibody towards antigen-binding promiscuity Mol. Immunol. 2007, 44, 3623-3624
-
(2007)
Mol. Immunol.
, vol.44
, pp. 3623-3624
-
-
Kang, J.1
Warren, A.S.2
-
41
-
-
84864540090
-
Protein dynamics and the diversity of an antibody response
-
Adhikary, R.; Yu, W.; Oda, M.; Zimmermann, J.; Romesberg, F. E. Protein dynamics and the diversity of an antibody response J. Biol. Chem. 2012, 287, 27139-27147
-
(2012)
J. Biol. Chem.
, vol.287
, pp. 27139-27147
-
-
Adhikary, R.1
Yu, W.2
Oda, M.3
Zimmermann, J.4
Romesberg, F.E.5
-
42
-
-
66449119429
-
An unfolded CH1 domain controls the assembly and secretion of IgG antibodies
-
Feige, M. J.; Groscurth, S.; Marcinowski, M.; Shimizu, Y.; Kessler, H.; Hendershot, L. M.; Buchner, J. An unfolded CH1 domain controls the assembly and secretion of IgG antibodies Mol. Cell 2009, 34, 569-579
-
(2009)
Mol. Cell
, vol.34
, pp. 569-579
-
-
Feige, M.J.1
Groscurth, S.2
Marcinowski, M.3
Shimizu, Y.4
Kessler, H.5
Hendershot, L.M.6
Buchner, J.7
-
43
-
-
33845541204
-
The indirect generation of long-distance structural changes in antibodies upon their binding to antigen
-
Piekarska, B.; Drozd, A.; Konieczny, L.; Król, M.; Jurkowski, W.; Roterman, I.; Spólnik, P.; Stopa, B.; Rybarska, J. The indirect generation of long-distance structural changes in antibodies upon their binding to antigen Chem. Biol. Drug Des. 2006, 68, 276-283
-
(2006)
Chem. Biol. Drug Des.
, vol.68
, pp. 276-283
-
-
Piekarska, B.1
Drozd, A.2
Konieczny, L.3
Król, M.4
Jurkowski, W.5
Roterman, I.6
Spólnik, P.7
Stopa, B.8
Rybarska, J.9
-
44
-
-
17844408143
-
Analysis of correlated domain motions in IgG light chain reveals possible mechanisms of immunological signal transduction
-
Król, M.; Roterman, I.; Piekarska, B.; Konieczny, L.; Rybarska, J.; Stopa, B.; Spólnik, P. Analysis of correlated domain motions in IgG light chain reveals possible mechanisms of immunological signal transduction Proteins 2005, 59, 545-554
-
(2005)
Proteins
, vol.59
, pp. 545-554
-
-
Król, M.1
Roterman, I.2
Piekarska, B.3
Konieczny, L.4
Rybarska, J.5
Stopa, B.6
Spólnik, P.7
-
45
-
-
46849122649
-
Exploring the energy landscape of antibody-antigen complexes: Protein dynamics, flexibility, and molecular recognition
-
Thielges, M. C.; Zimmermann, J.; Yu, W.; Oda, M.; Romesberg, F. E. Exploring the energy landscape of antibody-antigen complexes: protein dynamics, flexibility, and molecular recognition Biochemistry 2008, 47, 7237-7247
-
(2008)
Biochemistry
, vol.47
, pp. 7237-7247
-
-
Thielges, M.C.1
Zimmermann, J.2
Yu, W.3
Oda, M.4
Romesberg, F.E.5
-
46
-
-
34547460183
-
Molecular evolution of affinity and flexibility in the immune system
-
Thorpe, I. F.; Brooks, C. L. Molecular evolution of affinity and flexibility in the immune system Proc. Natl. Acad. Sci. U.S.A. 2007, 104, 8821-8826
-
(2007)
Proc. Natl. Acad. Sci. U.S.A.
, vol.104
, pp. 8821-8826
-
-
Thorpe, I.F.1
Brooks, C.L.2
-
47
-
-
0027986872
-
Role of the domain-domain interaction in the construction of the antigen combining site. A comparative study by 1H-15N shift correlation NMR spectroscopy of the Fv and Fab fragments of anti-dansyl mouse monoclonal antibody
-
Takahashi, H.; Tamura, H.; Shimba, N.; Shimada, I.; Arata, Y. Role of the domain-domain interaction in the construction of the antigen combining site. A comparative study by 1H-15N shift correlation NMR spectroscopy of the Fv and Fab fragments of anti-dansyl mouse monoclonal antibody J. Mol. Biol. 1994, 243, 494-503
-
(1994)
J. Mol. Biol.
, vol.243
, pp. 494-503
-
-
Takahashi, H.1
Tamura, H.2
Shimba, N.3
Shimada, I.4
Arata, Y.5
-
48
-
-
0031215027
-
Reduction in the amide hydrogen exchange rates of an anti-lysozyme Fv fragment due to formation of the Fv-Lysozyme complex
-
Williams, D. C.; Rule, G. S.; Poljak, R. J.; Benjamin, D. C. Reduction in the amide hydrogen exchange rates of an anti-lysozyme Fv fragment due to formation of the Fv-Lysozyme complex J. Mol. Biol. 1997, 270, 751-762
-
(1997)
J. Mol. Biol.
, vol.270
, pp. 751-762
-
-
Williams, D.C.1
Rule, G.S.2
Poljak, R.J.3
Benjamin, D.C.4
-
49
-
-
0030006070
-
Clonal selection and learning in the antibody system
-
Rajewsky, K. Clonal selection and learning in the antibody system Nature 1996, 381, 751-758
-
(1996)
Nature
, vol.381
, pp. 751-758
-
-
Rajewsky, K.1
-
50
-
-
84866146945
-
Routine access to millisecond time scale events with accelerated molecular dynamics
-
Pierce, L. C. T.; Salomon-Ferrer, R.; de Oliveira, C. A. F.; McCammon, J. A.; Walker, R. C. Routine access to millisecond time scale events with accelerated molecular dynamics J. Chem. Theory Comput. 2012, 8, 2997-3002
-
(2012)
J. Chem. Theory Comput.
, vol.8
, pp. 2997-3002
-
-
Pierce, L.C.T.1
Salomon-Ferrer, R.2
De Oliveira, C.A.F.3
McCammon, J.A.4
Walker, R.C.5
-
51
-
-
84876214497
-
Funnel metadynamics as accurate binding free-energy method
-
Limongelli, V.; Bonomi, M.; Parrinello, M. Funnel metadynamics as accurate binding free-energy method Proc. Natl. Acad. Sci. U.S.A. 2013, 110, 6358-6363
-
(2013)
Proc. Natl. Acad. Sci. U.S.A.
, vol.110
, pp. 6358-6363
-
-
Limongelli, V.1
Bonomi, M.2
Parrinello, M.3
-
52
-
-
33748797691
-
Antibody evolution constrains conformational heterogeneity by tailoring protein dynamics
-
Zimmermann, J.; Oakman, E. L.; Thorpe, I. F.; Shi, X.; Abbyad, P.; Brooks, C. L.; Boxer, S. G.; Romesberg, F. E. Antibody evolution constrains conformational heterogeneity by tailoring protein dynamics Proc. Natl. Acad. Sci. U. S. A. 2006, 103, 13722-13727
-
(2006)
Proc. Natl. Acad. Sci. U. S. A.
, vol.103
, pp. 13722-13727
-
-
Zimmermann, J.1
Oakman, E.L.2
Thorpe, I.F.3
Shi, X.4
Abbyad, P.5
Brooks, C.L.6
Boxer, S.G.7
Romesberg, F.E.8
-
53
-
-
84859888767
-
DEER distance measurements on proteins
-
Jeschke, G. DEER distance measurements on proteins Annu. Rev. Phys. Chem. 2012, 63, 419-446
-
(2012)
Annu. Rev. Phys. Chem.
, vol.63
, pp. 419-446
-
-
Jeschke, G.1
-
54
-
-
67749111952
-
Design of therapeutic proteins with enhanced stability
-
Chennamsetty, N.; Voynov, V.; Kayser, V.; Helk, B.; Trout, B. L. Design of therapeutic proteins with enhanced stability Proc. Natl. Acad. Sci. U.S.A. 2009, 106, 11937-11942
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 11937-11942
-
-
Chennamsetty, N.1
Voynov, V.2
Kayser, V.3
Helk, B.4
Trout, B.L.5
-
55
-
-
35148855712
-
Computational design of antibody-affinity improvement beyond in vivo maturation
-
Lippow, S. M.; Wittrup, K. D.; Tidor, B. Computational design of antibody-affinity improvement beyond in vivo maturation Nat. Biotechnol. 2007, 25, 1171-1176
-
(2007)
Nat. Biotechnol.
, vol.25
, pp. 1171-1176
-
-
Lippow, S.M.1
Wittrup, K.D.2
Tidor, B.3
-
56
-
-
84876862822
-
Redesign of a cross-reactive antibody to dengue virus with broad-spectrum activity and increased in vivo potency
-
Tharakaraman, K.; Robinson, L. N.; Hatas, A.; Chen, Y.-L.; Siyue, L.; Raguram, S.; Sasisekharan, V.; Wogan, G. N.; Sasisekharan, R. Redesign of a cross-reactive antibody to dengue virus with broad-spectrum activity and increased in vivo potency Proc. Natl. Acad. Sci. U.S.A. 2013, 110, E1555-E1564
-
(2013)
Proc. Natl. Acad. Sci. U.S.A.
, vol.110
-
-
Tharakaraman, K.1
Robinson, L.N.2
Hatas, A.3
Chen, Y.-L.4
Siyue, L.5
Raguram, S.6
Sasisekharan, V.7
Wogan, G.N.8
Sasisekharan, R.9
-
57
-
-
48049124972
-
Analysis and improvements to Kabat and structurally correct numbering of antibody variable domains
-
Abhinandan, K. R.; Martin, A. C. R. Analysis and improvements to Kabat and structurally correct numbering of antibody variable domains Mol. Immunol. 2008, 45, 3832-3839
-
(2008)
Mol. Immunol.
, vol.45
, pp. 3832-3839
-
-
Abhinandan, K.R.1
Martin, A.C.R.2
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