-
1
-
-
77957960073
-
The targets of CAPRI Rounds 13-19
-
Janin J. The targets of CAPRI Rounds 13-19. Proteins 2010;78:3067-3072.
-
(2010)
Proteins
, vol.78
, pp. 3067-3072
-
-
Janin, J.1
-
2
-
-
84888236012
-
-
Assessment of CAPRI Rounds 20-27. Proteins 2013, this issue.
-
Lensink M, Wodak SJ. Assessment of CAPRI Rounds 20-27. Proteins 2013, this issue.
-
-
-
Lensink, M.1
Wodak, S.J.2
-
3
-
-
80051719282
-
Mechanism of activation of methyltransferases involved in translation by the Trm112 'hub' protein
-
Liger D, Mora L, Lazar N, Figaro S, Henri J, Scrima N, Buckingham RH, van Tilbeurgh H, Heurgué-Hamard V, Graille M. Mechanism of activation of methyltransferases involved in translation by the Trm112 'hub' protein. Nucleic Acids Res 2011;39:6249-6259.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 6249-6259
-
-
Liger, D.1
Mora, L.2
Lazar, N.3
Figaro, S.4
Henri, J.5
Scrima, N.6
Buckingham, R.H.7
van Tilbeurgh, H.8
Heurgué-Hamard, V.9
Graille, M.10
-
4
-
-
84875215005
-
Structural basis of bacterial defense against g-type lysozyme-based innate immunity
-
Leysen S, Vanderkelen L, Weeks SD, Michiels CW, Strelkov SV. Structural basis of bacterial defense against g-type lysozyme-based innate immunity. Cell Mol Life Sci 2013;70:1113-1122.
-
(2013)
Cell Mol Life Sci
, vol.70
, pp. 1113-1122
-
-
Leysen, S.1
Vanderkelen, L.2
Weeks, S.D.3
Michiels, C.W.4
Strelkov, S.V.5
-
5
-
-
84888253974
-
-
Structure of a diiron hydroxylase ferredoxin electron transfer complex, in preparation.
-
Acheson JF, Bailey LJ, Fox BG. Structure of a diiron hydroxylase ferredoxin electron transfer complex, in preparation.
-
-
-
Acheson, J.F.1
Bailey, L.J.2
Fox, B.G.3
-
6
-
-
58049215418
-
Structural consequences of effector protein complex formation in a diiron hydroxylase
-
Bailey LJ, McCoy JG, Phillips GN, Jr, Fox BG. Structural consequences of effector protein complex formation in a diiron hydroxylase. Proc Natl Acad Sci USA. 2008;105:19194-19198.
-
(2008)
Proc Natl Acad Sci USA.
, vol.105
, pp. 19194-19198
-
-
Bailey, L.J.1
McCoy, J.G.2
Phillips Jr, G.N.3
Fox, B.G.4
-
7
-
-
84888242163
-
-
The penta-modular cellulosomal arabinoxylanase CtXy15A structure as revealed by X-ray crystallography.
-
Bras JLA, Gilbert HJ, Ferreira LMA, Fontes CMGA. The penta-modular cellulosomal arabinoxylanase CtXy15A structure as revealed by X-ray crystallography.
-
-
-
Bras, J.L.A.1
Gilbert, H.J.2
Ferreira, L.M.A.3
Fontes, C.M.G.A.4
-
8
-
-
84888235789
-
-
Structure of Bt4661, a Suse-like surface located polysaccharide binding protein from the Bacteroides thetaiotaomicron heparin utilisation locus, in preparation.
-
Lowe EC, Basle A, Czjzek M, Thomas S, Murray H, Firbank SJ, Bolam DN. Structure of Bt4661, a Suse-like surface located polysaccharide binding protein from the Bacteroides thetaiotaomicron heparin utilisation locus, in preparation.
-
-
-
Lowe, E.C.1
Basle, A.2
Czjzek, M.3
Thomas, S.4
Murray, H.5
Firbank, S.J.6
Bolam, D.N.7
-
9
-
-
7544226311
-
PRODRG: a tool for high-throughput crystallography of protein-ligand complexes
-
Schüttelkopf AW, van Aalten DMF. PRODRG: a tool for high-throughput crystallography of protein-ligand complexes. Acta Crystallogr 2004;D60:1355-1363.
-
(2004)
Acta Crystallogr
, vol.60 D
, pp. 1355-1363
-
-
Schüttelkopf, A.W.1
van Aalten, D.M.F.2
-
10
-
-
84857636869
-
Structure of the ultra-high-affinity colicin E2 DNase-Im2 complex J
-
Wojdyla JA, Fleishman SJ, Baker D, Kleanthous C. Structure of the ultra-high-affinity colicin E2 DNase-Im2 complex J. Mol. Biol 2012;417:79-94.
-
(2012)
Mol. Biol
, vol.417
, pp. 79-94
-
-
Wojdyla, J.A.1
Fleishman, S.J.2
Baker, D.3
Kleanthous, C.4
-
11
-
-
84888231233
-
-
M, Blind prediction of interfacial water positions in CAPRI. Proteins, in press.
-
Lensink MF, Moal IH, Bates PA, Kastritis PL, Melquiond ASJ, Karaca E, Schmitz C, van Dijk M, Bonvin AMJJ, Eisenstein M, Jiménez-García B, Grosdidier S, Solernou A, Pérez-Cano L, Pallara C, Fernández-Recio J, Xu J, Muthu P, Kilambi KP, Gray JJ, Grudinin S, Derevyanko G, Mitchell JC, Wieting J, Kanamori E, Tsuchiya Y, Murakami Y, Sarmiento J, Standley DM, Shirota M, Kinoshita K, Nakamura H, Chavent M, Ritchie DW, Park H, Ko J, Lee H, Seok C, Shen Y, Kozakov D, Vajda S, Kundrotas PJ, Vakser IA, Pierce BG, Hwang H, Vreven T, Weng Z, Buch I, Farkash E, Wolfson HJ, Zacharias M, Qin S, Zhou HX, Huang SY, Zou X, Wojdyla JA, Kleanthous C, Wodak SJ. Blind prediction of interfacial water positions in CAPRI. Proteins, in press.
-
-
-
Lensink, M.F.1
Moal, I.H.2
Bates, P.A.3
Kastritis, P.L.4
Melquiond, A.S.J.5
Karaca, E.6
Schmitz, C.7
van, D.8
Bonvin, A.M.J.J.9
Eisenstein, M.10
Jiménez-García, B.11
Grosdidier, S.12
Solernou, A.13
Pérez-Cano, L.14
Pallara, C.15
Fernández-Recio, J.16
Xu, J.17
Muthu, P.18
Kilambi, K.P.19
Gray, J.J.20
Grudinin, S.21
Derevyanko, G.22
Mitchell, J.C.23
Wieting, J.24
Kanamori, E.25
Tsuchiya, Y.26
Murakami, Y.27
Sarmiento, J.28
Standley, D.M.29
Shirota, M.30
Kinoshita, K.31
Nakamura, H.32
Chavent, M.33
Ritchie, D.W.34
Park, H.35
Ko, J.36
Lee, H.37
Seok, C.38
Shen, Y.39
Kozakov, D.40
Vajda, S.41
Kundrotas, P.J.42
Vakser, I.A.43
Pierce, B.G.44
Hwang, H.45
Vreven, T.46
Weng, Z.47
Buch, I.48
Farkash, E.49
Wolfson, H.J.50
Zacharias, M.51
Qin, S.52
Zhou, H.X.53
Huang, S.Y.54
Zou, X.55
Wojdyla, J.A.56
Kleanthous, C.57
Wodak, S.J.58
more..
-
12
-
-
77953593958
-
Self-association of TPR-domains: natural and engineered
-
Krachler AM, Sharma A, Kleanthous C. Self-association of TPR-domains: natural and engineered. Proteins 2010;78:2131-2143.
-
(2010)
Proteins
, vol.78
, pp. 2131-2143
-
-
Krachler, A.M.1
Sharma, A.2
Kleanthous, C.3
-
13
-
-
78349304669
-
Design, production and molecular structure of a new family of artificial alpha-helicoidal repeat proteins (αRep) based on thermostable HEAT-like repeats
-
Urvoas A, Guellouz A, Valerio-Lepiniec M, Graille M, Durand D, Desravines DC, van Tilbeurgh H, Desmadril M, Minard P. Design, production and molecular structure of a new family of artificial alpha-helicoidal repeat proteins (αRep) based on thermostable HEAT-like repeats. J Mol Biol 2010;404:307-327.
-
(2010)
J Mol Biol
, vol.404
, pp. 307-327
-
-
Urvoas, A.1
Guellouz, A.2
Valerio-Lepiniec, M.3
Graille, M.4
Durand, D.5
Desravines, D.C.6
van Tilbeurgh, H.7
Desmadril, M.8
Minard, P.9
-
14
-
-
84883158675
-
-
Selection of specific protein binders for pre-defined targets from an optimized library of artificial helicoidal repeat proteins (alphaRep) PLOS One, doi:10.1371/journal.pone.0071512.
-
Guellouz A, Valerio-Lepiniec M, Urvoas A, Chevrel A, Graille M, Fourati-Kammoun Z, Desmadril M, van Tilbeurgh H, Minard P. Selection of specific protein binders for pre-defined targets from an optimized library of artificial helicoidal repeat proteins (alphaRep) PLOS One, doi:10.1371/journal.pone.0071512.
-
-
-
Guellouz, A.1
Valerio-Lepiniec, M.2
Urvoas, A.3
Chevrel, A.4
Graille, M.5
Fourati-Kammoun, Z.6
Desmadril, M.7
van Tilbeurgh, H.8
Minard, P.9
-
15
-
-
79956017135
-
Computational design of proteins targeting the conserved stem region of influenza hemagglutinin
-
Fleishman SJ, Whitehead TA, Ekiert DC, Dreyfus C, Corn JE, Strauch EM, Wilson IA, Baker D. Computational design of proteins targeting the conserved stem region of influenza hemagglutinin. Science 2011;332:816-821.
-
(2011)
Science
, vol.332
, pp. 816-821
-
-
Fleishman, S.J.1
Whitehead, T.A.2
Ekiert, D.C.3
Dreyfus, C.4
Corn, J.E.5
Strauch, E.M.6
Wilson, I.A.7
Baker, D.8
-
16
-
-
79954633234
-
A de novo protein binding pair by computational design and directed evolution
-
Karanicolas J, Corn JE, Chen I, Joachimiak LA, Dym O, Peck SH, Albeck S, Unger T, Hu W, Liu G, Delbecq S, Montelione GT, Spiegel CP, Liu DR, Baker D. A de novo protein binding pair by computational design and directed evolution. Mol Cell 2011;42:250-260.
-
(2011)
Mol Cell
, vol.42
, pp. 250-260
-
-
Karanicolas, J.1
Corn, J.E.2
Chen, I.3
Joachimiak, L.A.4
Dym, O.5
Peck, S.H.6
Albeck, S.7
Unger, T.8
Hu, W.9
Liu, G.10
Delbecq, S.11
Montelione, G.T.12
Spiegel, C.P.13
Liu, D.R.14
Baker, D.15
-
17
-
-
57349132441
-
Protein-protein docking benchmark version 3.0
-
Hwang H, Pierce B, Mintseris J, Janin J, Weng Z. Protein-protein docking benchmark version 3.0. Proteins 2008;73:705-709.
-
(2008)
Proteins
, vol.73
, pp. 705-709
-
-
Hwang, H.1
Pierce, B.2
Mintseris, J.3
Janin, J.4
Weng, Z.5
-
18
-
-
79952177781
-
A structure-based benchmark for protein-protein binding affinity
-
Kastritis PL, Moal IH, Hwang H, Weng Z, Bates PA, Bonvin AM, Janin J. A structure-based benchmark for protein-protein binding affinity. Protein Sci 2011;20:482-491.
-
(2011)
Protein Sci
, vol.20
, pp. 482-491
-
-
Kastritis, P.L.1
Moal, I.H.2
Hwang, H.3
Weng, Z.4
Bates, P.A.5
Bonvin, A.M.6
Janin, J.7
-
19
-
-
80054899738
-
Community-wide assessment of protein-interface modeling suggests improvements to design methodology
-
Fernandez-
-
Moretti R, Fleishman SJ, Agius R, Torchala M, Bates PA, Kastritis PL, Rodrigues JP, Trellet M, Bonvin AM, Cui M, Rooman M, Gillis D, Dehouck Y, Moal I, Romero-Durana M, Perez-Cano L, Pallara C, Jimenez B, Fernandez-Recio J, Flores S, Pacella M, Kilambi KP, Gray JJ, Popov P, Grudinin S, Esquivel-Rodríguez J, Kihara D, Zhao N, Korkin D, Zhu X, Demerdash ON, Mitchell JC, Kanamori E, Tsuchiya Y, Nakamura H, Lee H, Park H, Seok C, Sarmiento J, Liang S, Teraguchi S, Standley DM, Shimoyama H, Terashi G, Takeda-Shitaka M, Iwadate M, Umeyama H, Beglov D, Hall DR, Kozakov D, Vajda S, Pierce BG, Hwang H, Vreven T, Weng Z, Huang Y, Li H, Yang X, Ji X, Liu S, Xiao Y, Zacharias M, Qin S, Zhou HX, Huang SY, Zou X, Velankar S, Janin J, Wodak SJ, Baker D. Community-wide assessment of protein-interface modeling suggests improvements to design methodology. J Mol Biol 2011;414:289-302.
-
(2011)
J Mol Biol
, vol.414
, pp. 289-302
-
-
Moretti, R.1
Fleishman, S.J.2
Agius, R.3
Torchala, M.4
Bates, P.A.5
Kastritis, P.L.6
Rodrigues, J.P.7
Trellet, M.8
Bonvin, A.M.9
Cui, M.10
Rooman, M.11
Gillis, D.12
Dehouck, Y.13
Moal, I.14
Romero-Durana, M.15
Perez-Cano, L.16
Pallara, C.17
Jimenez, B.18
Recio, J.19
Flores, S.20
Pacella, M.21
Kilambi, K.P.22
Gray, J.J.23
Popov, P.24
Grudinin, S.25
Esquivel-Rodríguez, J.26
Kihara, D.27
Zhao, N.28
Korkin, D.29
Zhu, X.30
Demerdash, O.N.31
Mitchell, J.C.32
Kanamori, E.33
Tsuchiya, Y.34
Nakamura, H.35
Lee, H.36
Park, H.37
Seok, C.38
Sarmiento, J.39
Liang, S.40
Teraguchi, S.41
Standley, D.M.42
Shimoyama, H.43
Terashi, G.44
Takeda-Shitaka, M.45
Iwadate, M.46
Umeyama, H.47
Beglov, D.48
Hall, D.R.49
Kozakov, D.50
Vajda, S.51
Pierce, B.G.52
Hwang, H.53
Vreven, T.54
Weng, Z.55
Huang, Y.56
Li, H.57
Yang, X.58
Ji, X.59
Liu, S.60
Xiao, Y.61
Zacharias, M.62
Qin, S.63
Zhou, H.X.64
Huang, S.Y.65
Zou, X.66
Velankar, S.67
Janin, J.68
Wodak, S.J.69
Baker, D.70
more..
-
20
-
-
77952068704
-
Are scoring functions in protein-protein docking ready to predict interactomes? Clues from a novel binding affinity benchmark
-
Erratum in: J Proteome Res 2011;10:921-922.
-
Kastritis PL, Bonvin AM. Are scoring functions in protein-protein docking ready to predict interactomes? Clues from a novel binding affinity benchmark. J Proteome Res 2010;7:2216-2225; Erratum in: J Proteome Res 2011;10:921-922.
-
(2010)
J Proteome Res
, vol.7
, pp. 2216-2225
-
-
Kastritis, P.L.1
Bonvin, A.M.2
-
21
-
-
84862025262
-
Optimization of affinity, specificity and function of designed influenza inhibitors using deep sequencing
-
Whitehead TA, Chevalier A, Song Y, Dreyfus C, Fleishman SJ, De Mattos C, Myers CA, Kamisetty H, Blair P, Wilson IA, Baker D. Optimization of affinity, specificity and function of designed influenza inhibitors using deep sequencing. Nat Biotechnol 2012;30:543-548.
-
(2012)
Nat Biotechnol
, vol.30
, pp. 543-548
-
-
Whitehead, T.A.1
Chevalier, A.2
Song, Y.3
Dreyfus, C.4
Fleishman, S.J.5
De Mattos, C.6
Myers, C.A.7
Kamisetty, H.8
Blair, P.9
Wilson, I.A.10
Baker, D.11
-
22
-
-
84885836021
-
Community-wide evaluation of methods for predicting the effect of mutations on protein-protein Interactions
-
Takeda-, doi:10.1002/prot.24356.
-
Moretti R, Fleishman SJ, Agius R, Torchala M, Bates PA, Kastritis PL, Rodrigues JPGLM, Trellet M, Bonvin AMJJ, Cui M, Rooman M, Gillis D, Dehouck Y, Moal I, Romero-Durana M, Perez-Cano L, Pallara C, Jimenez B, Fernandez-Recio J, Flores S, Pacella M, Kilambi KP, Gray JJ, Popov P, Grudinin S, Esquivel-Rodríguez J, Kihara D, Zhao N, Korkin D, Zhu X, Demerdash ONA, Mitchell JC, Kanamori E, Tsuchiya Y, Nakamura H, Lee H, Park H, Seok C, Sarmiento J, Liang S, Teraguchi S, Standley DM, Shimoyama H, Terashi G, Takeda-Shitaka M, Iwadate M, Umeyama H, Beglov D, Hall DR, Kozakov D, Vajda S, Pierce BG, Hwang H, Vreven T, Weng Z, Huang Y, Li H, Yang X, Ji X, Liu S, Xiao Y, Zacharias M, Qin S, Zhou HX, Huang SY, Zou X, Velankar S, Janin J, Wodak SJ, Baker D. Community-wide evaluation of methods for predicting the effect of mutations on protein-protein Interactions. Proteins, doi:10.1002/prot.24356.
-
Proteins
-
-
Moretti, R.1
Fleishman, S.J.2
Agius, R.3
Torchala, M.4
Bates, P.A.5
Kastritis, P.L.6
Rodrigues, J.P.G.L.M.7
Trellet, M.8
Bonvin, A.M.J.J.9
Cui, M.10
Rooman, M.11
Gillis, D.12
Dehouck, Y.13
Moal, I.14
Romero-Durana, M.15
Perez-Cano, L.16
Pallara, C.17
Jimenez, B.18
Fernandez-Recio, J.19
Flores, S.20
Pacella, M.21
Kilambi, K.P.22
Gray, J.J.23
Popov, P.24
Grudinin, S.25
Esquivel-Rodríguez, J.26
Kihara, D.27
Zhao, N.28
Korkin, D.29
Zhu, X.30
Demerdash, O.N.A.31
Mitchell, J.C.32
Kanamori, E.33
Tsuchiya, Y.34
Nakamura, H.35
Lee, H.36
Park, H.37
Seok, C.38
Sarmiento, J.39
Liang, S.40
Teraguchi, S.41
Standley, D.M.42
Shimoyama, H.43
Terashi, G.44
Shitaka, M.45
Iwadate, M.46
Umeyama, H.47
Beglov, D.48
Hall, D.R.49
Kozakov, D.50
Vajda, S.51
Pierce, B.G.52
Hwang, H.53
Vreven, T.54
Weng, Z.55
Huang, Y.56
Li, H.57
Yang, X.58
Ji, X.59
Liu, S.60
Xiao, Y.61
Zacharias, M.62
Qin, S.63
Zhou, H.X.64
Huang, S.Y.65
Zou, X.66
Velankar, S.67
Janin, J.68
Wodak, S.J.69
Baker, D.70
more..
-
23
-
-
80054685109
-
Critical Assessment of methods of protein structure prediction (CASP)-Round IX
-
Moult J, Fidelis K, Kryshtafovich A, Tramontano A. Critical Assessment of methods of protein structure prediction (CASP)-Round IX. Proteins 2011;79(Suppl 10):1-5.
-
(2011)
Proteins
, vol.79
, Issue.SUPPL 10
, pp. 1-5
-
-
Moult, J.1
Fidelis, K.2
Kryshtafovich, A.3
Tramontano, A.4
|