Identification of cadmium-induced Agaricus blazei genes through suppression subtractive hybridization

Food and Chemical Toxicology

Volumn 63, Issue , 2014, Pages 84-90

  Wang, Liling ^a   Li, Haibo ^a   Wei, Hailong ^a   Wu, Xueqian ^a,b   Ke, Leqin ^c  

^a ZHEJIANG FORESTRY ACADEMY   (China)

^b INSTITUTE OF MATERIA MEDICA   (China)

^c LISHUI UNIVERSITY   (China)

Author keywords

Agaricus blazei; Cadmium; Edible mushroom; Gene expression; Suppression subtractive hybridization

Indexed keywords

CADMIUM; COMPLEMENTARY DNA;

AGARICUS BLAZEI; AMINO ACID SEQUENCE; ARTICLE; BINDING AFFINITY; CELL RESCUE; CELL TRANSPORT; CELLULAR, SUBCELLULAR AND MOLECULAR BIOLOGICAL PHENOMENA AND FUNCTIONS; CONTROLLED STUDY; DNA HYBRIDIZATION; DNA LIBRARY; ENVIRONMENTAL EXPOSURE; FUNGAL GENE; GENE IDENTIFICATION; GENETIC PROCEDURES; MIRROR ORIENTATION SELECTION; MOLECULAR CLONING; NONHUMAN; NORTHERN BLOTTING; NUCLEOTIDE SEQUENCE; PROTEIN ANALYSIS; PROTEIN DEFENSE; PROTEIN FATE; PROTEIN FUNCTION; PROTEIN TRANSCRIPTION; PROTEIN VIRULENCE; QUANTITATIVE ANALYSIS; REAL TIME POLYMERASE CHAIN REACTION; SUPPRESSION SUBTRACTIVE HYBRIDIZATION; UPREGULATION;

AGARICUS BLAZEI; BASIDIOMYCOTA; FUNGI;

AGARICUS BLAZEI; CADMIUM; EDIBLE MUSHROOM; GENE EXPRESSION; SUPPRESSION SUBTRACTIVE HYBRIDIZATION;

AGARICUS; BASE SEQUENCE; CADMIUM; DNA PRIMERS; GENE EXPRESSION REGULATION, FUNGAL; GENES, FUNGAL; NUCLEIC ACID HYBRIDIZATION; POLYMERASE CHAIN REACTION; UP-REGULATION;

EID: 84888082047     PISSN: 02786915     EISSN: 18736351     Source Type: Journal    
DOI: 10.1016/j.fct.2013.10.036     Document Type: Article

References (55)

1. Apte M., Girme G., Bankar A., Ravikumar A., Zinjarde S. 3, 4-Dihydroxy-l-phenylalanine-derived melanin from Yarrowia lipolytica mediates the synthesis of silver and gold nanostructures. J. Nanobiotechnol. 2013, 11(1):2.
2. Basha P.S., Rani A.U. Cadmium-induced antioxidant defense mechanism in freshwater teleost Oreochromis mossambicus (Tilapia). Ecotoxicol. Environ. Saf. 2003, 56(2):218-221.
3. Biedron R., Tangen J.M., Maresz K., Hetland G. Agaricus blazei Murill - immunomodulatory properties and health benefits. Funct Foods Health Dis 2012, 2(11):428-447.
4. Bok J.W., Keller N.P. LaeA, a regulator of secondary metabolism in Aspergillus spp. Eukaryot. Cell. 2004, 3:527-535.
5. Casanova F., Honda R.T., Ferreira-Nozawa M.S., Rocha Aride P.H., Nozawa S.R. Effects of copper and cadmium exposure on mRNA expression of catalase, glutamine synthetase, cytochrome p450 and heat shock protein 70 in tambaqui fish (Colossoma macropomum). Gene Express. Genet. Genom. 2013, 6:1-8.
6. Clarke S., Banfield K. S-adenosyl-l-methionine-dependent methyltransferases. Homocysteine in Health and Disease 2001, 63-78. Cambridge University Press, London. R. Carmel, D.W. Jacobsen (Eds.).
7. Cui Y., McBride S.J., Boyd W.A., Alper S., Freedman J.H. Toxicogenomic analysis of Caenorhabditis elegans reveals novel genes and pathways involved in the resistance to cadmium toxicity. Genome Biol. 2007, 8:R122.
8. Diatchenko L., Lau Y.F., Campbell A.P., Chenchik A., Moqadam F., Huang B., Lukyanov S., Lukyanov K., Gurskaya N., Sverdlov E.D., Siebert P.D. Suppression subtractive hybridization: a method for generating differentially regulated or tissue-specific cDNA probes and libraries. Proc. Natl. Acad. Sci. USA 1996, 93(12):6025-6030.
9. Eisenman H.C., Casadevall A. Synthesis and assembly of fungal melanin. Appl. Microbiol. Biotechnol. 2012, 93:931-940.
10. Elbekai R.H., El-Kadi A.O.S. Arsenite and cadmium, but not chromium, induce NAD(P)H: quinone oxidoreductase 1 through transcriptional mechanisms, in spite of post-transcriptional modifications. Toxicol. In Vitro 2008, 22:1184-1190.
11. El-kereamy A., Bi Y.M., Ranathunge K., Beatty P.H., Good A.G., Rothstein S.J. The rice R2R3-MYB transcription factor OsMYB55 is involved in the tolerance to high temperature and modulates amino acid metabolism. PLoS ONE 2012, 7(12):e52030. 10.1371/journal.pone.0052030.
12. Firenzuoli F., Gori L., Lombardo G. The medicinal mushroom Agaricus blazei Murrill: review of literature and pharmaco-toxicological problems. Evid. Based Complem. Altern. Med. 2008, 5(1):3-15.
13. Gentsch M., Barth G. Carbon source dependent phosphorylation of the Gpr1 protein in the yeast Yarrowia lipolytica. FEMS Yeast Res. 2005, 5:909-917.
14. Greiner M., Kreutzer B., Jung V., Grobholz R., Hasenfus A., Stöhr R.F., Tornillo L., Dudek J., Stöckle M., Unteregger G., Kamradt J., Wullich B., Zimmermann R. Silencing of the Sec62 gene inhibits migratory and invasive potential of various tumor cells. Int. J. Cancer 2011, 128:2284-2295.
15. Grudkowska M., Zagdańska B. Multifunctional role of plant cysteine proteinases. Acta Biochim. Pol. 2004, 51(3):609-624.
16. Hlavica P. Evaluation of structural features in fungal cytochromes P450 predicted to rule catalytic diversification. Biochim. Biophys. Acta 2012, 1834(1):205-220.
17. Hossain M.A., Piyatida P., Teixeira da Silva J.A., Fujita M. Molecular mechanism of heavy metal toxicity and tolerance in plants: central role of glutathione in detoxification of reactive oxygen species and methylglyoxal and in heavy metal chelation. J. Bot. 2012, 10.1155/2012/872875.
18. Inoue H., Nojima H., Okayama H. High efficiency transformation of Escherichia coli with plasmids. Gene 1990, 96:23-28.
19. Jakobsson P.J., Morgenstern R., Mancini J., Ford-Hutchinson A., Persson B. Common structural features of MAPEG-a widespread superfamily of membrane associated proteins with highly divergent functions in eicosanoid and glutathione metabolism. Protein Sci. 1999, 8(3):689-692.
20. Kalač P. Trace element contents in European species of wild growing edible mushrooms: a review for the period 2000-2009. Food Chem. 2010, 122:2-15.
21. Kovalchuk I., Titov V., Hohn B., Kovalchuk O. Transcriptome profiling reveals similarities and differences in plant responses to cadmium and lead. Mutat. Res. 2005, 570(2):149-161.
22. Kreuzinger N., Podeu R., Gruber F., Göbl F., Kubicek C.P. Identification of some ectomycorrhizal basidiomycetes by PCR amplification of their gpd (glyceraldehyde-3-phosphate dehydrogenase) genes. Appl. Environ. Microbiol. 1996, 62(9):3432-3438.
23. Li W.Z., Song L.M., Li Y.P., Lu X.P., Luo H.M., Dai C.E., Fang Y.Q., Dong H.T., Li D.B. Expressed sequence tag analysis and cDNA array establishment of Nicotiana tabacum: application to salinity stress. Chin. J. Agr. Biotechnol. 2009, 6(1):81-89.
24. Li H., Peng H., Wang L., Wei H., Li N., Jin Q. Identification of fungal genes involved in the preinfection events between ectomycorrhizal association (Pisolithus tinctorius and Pinus massoniana). Mycol. Prog. 2013, 10.1007/s11557-013-0899-1.
25. Liu W., Sun L., Zhong M., Zhou Q., Gong Z., Li P., Tai P., Li X. Cadmium-induced DNA damage and mutations in Arabidopsis plantlet shoots identified by DNA fingerprinting. Chemosphere 2012, 89:1048-1055.
26. Lu Z., Wang H. Effects of cadmium and lead on ADH gene expression. Acta Sci. Circum. 1998, 18(5):500-503.
27. Marrs K.A., Walbot V. Expression and RNA splicing of the maize glutathione S-transferase bronze2 gene is regulated by cadmium and other stresses. Plant Physiol. 1997, 113:93-102.
28. Minglin L., Yuxiu Z., Tuanyao C. Identification of genes up-regulated in response to Cd exposure in Brassica juncea L. Gene. 2005, 363:151-158.
29. Mowen K.A. Arginine methylation of STAT1 modulates IFN alpha/beta-induced transcription. Cell 2001, 104:731-741.
30. Park J., Lee S., Choi J., Ahn K., Park B., Park J., Kang S., Lee Y.H. Fungal cytochrome P450 database. BMC Genom. 2008, 9:402. 10.1186/1471-2164-9-402.
31. Pereira Y., Lagniel G., Godat E., Baudouin-Cornu P., Junot C., Labarre J. Chromate causes sulfur starvation in yeast. Toxicol. Sci. 2008, 106(2):400-412.
32. Ray W.J., Roscelli G.A. A kinetic study of the phosphoglucomutase pathway. J. Biol. Chem. 1964, 239:1228-1236.
33. Rebrikov D.V., Britanova O.V., Gurskaya N.G., Lukyanov K.A., Tarabykin V.S., Lukyanov S.A. Mirror orientation selection (MOS): a method for eliminating false positive clones from libraries generated by suppression subtractive hybridization. Nucleic Acids Res. 2000, 28:E90.
34. Reid M.F., Fewson C.A. Molecular characterization of microbial alcohol dehydrogenases. Crit. Rev. Microbiol. 1994, 20:13-56.
35. Robellet X., Flipphi M., Pégot S., Maccabe A.P., Vélot C. AcpA, a member of the GPR1/FUN34/YaaH membrane protein family, is essential for acetate permease activity in the hyphal fungus Aspergillus nidulans. Biochem. J. 2008, 412:485-493.
36. Roxas V.P., Smith R.K., Allen E.R., Allen R.D. Overexpression of glutathione S-transferase/glutathione peroxidase enhances the growth of transgenic tobacco seedlings during stress. Nat. Biotechnol. 1997, 15:988-991.
37. Sato K., Sato M., Nakano A. Rer1p, a retrieval receptor for endoplasmic reticulum membrane proteins, is dynamically localized to the golgi apparatus by coatomer. J. Cell Biol. 2001, 152(5):935-944.
38. Sato K., Sato M., Nakano A. Rer1p, a retrieval receptor for ER membrane proteins, recognizes transmembrane domains in multiple modes. Mol. Biol. Cell 2003, 14:3605-3616.
39. Sidhu M., Sharma M., Bhatia M., Awasthi Y.C., Nath R. Effect of chronic cadmium exposure on glutathione S-transferase and glutathione peroxidase activities in Rhesus monkey: the role of selenium. Toxicology. 1993, 83:203-213.
40. Singh A., Pandey A., Pandey G.K. Phospholipase D in stress activated lipid signaling in plants. Plant Stress. 2012, 6:10-17.
41. Smida A., Valderrama X.P., Agostini M.C., Furlan M.A., Chedrese J. Cadmium stimulates transcription of the cytochrome p450 side chain cleavage gene in genetically modified stable porcine granulosa cells. Biol. Reprod. 2004, 70(1):25-31.
42. Spiazzi C.C., Manfredini V., Barcellos da Silva F.E., Flores E.M., Izaguirry A.P., Vargas L.M., Soares M.B., Santos F.W. Γ-Oryzanol protects against acute cadmium-induced oxidative damage in mice testes. Food Chem. Toxicol. 2013, 55:526-532.
43. Stoehr C.G., Nolte E., Wach S., Wieland W.F., Hofstaedter F., Hartmann A., Stoehr R. NAD(P)H: quinone oxidoreductase 1 (NQO1) P187S polymorphism and prostate cancer risk in caucasians. Int. J. Mol. Sci. 2012, 13(9):10959-10969.
44. Sun L., Liu G., Yang M., Zhuang Y. Bioaccessibility of cadmium in fresh and cooked Agaricus blazei Murill assessed by in vitro biomimetic digestion system. Food Chem. Toxicol. 2012, 50:1729-1733.
45. Takiguchi M., Achanzar W.E., Qu W., Li G., Waalkes M.P. Effects of cadmium on DNA-(Cytosine-5) methyltransferase activity and DNA methylation status during cadmium-induced cellular transformation. Exp. Cell Res. 2003, 286(2):355-365.
46. Tanguy A., Boutet I., Boudry P., Degremont L., Laroche J., Moraga D. Molecular identification and expression of the phosphoglucomutase (PGM) gene from the Pacific oyster Crassostrea gigas. Gene 2006, 382:20-27.
47. Tsigos I., Martinou A., Kafetzopoulos D., Bouriotis V. Chitin deacetylases: new, versatile tools in biotechnology. Trends Biotechnol. 2000, 18:305-312.
48. Usui M., Tanaka S., Miyasaka H., Suzuki Y., Shioi Y. Characterization of cysteine protease induced by oxidative stress in cells of Chlamydomonas sp. strain W80. Physiol. Plant. 2007, 131:519-526.
49. Wan Ngah W.S., Teong L.C., Hanafiah M.A.K.M. Adsorption of dyes and heavy metal ions by chitosan composites: a review. Carbohydr. Polym. 2010, 83:1446-1456.
50. Weidenhammer E.M., Singh M., Ruiz-Noriega M., Woolford J.L. The PRP31 gene encodes a novel protein required for pre-mRNA splicing in Saccharomyces cerevisiae. Nucleic Acids Res. 1996, 24(6):1164-1170.
51. Wysocki R., Tamás M.J. How Saccharomyces cerevisiae copes with toxic metals and metalloids. FEMS Microbiol. Rev. 2010, 34(6):925-951.
52. 2-induced cell death in Arabidopsis. Plant Cell 2003, 15:2285-2295.
53. Zhang M., Liu X., Yuan L., Wu K., Duan J., Wang X., Yang L. Transcriptional profiling in cadmium-treated rice seedling roots using suppressive subtractive hybridization. Plant Physiol. Biochem. 2011, 50:79-86.
54. Zhao Y., Park R.D., Muzzarelli R.A.A. Chitin deacetylases: properties and applications. Mar. Drugs 2010, 8:24-46.
55. Zhu H., Kranz R.G. A nitrogen-regulated glutamine amidotransferase (GAT1_2.1) represses shoot branching in Arabidopsis. Plant Physiol. 2012, 160:1770-1780.