메뉴 건너뛰기




Volumn 50, Issue , 2012, Pages 79-86

Transcriptional profiling in cadmium-treated rice seedling roots using suppressive subtractive hybridization

Author keywords

Cadmium phytotoxicity; Rice roots; Suppressive subtractive hybridization (SSH); Transcriptome

Indexed keywords

CADMIUM; COMPLEMENTARY DNA; HEAVY METAL; MEMBRANE PROTEIN; TRANSCRIPTOME; VEGETABLE PROTEIN;

EID: 81555197131     PISSN: 09819428     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.plaphy.2011.07.015     Document Type: Article
Times cited : (47)

References (55)
  • 1
    • 3242774357 scopus 로고    scopus 로고
    • Hazards of heavy metal contamination
    • Järup L. Hazards of heavy metal contamination. Br. Med. Bull. 2003, 68:167-182.
    • (2003) Br. Med. Bull. , vol.68 , pp. 167-182
    • Järup, L.1
  • 2
    • 33644931378 scopus 로고    scopus 로고
    • The significance of amino acids and amino acid-derived molecules in plant responses and adaptation to heavy metal stress
    • Sharma S.S., Dietz K.J. The significance of amino acids and amino acid-derived molecules in plant responses and adaptation to heavy metal stress. J. Exp. Bot. 2006, 57:711-726.
    • (2006) J. Exp. Bot. , vol.57 , pp. 711-726
    • Sharma, S.S.1    Dietz, K.J.2
  • 3
    • 21444458180 scopus 로고    scopus 로고
    • Heavy metal signalling in plants: linking cellular and oganismic responses
    • H. Hirt, K. Shinozaki (Eds.)
    • Polle A., Schützendübel A. Heavy metal signalling in plants: linking cellular and oganismic responses. Plant Responses to Abiotic Stress 2003, 4:187-215. H. Hirt, K. Shinozaki (Eds.).
    • (2003) Plant Responses to Abiotic Stress , vol.4 , pp. 187-215
    • Polle, A.1    Schützendübel, A.2
  • 4
    • 28044450663 scopus 로고    scopus 로고
    • Identification of genes up-regulated in response to Cd exposure in Brassica juncea L
    • Lang M., Zhang Y., Chai T. Identification of genes up-regulated in response to Cd exposure in Brassica juncea L. Gene 2005, 363:151-158.
    • (2005) Gene , vol.363 , pp. 151-158
    • Lang, M.1    Zhang, Y.2    Chai, T.3
  • 5
    • 0034035039 scopus 로고    scopus 로고
    • Strategies of heavy metal uptake by three plant species growing near a metal smelter
    • Dahmani-Muller H., van Oort F., Gélie B., Balabane M. Strategies of heavy metal uptake by three plant species growing near a metal smelter. Environ. Pollut. 2000, 109:231-238.
    • (2000) Environ. Pollut. , vol.109 , pp. 231-238
    • Dahmani-Muller, H.1    van Oort, F.2    Gélie, B.3    Balabane, M.4
  • 6
    • 11444261022 scopus 로고    scopus 로고
    • Genotypic variation of the response to cadmium toxicity in Pisum sativum L
    • Metwally A., Safronova V.I., Belimov A.A., Dietz K.J. Genotypic variation of the response to cadmium toxicity in Pisum sativum L. J. Exp. Bot. 2005, 56:167-178.
    • (2005) J. Exp. Bot. , vol.56 , pp. 167-178
    • Metwally, A.1    Safronova, V.I.2    Belimov, A.A.3    Dietz, K.J.4
  • 8
    • 0028871031 scopus 로고
    • Effect of Cd on RNA level as well as activity and molecular forms of ribonuclease in growing rice seedlings
    • Shah K., Dubey R.S. Effect of Cd on RNA level as well as activity and molecular forms of ribonuclease in growing rice seedlings. Plant Physiol. Biochem 1995, 33:577-584.
    • (1995) Plant Physiol. Biochem , vol.33 , pp. 577-584
    • Shah, K.1    Dubey, R.S.2
  • 9
    • 0037772259 scopus 로고    scopus 로고
    • Heavy metal toxicity: cadmium permeates through calcium channels and disturbs the plant water status
    • Perfus-Barbeoch L., Leonhardt N., Vavasseur A., Forestier C. Heavy metal toxicity: cadmium permeates through calcium channels and disturbs the plant water status. Plant J. 2002, 32:539-548.
    • (2002) Plant J. , vol.32 , pp. 539-548
    • Perfus-Barbeoch, L.1    Leonhardt, N.2    Vavasseur, A.3    Forestier, C.4
  • 10
    • 0035087896 scopus 로고    scopus 로고
    • Molecular mechanisms of plant metal tolerance and homeostasis
    • Clemens S. Molecular mechanisms of plant metal tolerance and homeostasis. Planta 2001, 212:475-486.
    • (2001) Planta , vol.212 , pp. 475-486
    • Clemens, S.1
  • 11
    • 0037002169 scopus 로고    scopus 로고
    • Phytochelatins and metallothioneins: roles in heavy metal detoxification and homeostasis
    • Cobbett C., Goldsbrough P. Phytochelatins and metallothioneins: roles in heavy metal detoxification and homeostasis. Annu. Rev. Plant Biol. 2002, 53:159-182.
    • (2002) Annu. Rev. Plant Biol. , vol.53 , pp. 159-182
    • Cobbett, C.1    Goldsbrough, P.2
  • 12
    • 0036006872 scopus 로고    scopus 로고
    • Cellular mechanisms for heavy metal detoxification and tolerance
    • Hall J.L. Cellular mechanisms for heavy metal detoxification and tolerance. J. Exp. Bot. 2002, 53:1-11.
    • (2002) J. Exp. Bot. , vol.53 , pp. 1-11
    • Hall, J.L.1
  • 13
    • 16544366305 scopus 로고    scopus 로고
    • Heavy metal stress. Activation of distinct mitogen-activated protein kinase pathways by copper and cadmium
    • Jonak C., Nakagami H., Hirt H. Heavy metal stress. Activation of distinct mitogen-activated protein kinase pathways by copper and cadmium. Plant Physiol. 2004, 136:3276-3283.
    • (2004) Plant Physiol. , vol.136 , pp. 3276-3283
    • Jonak, C.1    Nakagami, H.2    Hirt, H.3
  • 16
    • 27144455811 scopus 로고    scopus 로고
    • Identification of cadmium-regulated genes by cDNA-AFLP in the heavy metal accumulator Brassica juncea L
    • Fusco N., Micheletto L., Dal Corso G., Borgato L., Furini A. Identification of cadmium-regulated genes by cDNA-AFLP in the heavy metal accumulator Brassica juncea L. J. Exp. Bot. 2005, 56:3017-3027.
    • (2005) J. Exp. Bot. , vol.56 , pp. 3017-3027
    • Fusco, N.1    Micheletto, L.2    Dal Corso, G.3    Borgato, L.4    Furini, A.5
  • 17
    • 33644963581 scopus 로고    scopus 로고
    • Cadmium and lead contamination in japonica rice grains and its variation among the different locations in southeast China
    • Cheng F., Zhao N., Xu H., Li Y., Zhang W., Zhu Z., Chen M. Cadmium and lead contamination in japonica rice grains and its variation among the different locations in southeast China. Sci. Total Environ. 2006, 359:156-166.
    • (2006) Sci. Total Environ. , vol.359 , pp. 156-166
    • Cheng, F.1    Zhao, N.2    Xu, H.3    Li, Y.4    Zhang, W.5    Zhu, Z.6    Chen, M.7
  • 19
    • 0032990437 scopus 로고    scopus 로고
    • Suppression subtractive hybridization: a versatile method for identifying differentially expressed genes
    • Diatchenko L., Lukyanov S., Lau Y.F., Siebert P.D. Suppression subtractive hybridization: a versatile method for identifying differentially expressed genes. Methods Enzymol. 1999, 303:349-380.
    • (1999) Methods Enzymol. , vol.303 , pp. 349-380
    • Diatchenko, L.1    Lukyanov, S.2    Lau, Y.F.3    Siebert, P.D.4
  • 20
    • 0034667203 scopus 로고    scopus 로고
    • Mirror orientation selection (MOS): a method for eliminating false positive clones from libraries generated by suppression subtractive hybridization
    • Rebrikov D.V., Britanova O.V., Gurskaya N.G., Lukyanov K.A., Tarabykin V.S., Lukyanov S.A. Mirror orientation selection (MOS): a method for eliminating false positive clones from libraries generated by suppression subtractive hybridization. Nucleic Acids Res. 2000, 28:E90.
    • (2000) Nucleic Acids Res. , vol.28
    • Rebrikov, D.V.1    Britanova, O.V.2    Gurskaya, N.G.3    Lukyanov, K.A.4    Tarabykin, V.S.5    Lukyanov, S.A.6
  • 21
    • 28544447373 scopus 로고    scopus 로고
    • Cadmium toxicity in plants: is there any analogy to its carcinogenic effect in mammalian cells?
    • Deckert J. Cadmium toxicity in plants: is there any analogy to its carcinogenic effect in mammalian cells?. BioMetals 2005, 18:475-481.
    • (2005) BioMetals , vol.18 , pp. 475-481
    • Deckert, J.1
  • 23
    • 33751011307 scopus 로고    scopus 로고
    • Toxic metal accumulation, responses to exposure and mechanisms of tolerance in plants
    • Clemens S. Toxic metal accumulation, responses to exposure and mechanisms of tolerance in plants. Biochimie 2006, 88:1707-1719.
    • (2006) Biochimie , vol.88 , pp. 1707-1719
    • Clemens, S.1
  • 24
    • 33751255068 scopus 로고    scopus 로고
    • Cadmium toxicity in animal cells by interference with essential metals
    • Martelli A., Rousselet E., Dycke C., Bouron A., Moulis J.M. Cadmium toxicity in animal cells by interference with essential metals. Biochimie 2006, 88:1807-1814.
    • (2006) Biochimie , vol.88 , pp. 1807-1814
    • Martelli, A.1    Rousselet, E.2    Dycke, C.3    Bouron, A.4    Moulis, J.M.5
  • 25
    • 33751002324 scopus 로고    scopus 로고
    • Cadmium: cellular effects, modifications of biomolecules, modulation of DNA repair and genotoxic consequences (a review)
    • Bertin G., Averbeck D. Cadmium: cellular effects, modifications of biomolecules, modulation of DNA repair and genotoxic consequences (a review). Biochimie 2006, 88:1549-1559.
    • (2006) Biochimie , vol.88 , pp. 1549-1559
    • Bertin, G.1    Averbeck, D.2
  • 26
    • 0035040432 scopus 로고    scopus 로고
    • Leaf chlorosis in oilseed rape plants (Brassica napus) grown on cadmium-polluted soil: causes and consequences for photosynthesis and growth
    • Baryla A., Carrier P., Franck F., Coulomb C., Sahut C., Havaux M. Leaf chlorosis in oilseed rape plants (Brassica napus) grown on cadmium-polluted soil: causes and consequences for photosynthesis and growth. Planta 2001, 212:696-709.
    • (2001) Planta , vol.212 , pp. 696-709
    • Baryla, A.1    Carrier, P.2    Franck, F.3    Coulomb, C.4    Sahut, C.5    Havaux, M.6
  • 27
    • 33746890568 scopus 로고    scopus 로고
    • The NRAMP family of metal-ion transporters
    • Nevo Y., Nelson N. The NRAMP family of metal-ion transporters. Biochim. Biophys. Acta 2006, 1763:609-620.
    • (2006) Biochim. Biophys. Acta , vol.1763 , pp. 609-620
    • Nevo, Y.1    Nelson, N.2
  • 28
    • 0034193304 scopus 로고    scopus 로고
    • Involvement of NRAMP1 from Arabidopsis thaliana in iron transport
    • Curie C., Alonso J.M., Le Jean M., Ecker J.R., Briat J.F. Involvement of NRAMP1 from Arabidopsis thaliana in iron transport. Biochem. J. 2000, 347:749-755.
    • (2000) Biochem. J. , vol.347 , pp. 749-755
    • Curie, C.1    Alonso, J.M.2    Le Jean, M.3    Ecker, J.R.4    Briat, J.F.5
  • 29
  • 30
    • 33846591865 scopus 로고    scopus 로고
    • Copper and iron homeostasis in Arabidopsis: responses to metal deficiencies, interactions and biotechnological applications
    • Puig S., Andrés-Colás N., García-Molina A., Peñarrubia L. Copper and iron homeostasis in Arabidopsis: responses to metal deficiencies, interactions and biotechnological applications. Plant Cell Environ. 2007, 30:271-290.
    • (2007) Plant Cell Environ. , vol.30 , pp. 271-290
    • Puig, S.1    Andrés-Colás, N.2    García-Molina, A.3    Peñarrubia, L.4
  • 31
    • 21444436752 scopus 로고    scopus 로고
    • MTP1 mops up excess zinc in Arabidopsis cells
    • Krämer U. MTP1 mops up excess zinc in Arabidopsis cells. Trends Plant Sci. 2005, 10:313-315.
    • (2005) Trends Plant Sci. , vol.10 , pp. 313-315
    • Krämer, U.1
  • 32
    • 0346120020 scopus 로고    scopus 로고
    • Poplar metal tolerance protein 1 confers zinc tolerance and is an oligomeric vacuolar zinc transporter with an essential leucine zipper motif
    • Blaudez D., Kohler A., Martin F., Sanders D., Chalot M. Poplar metal tolerance protein 1 confers zinc tolerance and is an oligomeric vacuolar zinc transporter with an essential leucine zipper motif. Plant Cell 2003, 15:2911-2928.
    • (2003) Plant Cell , vol.15 , pp. 2911-2928
    • Blaudez, D.1    Kohler, A.2    Martin, F.3    Sanders, D.4    Chalot, M.5
  • 33
    • 0038028683 scopus 로고    scopus 로고
    • Genes encoding proteins of the cation diffusion facilitator family that confer manganese tolerance
    • Delhaize E., Kataoka T., Hebb D.M., White R.G., Ryan P.R. Genes encoding proteins of the cation diffusion facilitator family that confer manganese tolerance. Plant Cell 2003, 15:1131-1142.
    • (2003) Plant Cell , vol.15 , pp. 1131-1142
    • Delhaize, E.1    Kataoka, T.2    Hebb, D.M.3    White, R.G.4    Ryan, P.R.5
  • 35
    • 0033102221 scopus 로고    scopus 로고
    • Overexpression of a novel Arabidopsis gene related to putative zinc-transporter genes from animals can lead to enhanced zinc resistance and accumulation
    • Van der Zaal B.J., Neuteboom L.W., Pinas J.E., Chardonnens A.N., Schat H., Verkleij J.A., Hooykaas P.J. Overexpression of a novel Arabidopsis gene related to putative zinc-transporter genes from animals can lead to enhanced zinc resistance and accumulation. Plant Physiol. 1999, 119:1047-1055.
    • (1999) Plant Physiol. , vol.119 , pp. 1047-1055
    • Van der Zaal, B.J.1    Neuteboom, L.W.2    Pinas, J.E.3    Chardonnens, A.N.4    Schat, H.5    Verkleij, J.A.6    Hooykaas, P.J.7
  • 36
    • 12444277336 scopus 로고    scopus 로고
    • Zinc transporter of Arabidopsis thaliana AtMTP1 is localized to vacuolar membranes and implicated in zinc homeostasis
    • Kobae Y., Uemura T., Sato M.H., Ohnishi M., Mimura T., Nakagawa T., Maeshima M. Zinc transporter of Arabidopsis thaliana AtMTP1 is localized to vacuolar membranes and implicated in zinc homeostasis. Plant Cell Physiol. 2004, 45:1749-1758.
    • (2004) Plant Cell Physiol. , vol.45 , pp. 1749-1758
    • Kobae, Y.1    Uemura, T.2    Sato, M.H.3    Ohnishi, M.4    Mimura, T.5    Nakagawa, T.6    Maeshima, M.7
  • 37
    • 3843079529 scopus 로고    scopus 로고
    • Two genes encoding Arabidopsis halleri MTP1 metal transport proteins co-segregate with zinc tolerance and account for high MTP1 transcript levels
    • Dräger D.B., Desbrosses-Fonrouge A.G., Krach C., Chardonnens A.N., Meyer R.C., Saumitou-Laprade P., Krämer U. Two genes encoding Arabidopsis halleri MTP1 metal transport proteins co-segregate with zinc tolerance and account for high MTP1 transcript levels. Plant J. 2004, 39:425-439.
    • (2004) Plant J. , vol.39 , pp. 425-439
    • Dräger, D.B.1    Desbrosses-Fonrouge, A.G.2    Krach, C.3    Chardonnens, A.N.4    Meyer, R.C.5    Saumitou-Laprade, P.6    Krämer, U.7
  • 38
    • 3242738624 scopus 로고    scopus 로고
    • The plant CDF family member TgMTP1 from the Ni/Zn hyperaccumulator Thlaspi goesingense acts to enhance efflux of Zn at the plasma membrane when expressed in Saccharomyces cerevisiae
    • Kim D., Gustin J.L., Lahner B., Persans M.W., Baek D., Yun D.J., Salt D.E. The plant CDF family member TgMTP1 from the Ni/Zn hyperaccumulator Thlaspi goesingense acts to enhance efflux of Zn at the plasma membrane when expressed in Saccharomyces cerevisiae. Plant J. 2004, 39:237-251.
    • (2004) Plant J. , vol.39 , pp. 237-251
    • Kim, D.1    Gustin, J.L.2    Lahner, B.3    Persans, M.W.4    Baek, D.5    Yun, D.J.6    Salt, D.E.7
  • 41
    • 36249002926 scopus 로고    scopus 로고
    • 1B-type heavy-metal ATPase, OsHMA9, is a metal efflux protein
    • 1B-type heavy-metal ATPase, OsHMA9, is a metal efflux protein. Plant Physiol. 2007, 145:831-842.
    • (2007) Plant Physiol. , vol.145 , pp. 831-842
    • Lee, S.1    Kim, Y.Y.2    Lee, Y.3    An, G.4
  • 44
    • 71249096111 scopus 로고    scopus 로고
    • Transcriptional regulation of metal transport genes and mineral nutrition during acclimatization to cadmium and zinc in the Cd/Zn hyperaccumulator, Thlaspi caerulescens (Ganges population)
    • Küpper H., Kochian L.V. Transcriptional regulation of metal transport genes and mineral nutrition during acclimatization to cadmium and zinc in the Cd/Zn hyperaccumulator, Thlaspi caerulescens (Ganges population). New Phytol. 2010, 185:114-129.
    • (2010) New Phytol. , vol.185 , pp. 114-129
    • Küpper, H.1    Kochian, L.V.2
  • 45
    • 51649117559 scopus 로고    scopus 로고
    • Proteomics applied on plant abiotic stresses: role of heat shock proteins (HSP)
    • Timperio A.M., Egidi M.G., Zolla L. Proteomics applied on plant abiotic stresses: role of heat shock proteins (HSP). J. Proteomics 2008, 71:391-411.
    • (2008) J. Proteomics , vol.71 , pp. 391-411
    • Timperio, A.M.1    Egidi, M.G.2    Zolla, L.3
  • 46
    • 0032893365 scopus 로고    scopus 로고
    • Metal stress response and tolerance of cultured cells from Silene vulgaris and Lycopersicon peruvianum: role of heat stress proteins
    • Wollgiehn R., Neumann D. Metal stress response and tolerance of cultured cells from Silene vulgaris and Lycopersicon peruvianum: role of heat stress proteins. J. Plant Physiol. 1999, 154:547-553.
    • (1999) J. Plant Physiol. , vol.154 , pp. 547-553
    • Wollgiehn, R.1    Neumann, D.2
  • 47
  • 50
    • 0036001088 scopus 로고    scopus 로고
    • Plant responses to abiotic stresses: heavy metal-induced oxidative stress and protection by mycorrhization
    • Schützendübel A., Polle A. Plant responses to abiotic stresses: heavy metal-induced oxidative stress and protection by mycorrhization. J. Exp. Bot. 2002, 53:1351-1365.
    • (2002) J. Exp. Bot. , vol.53 , pp. 1351-1365
    • Schützendübel, A.1    Polle, A.2
  • 51
    • 33750832332 scopus 로고    scopus 로고
    • Molecular analyses of the metallothionein gene family in rice (Oryza sativa L.)
    • Zhou G., Xu Y., Li J., Yang L., Liu J.Y. Molecular analyses of the metallothionein gene family in rice (Oryza sativa L.). J. Biochem. Mol. Biol. 2006, 39:595-606.
    • (2006) J. Biochem. Mol. Biol. , vol.39 , pp. 595-606
    • Zhou, G.1    Xu, Y.2    Li, J.3    Yang, L.4    Liu, J.Y.5
  • 52
    • 0001295143 scopus 로고    scopus 로고
    • Response to cadmium in higher plants
    • Toppi L.S., Gabbrielli R. Response to cadmium in higher plants. Envir. Exp. Bota 1999, 41:105-130.
    • (1999) Envir. Exp. Bota , vol.41 , pp. 105-130
    • Toppi, L.S.1    Gabbrielli, R.2
  • 53
    • 71249099082 scopus 로고    scopus 로고
    • Time course analysis of gene regulation under cadmium stress in rice
    • Ogawa I., Nakanishi H., Mori S., Nishizawa N.K. Time course analysis of gene regulation under cadmium stress in rice. Plant Soil 2009, 325:97-108.
    • (2009) Plant Soil , vol.325 , pp. 97-108
    • Ogawa, I.1    Nakanishi, H.2    Mori, S.3    Nishizawa, N.K.4
  • 55
    • 78649832390 scopus 로고    scopus 로고
    • Root responses to cadmium in the rhizosphere: a review
    • Lux A., Martinka M., Vaculík M., White P.J. Root responses to cadmium in the rhizosphere: a review. J. Exp. Bot. 2011, 62:21-37.
    • (2011) J. Exp. Bot. , vol.62 , pp. 21-37
    • Lux, A.1    Martinka, M.2    Vaculík, M.3    White, P.J.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.