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Volumn 14, Issue 1, 2013, Pages

Genome-wide transcriptional analysis of T cell activation reveals differential gene expression associated with psoriasis

Author keywords

Gene expression; Gene network; Genetic pathway; Microarray; Psoriasis; T cell

Indexed keywords

KRUPPEL LIKE FACTOR 6; TRANSCRIPTOME;

EID: 84887932028     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-14-825     Document Type: Article
Times cited : (26)

References (69)
  • 1
    • 84872593263 scopus 로고    scopus 로고
    • Psoriasis epidemiology: the interplay of genes and the environment
    • Enamandram M, Kimball AB. Psoriasis epidemiology: the interplay of genes and the environment. J Invest Dermatol 2013, 133(2):287-289.
    • (2013) J Invest Dermatol , vol.133 , Issue.2 , pp. 287-289
    • Enamandram, M.1    Kimball, A.B.2
  • 2
    • 0033953110 scopus 로고    scopus 로고
    • CD69, HLA-DR and the IL-2R identify persistently activated T cells in psoriasis vulgaris lesional skin: blood and skin comparisons by flow cytometry
    • Ferenczi K, Burack L, Pope M, Krueger JG, Austin LM. CD69, HLA-DR and the IL-2R identify persistently activated T cells in psoriasis vulgaris lesional skin: blood and skin comparisons by flow cytometry. J Autoimmun 2000, 14(1):63-78.
    • (2000) J Autoimmun , vol.14 , Issue.1 , pp. 63-78
    • Ferenczi, K.1    Burack, L.2    Pope, M.3    Krueger, J.G.4    Austin, L.M.5
  • 3
    • 34447539622 scopus 로고    scopus 로고
    • Pathogenesis and clinical features of psoriasis
    • Griffiths CE, Barker JN. Pathogenesis and clinical features of psoriasis. Lancet 2007, 370(9583):263-271.
    • (2007) Lancet , vol.370 , Issue.9583 , pp. 263-271
    • Griffiths, C.E.1    Barker, J.N.2
  • 4
    • 0018321051 scopus 로고
    • Cyclosporin A for psoriasis
    • Mueller W, Herrmann B. Cyclosporin A for psoriasis. N Engl J Med 1979, 301(10):555.
    • (1979) N Engl J Med , vol.301 , Issue.10 , pp. 555
    • Mueller, W.1    Herrmann, B.2
  • 5
    • 0029861579 scopus 로고    scopus 로고
    • Dermal injection of immunocytes induces psoriasis
    • Wrone-Smith T, Nickoloff BJ. Dermal injection of immunocytes induces psoriasis. J Clin Invest 1996, 98(8):1878-1887.
    • (1996) J Clin Invest , vol.98 , Issue.8 , pp. 1878-1887
    • Wrone-Smith, T.1    Nickoloff, B.J.2
  • 6
    • 0034605033 scopus 로고    scopus 로고
    • Blockade of T lymphocyte costimulation with cytotoxic T lymphocyte-associated antigen 4-immunoglobulin (CTLA4Ig) reverses the cellular pathology of psoriatic plaques, including the activation of keratinocytes, dendritic cells, and endothelial cells
    • Abrams JR, Kelley SL, Hayes E, Kikuchi T, Brown MJ, Kang S, Lebwohl MG, Guzzo CA, Jegasothy BV, Linsley PS, et al. Blockade of T lymphocyte costimulation with cytotoxic T lymphocyte-associated antigen 4-immunoglobulin (CTLA4Ig) reverses the cellular pathology of psoriatic plaques, including the activation of keratinocytes, dendritic cells, and endothelial cells. J Exp Med 2000, 192(5):681-694.
    • (2000) J Exp Med , vol.192 , Issue.5 , pp. 681-694
    • Abrams, J.R.1    Kelley, S.L.2    Hayes, E.3    Kikuchi, T.4    Brown, M.J.5    Kang, S.6    Lebwohl, M.G.7    Guzzo, C.A.8    Jegasothy, B.V.9    Linsley, P.S.10
  • 8
    • 0028990380 scopus 로고
    • Response of psoriasis to a lymphocyte-selective toxin (DAB389IL-2) suggests a primary immune, but not keratinocyte, pathogenic basis
    • Gottlieb SL, Gilleaudeau P, Johnson R, Estes L, Woodworth TG, Gottlieb AB, Krueger JG. Response of psoriasis to a lymphocyte-selective toxin (DAB389IL-2) suggests a primary immune, but not keratinocyte, pathogenic basis. Nat Med 1995, 1(5):442-447.
    • (1995) Nat Med , vol.1 , Issue.5 , pp. 442-447
    • Gottlieb, S.L.1    Gilleaudeau, P.2    Johnson, R.3    Estes, L.4    Woodworth, T.G.5    Gottlieb, A.B.6    Krueger, J.G.7
  • 9
    • 0032698980 scopus 로고    scopus 로고
    • Skin innate immune system in psoriasis: friend or foe?
    • Nickoloff BJ. Skin innate immune system in psoriasis: friend or foe?. J Clin Invest 1999, 104(9):1161-1164.
    • (1999) J Clin Invest , vol.104 , Issue.9 , pp. 1161-1164
    • Nickoloff, B.J.1
  • 11
    • 0027439191 scopus 로고
    • The cytokine network in lesional and lesion-free psoriatic skin is characterized by a T-helper type 1 cell-mediated response
    • Uyemura K, Yamamura M, Fivenson DF, Modlin RL, Nickoloff BJ. The cytokine network in lesional and lesion-free psoriatic skin is characterized by a T-helper type 1 cell-mediated response. J Invest Dermatol 1993, 101(5):701-705.
    • (1993) J Invest Dermatol , vol.101 , Issue.5 , pp. 701-705
    • Uyemura, K.1    Yamamura, M.2    Fivenson, D.F.3    Modlin, R.L.4    Nickoloff, B.J.5
  • 12
    • 67651154105 scopus 로고    scopus 로고
    • Production of interleukin 22 but not interleukin 17 by a subset of human skin-homing memory T cells
    • Duhen T, Geiger R, Jarrossay D, Lanzavecchia A, Sallusto F. Production of interleukin 22 but not interleukin 17 by a subset of human skin-homing memory T cells. Nat Immunol 2009, 10(8):857-863.
    • (2009) Nat Immunol , vol.10 , Issue.8 , pp. 857-863
    • Duhen, T.1    Geiger, R.2    Jarrossay, D.3    Lanzavecchia, A.4    Sallusto, F.5
  • 15
    • 84871861623 scopus 로고    scopus 로고
    • Cross-study homogeneity of psoriasis gene expression in skin across a large expression range
    • Bigler J, Rand HA, Kerkof K, Timour M, Russell CB. Cross-study homogeneity of psoriasis gene expression in skin across a large expression range. PLoS One 2013, 8(1):e52242.
    • (2013) PLoS One , vol.8 , Issue.1
    • Bigler, J.1    Rand, H.A.2    Kerkof, K.3    Timour, M.4    Russell, C.B.5
  • 17
    • 84862756451 scopus 로고    scopus 로고
    • Global transcriptional analysis of psoriatic skin and blood confirms known disease-associated pathways and highlights novel genomic " hot spots" for differentially expressed genes
    • Coda AB, Icen M, Smith JR, Sinha AA. Global transcriptional analysis of psoriatic skin and blood confirms known disease-associated pathways and highlights novel genomic " hot spots" for differentially expressed genes. Genomics 2012, 100(1):18-26.
    • (2012) Genomics , vol.100 , Issue.1 , pp. 18-26
    • Coda, A.B.1    Icen, M.2    Smith, J.R.3    Sinha, A.A.4
  • 21
    • 0037417136 scopus 로고    scopus 로고
    • Identification of NF-kappa B-regulated genes induced by TNFalpha utilizing expression profiling and RNA interference
    • Zhou A, Scoggin S, Gaynor RB, Williams NS. Identification of NF-kappa B-regulated genes induced by TNFalpha utilizing expression profiling and RNA interference. Oncogene 2003, 22(13):2054-2064.
    • (2003) Oncogene , vol.22 , Issue.13 , pp. 2054-2064
    • Zhou, A.1    Scoggin, S.2    Gaynor, R.B.3    Williams, N.S.4
  • 22
    • 1642402217 scopus 로고    scopus 로고
    • Expression profiling of IL-10-regulated genes in human monocytes and peripheral blood mononuclear cells from psoriatic patients during IL-10 therapy
    • Jung M, Sabat R, Kratzschmar J, Seidel H, Wolk K, Schonbein C, Schutt S, Friedrich M, Docke WD, Asadullah K, et al. Expression profiling of IL-10-regulated genes in human monocytes and peripheral blood mononuclear cells from psoriatic patients during IL-10 therapy. Eur J Immunol 2004, 34(2):481-493.
    • (2004) Eur J Immunol , vol.34 , Issue.2 , pp. 481-493
    • Jung, M.1    Sabat, R.2    Kratzschmar, J.3    Seidel, H.4    Wolk, K.5    Schonbein, C.6    Schutt, S.7    Friedrich, M.8    Docke, W.D.9    Asadullah, K.10
  • 23
    • 22544480310 scopus 로고    scopus 로고
    • Gene expression profiling of peripheral blood mononuclear leukocytes from psoriasis patients identifies new immune regulatory molecules
    • Koczan D, Guthke R, Thiesen HJ, Ibrahim SM, Kundt G, Krentz H, Gross G, Kunz M. Gene expression profiling of peripheral blood mononuclear leukocytes from psoriasis patients identifies new immune regulatory molecules. Eur J Dermatol 2005, 15(4):251-257.
    • (2005) Eur J Dermatol , vol.15 , Issue.4 , pp. 251-257
    • Koczan, D.1    Guthke, R.2    Thiesen, H.J.3    Ibrahim, S.M.4    Kundt, G.5    Krentz, H.6    Gross, G.7    Kunz, M.8
  • 24
    • 70350327337 scopus 로고    scopus 로고
    • A global gene expression analysis of the peripheral blood mononuclear cells reveals the gene expression signature in psoriasis
    • Lee SK, Jeon EK, Kim YJ, Seo SH, Kim CD, Lim JS, Lee JH. A global gene expression analysis of the peripheral blood mononuclear cells reveals the gene expression signature in psoriasis. Ann Dermatol 2009, 21(3):237-242.
    • (2009) Ann Dermatol , vol.21 , Issue.3 , pp. 237-242
    • Lee, S.K.1    Jeon, E.K.2    Kim, Y.J.3    Seo, S.H.4    Kim, C.D.5    Lim, J.S.6    Lee, J.H.7
  • 25
    • 79954576925 scopus 로고    scopus 로고
    • Gene expression profiles in peripheral blood for the diagnosis of autoimmune diseases
    • Mesko B, Poliska S, Nagy L. Gene expression profiles in peripheral blood for the diagnosis of autoimmune diseases. Trends Mol Med 2011, 17(4):223-233.
    • (2011) Trends Mol Med , vol.17 , Issue.4 , pp. 223-233
    • Mesko, B.1    Poliska, S.2    Nagy, L.3
  • 26
    • 0020678796 scopus 로고
    • Simultaneous flow cytometric analysis of human T cell activation antigen expression and DNA content
    • Cotner T, Williams JM, Christenson L, Shapiro HM, Strom TB, Strominger J. Simultaneous flow cytometric analysis of human T cell activation antigen expression and DNA content. J Exp Med 1983, 157(2):461-472.
    • (1983) J Exp Med , vol.157 , Issue.2 , pp. 461-472
    • Cotner, T.1    Williams, J.M.2    Christenson, L.3    Shapiro, H.M.4    Strom, T.B.5    Strominger, J.6
  • 27
    • 79956069829 scopus 로고    scopus 로고
    • Transcription factor Foxp1 exerts essential cell-intrinsic regulation of the quiescence of naive T cells
    • Feng X, Wang H, Takata H, Day TJ, Willen J, Hu H. Transcription factor Foxp1 exerts essential cell-intrinsic regulation of the quiescence of naive T cells. Nat Immunol 2011, 12(6):544-550.
    • (2011) Nat Immunol , vol.12 , Issue.6 , pp. 544-550
    • Feng, X.1    Wang, H.2    Takata, H.3    Day, T.J.4    Willen, J.5    Hu, H.6
  • 28
    • 60549111634 scopus 로고    scopus 로고
    • WGCNA: an R package for weighted correlation network analysis
    • Langfelder P, Horvath S. WGCNA: an R package for weighted correlation network analysis. BMC Bioinforma 2008, 9:559.
    • (2008) BMC Bioinforma , vol.9 , pp. 559
    • Langfelder, P.1    Horvath, S.2
  • 29
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • da Huang W, Sherman BT, Lempicki RA. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc 2009, 4(1):44-57.
    • (2009) Nat Protoc , vol.4 , Issue.1 , pp. 44-57
    • da Huang, W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 33
    • 56649106357 scopus 로고    scopus 로고
    • SGNP: an essential Stress Granule/Nucleolar Protein potentially involved in 5.8s rRNA processing/transport
    • Zhu CH, Kim J, Shay JW, Wright WE. SGNP: an essential Stress Granule/Nucleolar Protein potentially involved in 5.8s rRNA processing/transport. PLoS One 2008, 3(11):e3716.
    • (2008) PLoS One , vol.3 , Issue.11
    • Zhu, C.H.1    Kim, J.2    Shay, J.W.3    Wright, W.E.4
  • 34
    • 84859393349 scopus 로고    scopus 로고
    • Ribosome biogenesis and control of cell proliferation: p53 is not alone
    • Donati G, Montanaro L, Derenzini M. Ribosome biogenesis and control of cell proliferation: p53 is not alone. Cancer Res 2012, 72(7):1602-1607.
    • (2012) Cancer Res , vol.72 , Issue.7 , pp. 1602-1607
    • Donati, G.1    Montanaro, L.2    Derenzini, M.3
  • 36
    • 77958164865 scopus 로고    scopus 로고
    • LEF-1 is a prosurvival factor in chronic lymphocytic leukemia and is expressed in the preleukemic state of monoclonal B-cell lymphocytosis
    • Gutierrez A, Tschumper RC, Wu X, Shanafelt TD, Eckel-Passow J, Huddleston PM, Slager SL, Kay NE, Jelinek DF. LEF-1 is a prosurvival factor in chronic lymphocytic leukemia and is expressed in the preleukemic state of monoclonal B-cell lymphocytosis. Blood 2010, 116(16):2975-2983.
    • (2010) Blood , vol.116 , Issue.16 , pp. 2975-2983
    • Gutierrez, A.1    Tschumper, R.C.2    Wu, X.3    Shanafelt, T.D.4    Eckel-Passow, J.5    Huddleston, P.M.6    Slager, S.L.7    Kay, N.E.8    Jelinek, D.F.9
  • 38
    • 59249100224 scopus 로고    scopus 로고
    • Genome-wide interrogation of germline genetic variation associated with treatment response in childhood acute lymphoblastic leukemia
    • Yang JJ, Cheng C, Yang W, Pei D, Cao X, Fan Y, Pounds SB, Neale G, Trevino LR, French D, et al. Genome-wide interrogation of germline genetic variation associated with treatment response in childhood acute lymphoblastic leukemia. Jama 2009, 301(4):393-403.
    • (2009) Jama , vol.301 , Issue.4 , pp. 393-403
    • Yang, J.J.1    Cheng, C.2    Yang, W.3    Pei, D.4    Cao, X.5    Fan, Y.6    Pounds, S.B.7    Neale, G.8    Trevino, L.R.9    French, D.10
  • 39
    • 70350049112 scopus 로고    scopus 로고
    • Psoriasis and risk of incident cancer: an inception cohort study with a nested case-control analysis
    • Brauchli YB, Jick SS, Miret M, Meier CR. Psoriasis and risk of incident cancer: an inception cohort study with a nested case-control analysis. J Invest Dermatol 2009, 129(11):2604-2612.
    • (2009) J Invest Dermatol , vol.129 , Issue.11 , pp. 2604-2612
    • Brauchli, Y.B.1    Jick, S.S.2    Miret, M.3    Meier, C.R.4
  • 42
    • 79952021346 scopus 로고    scopus 로고
    • Biology of Kruppel-like factor 6 transcriptional regulator in cell life and death
    • Andreoli V, Gehrau RC, Bocco JL. Biology of Kruppel-like factor 6 transcriptional regulator in cell life and death. IUBMB Life 2010, 62(12):896-905.
    • (2010) IUBMB Life , vol.62 , Issue.12 , pp. 896-905
    • Andreoli, V.1    Gehrau, R.C.2    Bocco, J.L.3
  • 43
    • 78649455728 scopus 로고    scopus 로고
    • Role of Kruppel-like factors in leukocyte development, function, and disease
    • Cao Z, Sun X, Icli B, Wara AK, Feinberg MW. Role of Kruppel-like factors in leukocyte development, function, and disease. Blood 2010, 116(22):4404-4414.
    • (2010) Blood , vol.116 , Issue.22 , pp. 4404-4414
    • Cao, Z.1    Sun, X.2    Icli, B.3    Wara, A.K.4    Feinberg, M.W.5
  • 44
    • 0037804772 scopus 로고    scopus 로고
    • Regulation of T-cell receptor D beta 1 promoter by KLF5 through reiterated GC-rich motifs
    • Yang XO, Doty RT, Hicks JS, Willerford DM. Regulation of T-cell receptor D beta 1 promoter by KLF5 through reiterated GC-rich motifs. Blood 2003, 101(11):4492-4499.
    • (2003) Blood , vol.101 , Issue.11 , pp. 4492-4499
    • Yang, X.O.1    Doty, R.T.2    Hicks, J.S.3    Willerford, D.M.4
  • 48
    • 47949094965 scopus 로고    scopus 로고
    • Integration of metabolism and inflammation by lipid-activated nuclear receptors
    • Bensinger SJ, Tontonoz P. Integration of metabolism and inflammation by lipid-activated nuclear receptors. Nature 2008, 454(7203):470-477.
    • (2008) Nature , vol.454 , Issue.7203 , pp. 470-477
    • Bensinger, S.J.1    Tontonoz, P.2
  • 49
    • 84863202384 scopus 로고    scopus 로고
    • Molecular mechanisms of metabolic reprogramming in proliferating cells: implications for T-cell-mediated immunity
    • Marelli-Berg FM, Fu H, Mauro C. Molecular mechanisms of metabolic reprogramming in proliferating cells: implications for T-cell-mediated immunity. Immunology 2012, 136(4):363-369.
    • (2012) Immunology , vol.136 , Issue.4 , pp. 363-369
    • Marelli-Berg, F.M.1    Fu, H.2    Mauro, C.3
  • 50
    • 77953534607 scopus 로고    scopus 로고
    • Metabolism in T cell activation and differentiation
    • Pearce EL. Metabolism in T cell activation and differentiation. Curr Opin Immunol 2010, 22(3):314-320.
    • (2010) Curr Opin Immunol , vol.22 , Issue.3 , pp. 314-320
    • Pearce, E.L.1
  • 51
    • 83655165310 scopus 로고    scopus 로고
    • H2S-Induced sulfhydration of the phosphatase PTP1B and its role in the endoplasmic reticulum stress response
    • Krishnan N, Fu C, Pappin DJ, Tonks NK. H2S-Induced sulfhydration of the phosphatase PTP1B and its role in the endoplasmic reticulum stress response. Sci Signal 2011, 4(203):ra86.
    • (2011) Sci Signal , vol.4 , Issue.203
    • Krishnan, N.1    Fu, C.2    Pappin, D.J.3    Tonks, N.K.4
  • 53
    • 59849105065 scopus 로고    scopus 로고
    • CHAC1/MGC4504 is a novel proapoptotic component of the unfolded protein response, downstream of the ATF4-ATF3-CHOP cascade
    • Mungrue IN, Pagnon J, Kohannim O, Gargalovic PS, Lusis AJ. CHAC1/MGC4504 is a novel proapoptotic component of the unfolded protein response, downstream of the ATF4-ATF3-CHOP cascade. J Immunol 2009, 182(1):466-476.
    • (2009) J Immunol , vol.182 , Issue.1 , pp. 466-476
    • Mungrue, I.N.1    Pagnon, J.2    Kohannim, O.3    Gargalovic, P.S.4    Lusis, A.J.5
  • 55
    • 80054026314 scopus 로고    scopus 로고
    • A review of the mammalian unfolded protein response
    • Chakrabarti A, Chen AW, Varner JD. A review of the mammalian unfolded protein response. Biotechnol Bioeng 2011, 108(12):2777-2793.
    • (2011) Biotechnol Bioeng , vol.108 , Issue.12 , pp. 2777-2793
    • Chakrabarti, A.1    Chen, A.W.2    Varner, J.D.3
  • 56
  • 57
    • 84864345963 scopus 로고    scopus 로고
    • Lighting the fires within: the cell biology of autoinflammatory diseases
    • Park H, Bourla AB, Kastner DL, Colbert RA, Siegel RM. Lighting the fires within: the cell biology of autoinflammatory diseases. Nat Rev Immunol 2012, 12(8):570-580.
    • (2012) Nat Rev Immunol , vol.12 , Issue.8 , pp. 570-580
    • Park, H.1    Bourla, A.B.2    Kastner, D.L.3    Colbert, R.A.4    Siegel, R.M.5
  • 59
    • 84862777960 scopus 로고    scopus 로고
    • IFN-alpha enhances IL-22 receptor expression in keratinocytes: a possible role in the development of psoriasis
    • Tohyama M, Yang L, Hanakawa Y, Dai X, Shirakata Y, Sayama K. IFN-alpha enhances IL-22 receptor expression in keratinocytes: a possible role in the development of psoriasis. J Invest Dermatol 2012, 132(7):1933-1935.
    • (2012) J Invest Dermatol , vol.132 , Issue.7 , pp. 1933-1935
    • Tohyama, M.1    Yang, L.2    Hanakawa, Y.3    Dai, X.4    Shirakata, Y.5    Sayama, K.6
  • 64
    • 0037316303 scopus 로고    scopus 로고
    • A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
    • Bolstad BM, Irizarry RA, Astrand M, Speed TP. A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 2003, 19(2):185-193.
    • (2003) Bioinformatics , vol.19 , Issue.2 , pp. 185-193
    • Bolstad, B.M.1    Irizarry, R.A.2    Astrand, M.3    Speed, T.P.4
  • 66
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: a practical and powerful approach to multiple testing
    • Benjamini YHM. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J R Stat Soc 1995, 57(1):289-300.
    • (1995) J R Stat Soc , vol.57 , Issue.1 , pp. 289-300
    • Benjamini, Y.H.M.1
  • 67
    • 84855846735 scopus 로고    scopus 로고
    • Comparing statistical methods for constructing large scale gene networks
    • Allen JD, Xie Y, Chen M, Girard L, Xiao G. Comparing statistical methods for constructing large scale gene networks. PLoS One 2012, 7(1):e29348.
    • (2012) PLoS One , vol.7 , Issue.1
    • Allen, J.D.1    Xie, Y.2    Chen, M.3    Girard, L.4    Xiao, G.5
  • 68
    • 23944458138 scopus 로고    scopus 로고
    • A general framework for weighted gene co-expression network analysis
    • Zhang B, Horvath S. A general framework for weighted gene co-expression network analysis. Stat Appl Genet Mol Biol 2005, 4(1):1544-6115.
    • (2005) Stat Appl Genet Mol Biol , vol.4 , Issue.1 , pp. 1544-6115
    • Zhang, B.1    Horvath, S.2
  • 69
    • 40049099114 scopus 로고    scopus 로고
    • Defining clusters from a hierarchical cluster tree: the Dynamic Tree Cut package for R
    • Langfelder P, Zhang B, Horvath S. Defining clusters from a hierarchical cluster tree: the Dynamic Tree Cut package for R. Bioinformatics 2008, 24(5):719-720.
    • (2008) Bioinformatics , vol.24 , Issue.5 , pp. 719-720
    • Langfelder, P.1    Zhang, B.2    Horvath, S.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.