-
1
-
-
0035656688
-
Non-coding rna genes and the modern rna world
-
Eddy, S. R. (2001). Non-coding RNA genes and the modern RNA world. Nat. Rev. Genet. 2, 919-929.
-
(2001)
Nat. Rev. Genet.
, vol.2
, pp. 919-929
-
-
Eddy, S.R.1
-
2
-
-
5744253543
-
The hidden genetic program of complex organisms
-
Mattick, J. S. (2004). The hidden genetic program of complex organisms. Sci. Amer. 291, 61-67.
-
(2004)
Sci. Amer.
, vol.291
, pp. 61-67
-
-
Mattick, J.S.1
-
3
-
-
34249423987
-
The critical collaboration between art and science: Applying an experiment on a bird in an air pump to the ramifications of genomics on society
-
Schlick, T. (2005). The critical collaboration between art and science: Applying an Experiment on a Bird in an Air Pump to the Ramifications of Genomics on Society. Leonardo, 38, 323-329.
-
(2005)
Leonardo
, vol.38
, pp. 323-329
-
-
Schlick, T.1
-
4
-
-
0032870204
-
Structural motifs in rna
-
Moore, P. B. (1999). Structural motifs in RNA. Ann. Rev. Biochem. 68, 287-300.
-
(1999)
Ann. Rev. Biochem.
, vol.68
, pp. 287-300
-
-
Moore, P.B.1
-
5
-
-
0029073091
-
The crystal structure of an all-rna hammerhead ribozyme: A proposed mechanism for rna catalytic cleavage
-
Scott, W. G., Finch, J. T. & Klug, A. (1995). The crystal structure of an all-RNA hammerhead ribozyme: A proposed mechanism for RNA catalytic cleavage. Cell, 81, 991-1002.
-
(1995)
Cell
, vol.81
, pp. 991-1002
-
-
Scott, W.G.1
Finch, J.T.2
Klug, A.3
-
7
-
-
0033862354
-
The crystal structure of yeast phenylalanine trna at 1.93 å resolution: A classic structure revisited
-
Shi, H. & Moore, P. (2000). The crystal structure of yeast phenylalanine tRNA at 1.93 Å resolution: A classic structure revisited. RNA, 6, 1091-1105.
-
(2000)
RNA
, vol.6
, pp. 1091-1105
-
-
Shi, H.1
Moore, P.2
-
8
-
-
0032497521
-
Crystal structure of a hepatitis delta virus ribozyme
-
Ferré-D'Amaré, A. R., Zhou, K. & Doudna, J. A. (1998). Crystal structure of a hepatitis delta virus ribozyme. Nature, 395, 567-574.
-
(1998)
Nature
, vol.395
, pp. 567-574
-
-
Ferré-D'Amaré, A.R.1
Zhou, K.2
Doudna, J.A.3
-
9
-
-
0032881809
-
X-ray crystal structure of 70s ribosome functional complexes
-
Cate, J. H., Yusupov, M. M., Yusupova, C. Z., Earnest, T. N. & Noller, H. F. (1999). X-ray crystal structure of 70S ribosome functional complexes. Science, 285, 2095-2104.
-
(1999)
Science
, vol.285
, pp. 2095-2104
-
-
Cate, J.H.1
Yusupov, M.M.2
Yusupova, C.Z.3
Earnest, T.N.4
Noller, H.F.5
-
10
-
-
0034636956
-
The ribosome is a ribozyme
-
Cech, T. R. (2000). The ribosome is a ribozyme. Science, 289, 878-879.
-
(2000)
Science
, vol.289
, pp. 878-879
-
-
Cech, T.R.1
-
11
-
-
0034637111
-
The complete atomic structure of the large ribosomal subunit at 2.4 å resolution
-
Ban, N., Nissen, P., Hansen, J., Moore, P. B. & Steitz, T. A. (2000). The complete atomic structure of the large ribosomal subunit at 2.4 Å resolution. Science, 289, 905-920.
-
(2000)
Science
, vol.289
, pp. 905-920
-
-
Ban, N.1
Nissen, P.2
Hansen, J.3
Moore, P.B.4
Steitz, T.A.5
-
12
-
-
0034637161
-
The structural basis of ribosome activity in peptide bond synthesis
-
Nissen, P., Hansen, J., Ban, N., Moore, P. B. & Steitz, T. A. (2000). The structural basis of ribosome activity in peptide bond synthesis. Science, 289, 920-930.
-
(2000)
Science
, vol.289
, pp. 920-930
-
-
Nissen, P.1
Hansen, J.2
Ban, N.3
Moore, P.B.4
Steitz, T.A.5
-
13
-
-
0034699456
-
Small subunit, big science
-
Williamson, J. R. (2000). Small subunit, big science. Nature, 407, 306-307.
-
(2000)
Nature
, vol.407
, pp. 306-307
-
-
Williamson, J.R.1
-
14
-
-
0034699518
-
Structure of the 30s ribosomal subunit
-
Wimberly, B. T., Brodersen, D. E., Clemons Jr., W. M., Morgan-Warren, R. J., Carter, A. P., Vonrhein, C., Hartsch, T. & Ramakrishnan, V. (2000). Structure of the 30S ribosomal subunit. Nature, 407, 327-339.
-
(2000)
Nature
, vol.407
, pp. 327-339
-
-
Wimberly, B.T.1
Brodersen, D.E.2
Clemons Jr., W.M.3
Morgan-Warren, R.J.4
Carter, A.P.5
Vonrhein, C.6
Hartsch, T.7
Ramakrishnan, V.8
-
15
-
-
0034699519
-
Functional insights from the structure of the 30s ribosomal subunit and its interactions with antibiotics
-
Carter, A. P., Clemons, W. M., Brodersen, D. E., Morgan-Warren, R. J., Wimberly, B. T. & Ramakrishnan, V. (2000). Functional insights from the structure of the 30S ribosomal subunit and its interactions with antibiotics. Nature, 407, 340-348.
-
(2000)
Nature
, vol.407
, pp. 340-348
-
-
Carter, A.P.1
Clemons, W.M.2
Brodersen, D.E.3
Morgan-Warren, R.J.4
Wimberly, B.T.5
Ramakrishnan, V.6
-
16
-
-
0034268836
-
Structure of functionally activated small ribosomal subunit at 3.3 å resolution
-
Schluenzen, F., Tocilj, A., Zarivach, R., Harms, J., Gluehmann, M., Janell, D., Bashan, A., Bartels, H., Agmon, I., F. Franceschi & Yonath, A. (2000). Structure of functionally activated small ribosomal subunit at 3.3 Å resolution. Cell, 102, 615-623.
-
(2000)
Cell
, vol.102
, pp. 615-623
-
-
Schluenzen, F.1
Tocilj, A.2
Zarivach, R.3
Harms, J.4
Gluehmann, M.5
Janell, D.6
Bashan, A.7
Bartels, H.8
Agmon, I.9
Franceschi, F.10
Yonath, A.11
-
17
-
-
0035805213
-
Crystal structure of the ribosome at 5.5 å resolution
-
Yusupov, M. M., Yusupova, G. Z., Baucom, A., Lieberman, K., Earnest, T. N., Cate, J. H. D. & Noller, H. F. (2001). Crystal structure of the ribosome at 5.5 Å resolution. Science, 292, 883-896.
-
(2001)
Science
, vol.292
, pp. 883-896
-
-
Yusupov, M.M.1
Yusupova, G.Z.2
Baucom, A.3
Lieberman, K.4
Earnest, T.N.5
Cate, J.H.D.6
Noller, H.F.7
-
18
-
-
0034698298
-
One sequence, two ribozymes: Implications for the emergence of new ribozyme folds
-
Schultes, E. A. & Bartel, D. B. (2000). One sequence, two ribozymes: Implications for the emergence of new ribozyme folds. Science, 289, 448-452.
-
(2000)
Science
, vol.289
, pp. 448-452
-
-
Schultes, E.A.1
Bartel, D.B.2
-
20
-
-
0034705119
-
Structural diversity of self-cleaving ribozymes
-
Tang, J. & Breaker, R. R. (2001). Structural diversity of self-cleaving ribozymes. Proc. Natl. Acad. Sci. USA, 97, 5784-5789.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 5784-5789
-
-
Tang, J.1
Breaker, R.R.2
-
21
-
-
0037180804
-
A ribozyme composed of only two different nucleotides
-
Read, J. S. & Joyce, G. F. (2002). A ribozyme composed of only two different nucleotides. Nature, 420, 841-844.
-
(2002)
Nature
, vol.420
, pp. 841-844
-
-
Read, J.S.1
Joyce, G.F.2
-
22
-
-
0041840383
-
Censors of the genome
-
Lau, N. C. & Bartel, D. P. (2003). Censors of the genome. Sci. Amer. 289, 34-41.
-
(2003)
Sci. Amer.
, vol.289
, pp. 34-41
-
-
Lau, N.C.1
Bartel, D.P.2
-
23
-
-
18144365478
-
MicroRNA biogenesis and cancer
-
Gregory, R. I. & Shiekhattar, R. (2005). MicroRNA biogenesis and cancer. Cancer Res. 65, 3509-3512.
-
(2005)
Cancer Res.
, vol.65
, pp. 3509-3512
-
-
Gregory, R.I.1
Shiekhattar, R.2
-
24
-
-
20444460289
-
MicroRNA expression profiles classify human cancers
-
Lu, J., Getz, G., Miska, E. A., Alvarez-Saavedra, E., Lamb, J., Peck, D., Sweet-Cordero, A., Ebert, B. L., Mak, R. H., Ferando, A. A., Downing, J. R., Jacks, T., Horvitz, H. R. & Golub, T. R. (2005). MicroRNA expression profiles classify human cancers. Nature, 435, 834-838.
-
(2005)
Nature
, vol.435
, pp. 834-838
-
-
Lu, J.1
Getz, G.2
Miska, E.A.3
Alvarez-Saavedra, E.4
Lamb, J.5
Peck, D.6
Sweet-Cordero, A.7
Ebert, B.L.8
Mak, R.H.9
Ferando, A.A.10
Downing, J.R.11
Jacks, T.12
Horvitz, H.R.13
Golub, T.R.14
-
25
-
-
0345818258
-
MicroRNAs and cancer
-
McManus, M. T. (2003). MicroRNAs and cancer. Semin. Cancer Biol. 13, 253-258.
-
(2003)
Semin. Cancer Biol.
, vol.13
, pp. 253-258
-
-
McManus, M.T.1
-
26
-
-
54249116230
-
Genetic regulatory mechanisms in the synthesis of proteins
-
Jacob, F. & Monod, J. (1961). Genetic regulatory mechanisms in the synthesis of proteins. J. Mol. Biol. 3, 318-356.
-
(1961)
J. Mol. Biol.
, vol.3
, pp. 318-356
-
-
Jacob, F.1
Monod, J.2
-
27
-
-
0037123632
-
An expanding universe of noncoding rnas
-
Storz, G. (2002). An expanding universe of noncoding RNAs. Science, 296, 1260-1263.
-
(2002)
Science
, vol.296
, pp. 1260-1263
-
-
Storz, G.1
-
28
-
-
0038299558
-
Role of micrornas in plant and animal development
-
Carrington, J. C. & Ambros, V. (2003). Role of microRNAs in plant and animal development. Science, 301, 336-338.
-
(2003)
Science
, vol.301
, pp. 336-338
-
-
Carrington, J.C.1
Ambros, V.2
-
29
-
-
0037123606
-
RNA silencing: The genome's immune system
-
Plasterk, R. H. A. (2002). RNA silencing: The genome's immune system. Science, 296, 1263-1265.
-
(2002)
Science
, vol.296
, pp. 1263-1265
-
-
Plasterk, R.H.A.1
-
30
-
-
0037123601
-
Ancient pathways programmed by small rnas
-
Zamore, P. D. (2002). Ancient pathways programmed by small RNAs. Science, 296, 1265-1269.
-
(2002)
Science
, vol.296
, pp. 1265-1269
-
-
Zamore, P.D.1
-
31
-
-
85015069067
-
Controlling the double helix
-
Felsenfeld, G. & Groudine, M. (2003). Controlling the double helix. Nature, 421, 448-453.
-
(2003)
Nature
, vol.421
, pp. 448-453
-
-
Felsenfeld, G.1
Groudine, M.2
-
32
-
-
0037123639
-
RNA-dependent rna polymerases, viruses, and rna silencing
-
Ahlquist, P. (2002). RNA-dependent RNA polymerases, viruses, and RNA silencing. Science, 296, 1270-1273.
-
(2002)
Science
, vol.296
, pp. 1270-1273
-
-
Ahlquist, P.1
-
33
-
-
0037123630
-
Induction and suppression of rna silencing by an animal virus
-
Li, H., Li, W. X. & Ding, S. W. (2002). Induction and suppression of RNA silencing by an animal virus. Science, 296, 1319-1321.
-
(2002)
Science
, vol.296
, pp. 1319-1321
-
-
Li, H.1
Li, W.X.2
Ding, S.W.3
-
34
-
-
0037448540
-
Systematic functional analysis of the caenorhabditis elegans genome using rnai
-
Kamath, R. S., Fraser, A. G., Dong, Y., Poulin, G., Durbin, R., Gotta, M., Kanapin, A., Bot, N. L., Moreno, S., Sohrmann, M., Welchman, D. P., Zipperlen, P. & Ahringer, J. (2003). Systematic functional analysis of the Caenorhabditis elegans genome using RNAi. Nature, 421, 231-237.
-
(2003)
Nature
, vol.421
, pp. 231-237
-
-
Kamath, R.S.1
Fraser, A.G.2
Dong, Y.3
Poulin, G.4
Durbin, R.5
Gotta, M.6
Kanapin, A.7
Bot, N.L.8
Moreno, S.9
Sohrmann, M.10
Welchman, D.P.11
Zipperlen, P.12
Ahringer, J.13
-
35
-
-
0037448528
-
Genome-wide rnai analysis of caenorhabditis elegans fat regulatory genes
-
Ashrafi, K., Chang, F. Y., Watts, J. L., Fraser, A. G., Kamath, R. S., Ahringer, J. & Ruvkun, G. (2003). Genome-wide RNAi analysis of Caenorhabditis elegans fat regulatory genes. Nature, 421, 268-272.
-
(2003)
Nature
, vol.421
, pp. 268-272
-
-
Ashrafi, K.1
Chang, F.Y.2
Watts, J.L.3
Fraser, A.G.4
Kamath, R.S.5
Ahringer, J.6
Ruvkun, G.7
-
36
-
-
0037206833
-
Thiamine derivatives bind messenger rnas directly to regulate bacterial expression
-
Winkler, W., Nahvi, A. & Breaker, R. R. (2002). Thiamine derivatives bind messenger RNAs directly to regulate bacterial expression. Nature, 419, 952-956.
-
(2002)
Nature
, vol.419
, pp. 952-956
-
-
Winkler, W.1
Nahvi, A.2
Breaker, R.R.3
-
37
-
-
0036753365
-
Genetic control by a metabolite binding mrna
-
Nahvi, A., Sudarsan, N., Ebert, M. S., Zou, X., Brown, K. L. & Breaker, R. R. (2002). Genetic control by a metabolite binding mRNA. Chem. Biol. 9, 1043-1049.
-
(2002)
Chem. Biol.
, vol.9
, pp. 1043-1049
-
-
Nahvi, A.1
Sudarsan, N.2
Ebert, M.S.3
Zou, X.4
Brown, K.L.5
Breaker, R.R.6
-
38
-
-
2442641641
-
A conformational swithc controls hepatitis delta virus ribozyme catalysis
-
Ke, A., Zhou, K., Ding, F., Cate, J. & Doudna, J. (2004). A conformational swithc controls hepatitis delta virus ribozyme catalysis. Nature, 429, 201-205.
-
(2004)
Nature
, vol.429
, pp. 201-205
-
-
Ke, A.1
Zhou, K.2
Ding, F.3
Cate, J.4
Doudna, J.5
-
39
-
-
0037206824
-
RNA gets a grip on translation
-
Szostak, J. W. (2002). RNA gets a grip on translation. Nature, 419, 890-891.
-
(2002)
Nature
, vol.419
, pp. 890-891
-
-
Szostak, J.W.1
-
40
-
-
0031181666
-
Protein folding and the paracelsus challenge
-
Rose, G. (1997). Protein folding and the Paracelsus challenge. Nature Struc. Biol. 4, 512-514.
-
(1997)
Nature Struc. Biol.
, vol.4
, pp. 512-514
-
-
Rose, G.1
-
41
-
-
0037146606
-
Small rnas make big splash
-
Couzin, J. (2002). Small RNAs make big splash. Science, 298, 2296-2297.
-
(2002)
Science
, vol.298
, pp. 2296-2297
-
-
Couzin, J.1
-
43
-
-
0037330568
-
Encapsulating streptomycin withing a small 40-mer rna
-
Tereshko, V., Skripkin, E. & Patel, D. J. (2003). Encapsulating streptomycin withing a small 40-mer RNA. Chem. Biol. 10, 175-187.
-
(2003)
Chem. Biol.
, vol.10
, pp. 175-187
-
-
Tereshko, V.1
Skripkin, E.2
Patel, D.J.3
-
44
-
-
0037325327
-
Aptameter structures: A preview into regulatory pathways?
-
Piganeau, N. & Schroeder, R. (2003). Aptameter structures: A preview into regulatory pathways? Chem. Biol, 10, 103-104.
-
(2003)
Chem. Biol
, vol.10
, pp. 103-104
-
-
Piganeau, N.1
Schroeder, R.2
-
45
-
-
0032853242
-
Vitro selection of functional nucleic acids
-
Wilson, D. & Szostak, J. (1999). in vitro selection of functional nucleic acids. Ann. Rev. Biochem. 68, 611-647.
-
(1999)
Ann. Rev. Biochem.
, vol.68
, pp. 611-647
-
-
Wilson, D.1
Szostak, J.2
-
46
-
-
0025074907
-
Vitro selection of rna molecules that bind specific ligands
-
Ellington, A. D. & Szostak, J. W. (1990). in vitro selection of RNA molecules that bind specific ligands. Nature, 346, 818-822.
-
(1990)
Nature
, vol.346
, pp. 818-822
-
-
Ellington, A.D.1
Szostak, J.W.2
-
47
-
-
0035368080
-
Artificial ribozymes and deoxyribozymes
-
Jäschke, A. (2001). Artificial ribozymes and deoxyribozymes. Curr. Opin. Struct. Biol. 11, 321-326.
-
(2001)
Curr. Opin. Struct. Biol.
, vol.11
, pp. 321-326
-
-
Jäschke, A.1
-
48
-
-
0025194307
-
Systematic evolution of ligands by exponential enrichment: Rna ligands to bacteriophage t4 dna polymerase
-
Tuerk, C. & Gold, L. (1990). Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase. Science, 249, 505-570.
-
(1990)
Science
, vol.249
, pp. 505-570
-
-
Tuerk, C.1
Gold, L.2
-
49
-
-
0037387973
-
A survey of small rna-encoding genes in escherichia coli
-
Hershberg, R., Altuvia, S. & Margalit, H. (2003). A survey of small RNA-encoding genes in Escherichia Coli. Nucl. Acids Res. 31, 1813-1820.
-
(2003)
Nucl. Acids Res.
, vol.31
, pp. 1813-1820
-
-
Hershberg, R.1
Altuvia, S.2
Margalit, H.3
-
50
-
-
0035806973
-
Computational identification of noncoding rnas in e-coli by comparative genomics
-
Rivas, E., Klein, R., Jones, T. & Eddy, S. (2001). Computational identification of noncoding RNAs in E-coli by comparative genomics. Curr. Biol. 11, 1369-1373.
-
(2001)
Curr. Biol.
, vol.11
, pp. 1369-1373
-
-
Rivas, E.1
Klein, R.2
Jones, T.3
Eddy, S.4
-
51
-
-
0035477134
-
A computational approach to identify genes for functional rnas in genomic sequences
-
Carter, R., Dubchak, I. & Holbrook, S. (2001). A computational approach to identify genes for functional RNAs in genomic sequences. Nucl. Acids Res. 29, 3928-3938.
-
(2001)
Nucl. Acids Res.
, vol.29
, pp. 3928-3938
-
-
Carter, R.1
Dubchak, I.2
Holbrook, S.3
-
52
-
-
0035890840
-
RNA motif, an rna secondary structure definition and search algorithm
-
Macke, T. J., Ecker, D. J., Gutell, R. R., Gautheret, D., Case, D. A. & Sampath, R. (2001). RNA motif, an RNA secondary structure definition and search algorithm. NAR, 29, 4724-4735.
-
(2001)
NAR
, vol.29
, pp. 4724-4735
-
-
MacKe, T.J.1
Ecker, D.J.2
Gutell, R.R.3
Gautheret, D.4
Case, D.A.5
Sampath, R.6
-
53
-
-
0037162702
-
Prediction of plant microrna targets
-
Rhoades, M., Reinhart, B. J., Lim, L. P., Burge, C. B., Bartel, B. & Bartel, D. P. (2002). Prediction of plant microRNA targets. Cell, 110, 513-520.
-
(2002)
Cell
, vol.110
, pp. 513-520
-
-
Rhoades, M.1
Reinhart, B.J.2
Lim, L.P.3
Burge, C.B.4
Bartel, B.5
Bartel, D.P.6
-
54
-
-
0035395606
-
Identification of novel small rnas using comparative genomics and microarrays
-
Wassarman, K., Repoila, F., Rosenow, C., Storz, G. & Gottesman, S. (2001). Identification of novel small RNAs using comparative genomics and microarrays. Genes Dev. 15, 1637-1651.
-
(2001)
Genes Dev.
, vol.15
, pp. 1637-1651
-
-
Wassarman, K.1
Repoila, F.2
Rosenow, C.3
Storz, G.4
Gottesman, S.5
-
56
-
-
0034995092
-
Completeness in structural genomics
-
Vitkup, D., Melamud, E., Moult, J. & Sander, C. (2001). Completeness in structural genomics. Nat. Struc. Biol. 8, 559-565.
-
(2001)
Nat. Struc. Biol.
, vol.8
, pp. 559-565
-
-
Vitkup, D.1
Melamud, E.2
Moult, J.3
Sander, C.4
-
58
-
-
0018254569
-
RNA secondary structure: A complete mathematical analysis
-
Waterman, M. & Smith, T. (1978). RNA secondary structure: A complete mathematical analysis. Math. Biosci. 42, 257-266.
-
(1978)
Math. Biosci.
, vol.42
, pp. 257-266
-
-
Waterman, M.1
Smith, T.2
-
59
-
-
0024386096
-
Tree graphs of rna secondary structures and their comparisons
-
Le, S., Nussinov, R. & Maizel, J. (1989). Tree graphs of RNA secondary structures and their comparisons. Comput. Biomed. Res. 22, 461-473.
-
(1989)
Comput. Biomed. Res.
, vol.22
, pp. 461-473
-
-
Le, S.1
Nussinov, R.2
Maizel, J.3
-
60
-
-
0029883992
-
A graph-topological approach to recognition of pattern and similarity in rna secondary structures
-
Benedetti, G. & Morosetti, S. (1996). A graph-topological approach to recognition of pattern and similarity in RNA secondary structures. Biophys. Chem. 59, 179-184.
-
(1996)
Biophys. Chem.
, vol.59
, pp. 179-184
-
-
Benedetti, G.1
Morosetti, S.2
-
61
-
-
13244289884
-
RAG: Rna-as-graphs web resource
-
Fera, D., Kim, N., Shiffeldrim, N., Zorn, J., Laserson, U., Kim, N. & Schlick, T. (2004). RAG: RNA-As-Graphs web resource. BMC Bioinformatics, 5, 88.
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 88
-
-
Fera, D.1
Kim, N.2
Shiffeldrim, N.3
Zorn, J.4
Laserson, U.5
Kim, N.6
Schlick, T.7
-
62
-
-
3042542464
-
RAG: Rna-as-graphics database-concepts, analysis, and features
-
Gan, H., Fera, D., Zorn, J., Tang, M., Shiffeldrim, N., Laserson, U., Kim, N. & Schlick, T. (2004). RAG: RNA-As-Graphics database-concepts, analysis, and features. Bioinformatics, 20, 1285-1291.
-
(2004)
Bioinformatics
, vol.20
, pp. 1285-1291
-
-
Gan, H.1
Fera, D.2
Zorn, J.3
Tang, M.4
Shiffeldrim, N.5
Laserson, U.6
Kim, N.7
Schlick, T.8
-
63
-
-
4143102873
-
Candidates for novel rna topologies
-
Kim, N., Shiffeldrim, N., Gan, H. & Schlick, T. (2004). Candidates for novel RNA topologies. J. Mol. Biol. 341, 1129-1144.
-
(2004)
J. Mol. Biol.
, vol.341
, pp. 1129-1144
-
-
Kim, N.1
Shiffeldrim, N.2
Gan, H.3
Schlick, T.4
-
64
-
-
0038606979
-
A survey of existing rnas using graph theory with implications to rna analysis and design
-
Gan, H. H., Pasquali, S. & Schlick, T. (2003). A survey of existing RNAs using graph theory with implications to RNA analysis and design. Nucl. Acids Res. 31, 2926-2943.
-
(2003)
Nucl. Acids Res.
, vol.31
, pp. 2926-2943
-
-
Gan, H.H.1
Pasquali, S.2
Schlick, T.3
-
65
-
-
0031954003
-
The parallel universe of rna folding
-
Batey, R. T. & Doudna, J. A. (1998). The parallel universe of RNA folding. Nature Struc. Biol. 5, 337-340.
-
(1998)
Nature Struc. Biol.
, vol.5
, pp. 337-340
-
-
Batey, R.T.1
Doudna, J.A.2
-
68
-
-
0030968993
-
RNA structures and folding: From conventional to new issues in structure predictions
-
Schuster, P., Stadler, P. F. & Renner, A. (1997). RNA structures and folding: From conventional to new issues in structure predictions. Curr. Opin. Struct. Biol. 7, 229-235.
-
(1997)
Curr. Opin. Struct. Biol.
, vol.7
, pp. 229-235
-
-
Schuster, P.1
Stadler, P.F.2
Renner, A.3
-
70
-
-
0042121256
-
Mfold web server for nucleic acid folding and hybridization prediction
-
Zuker, M. M. (2003). Mfold web server for nucleic acid folding and hybridization prediction. Nucl. Acids Res. 31, 3406. http://www.bioinfo.rpi.edu/ zukerm.
-
(2003)
Nucl. Acids Res.
, vol.31
, pp. 3406
-
-
Zuker, M.M.1
-
71
-
-
0025264854
-
The equilibrium partition function and base pair binding probabilities for rna secondary structure
-
McCaskill, J. (1990). The equilibrium partition function and base pair binding probabilities for RNA secondary structure. Biopolymers, 29, 1105-1119.
-
(1990)
Biopolymers
, vol.29
, pp. 1105-1119
-
-
McCaskill, J.1
-
72
-
-
0033524952
-
A dynamic programming algorithm for rna structure prediction including pesudoknots
-
Rivas, E. & Eddy, S. (1999). A dynamic programming algorithm for RNA structure prediction including pesudoknots. J. Mol. Biol. 285, 2053-2068.
-
(1999)
J. Mol. Biol.
, vol.285
, pp. 2053-2068
-
-
Rivas, E.1
Eddy, S.2
-
73
-
-
0347364655
-
Prediction and statistics of pseudoknots in rna structures using exactly clustered stochastic simulations
-
Xayaphoummine, A., Bucher, T., Thalmann, F. & Isambert, H. (2003). Prediction and statistics of pseudoknots in RNA structures using exactly clustered stochastic simulations. Proc. Natl. Acad. Sci. USA, 100, 15310-15315.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 15310-15315
-
-
Xayaphoummine, A.1
Bucher, T.2
Thalmann, F.3
Isambert, H.4
-
74
-
-
0842268067
-
A new algorithm for rna secondary structure design
-
Andronescu, M., Fejas, A., Hutter, F., Hoos, H. & Condon, A. (2004). A new algorithm for RNA secondary structure design. J. Mol. Biol. 336, 607-624.
-
(2004)
J. Mol. Biol.
, vol.336
, pp. 607-624
-
-
Andronescu, M.1
Fejas, A.2
Hutter, F.3
Hoos, H.4
Condon, A.5
-
75
-
-
0019876473
-
Optimal computer folding of large rna sequences using thermodynamics and auxiliary information
-
Zuker, M. & Stiegler, P. (1981). Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information. Nucl. Acids Res. 9, 133-148.
-
(1981)
Nucl. Acids Res.
, vol.9
, pp. 133-148
-
-
Zuker, M.1
Stiegler, P.2
-
76
-
-
0033591465
-
Expanded sequence dependence of thermodynamic parameters improves prediction of rna secondary structure
-
Mathews, D. H., Sabina, J., Zuker, M. & Turner, D. H. (1999). Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure. J. Mol. Biol. 288, 911-940.
-
(1999)
J. Mol. Biol.
, vol.288
, pp. 911-940
-
-
Mathews, D.H.1
Sabina, J.2
Zuker, M.3
Turner, D.H.4
-
77
-
-
0034603154
-
Adaptive recognition by nucleic acid aptamers
-
Hermann, T. & Patel, D. J. (2000). Adaptive recognition by nucleic acid aptamers. Science, 287, 820-825.
-
(2000)
Science
, vol.287
, pp. 820-825
-
-
Hermann, T.1
Patel, D.J.2
-
79
-
-
0032549780
-
RNA folding at millisecond intervals by synchrotron hydroxyl radical footprinting
-
Sclavi, B., Sullivan, M., Chance, M. R., Brenowitz, M. & Woodson, S. A. (1998). RNA folding at millisecond intervals by synchrotron hydroxyl radical footprinting. Science, 279, 1940-1943.
-
(1998)
Science
, vol.279
, pp. 1940-1943
-
-
Sclavi, B.1
Sullivan, M.2
Chance, M.R.3
Brenowitz, M.4
Woodson, S.A.5
-
81
-
-
0033757940
-
Structural genomics of rna
-
Structural Genomics Supplement
-
Doudna, J. A. (2000). Structural genomics of RNA. Nature Struc. Biol. 7, 954-956. (Structural Genomics Supplement).
-
(2000)
Nature Struc. Biol.
, vol.7
, pp. 954-956
-
-
Doudna, J.A.1
-
82
-
-
0037383444
-
Ribozymes: Recent advances in the development of rna tools
-
Puerta-Fernández, E., Romero-López, C., Barroso-delJesus, A. & Berzal-Herranz, A. (2003). Ribozymes: Recent advances in the development of RNA tools. FEMS Microbiol. Rev. 27 (1), 75-97.
-
(2003)
FEMS Microbiol. Rev.
, vol.27
, Issue.1
, pp. 75-97
-
-
Puerta-Fernández, E.1
Romero-López, C.2
Barroso-Deljesus, A.3
Berzal-Herranz, A.4
-
83
-
-
0037665961
-
Molecular messages
-
Szostak, J. (2003). Molecular messages. Nature, 423, 689.
-
(2003)
Nature
, vol.423
, pp. 689
-
-
Szostak, J.1
-
84
-
-
1942489258
-
Informational complexity and functional activity of rna structures
-
Carothers, J., Oestreich, S., Davis, J. & Szostak, J. (2004). Informational complexity and functional activity of RNA structures. J. Amer. Chem. Soc. 126, 5130-5137.
-
(2004)
J. Amer. Chem. Soc.
, vol.126
, pp. 5130-5137
-
-
Carothers, J.1
Oestreich, S.2
Davis, J.3
Szostak, J.4
-
85
-
-
21844467243
-
Vitro random rools are not structurally diverse: A computational analysis
-
Gevertz, J., Gan, H. & Schlick, T. (2005). in vitro random rools are not structurally diverse: A computational analysis. RNA, 11, 853-863.
-
(2005)
RNA
, vol.11
, pp. 853-863
-
-
Gevertz, J.1
Gan, H.2
Schlick, T.3
-
86
-
-
0037015034
-
Isolation of high-affinity gtp aptamers from partially structured rna libraries
-
Davis, J. H. & Szostak, J. W. (2002). Isolation of high-affinity gtp aptamers from partially structured RNA libraries. Proc. Natl. Acad. Sci. 99, 11616-11621.
-
(2002)
Proc. Natl. Acad. Sci.
, vol.99
, pp. 11616-11621
-
-
Davis, J.H.1
Szostak, J.W.2
-
87
-
-
10044222310
-
Isolation of fast purine nucleotide synthase ribozymes
-
Lau, M. W., Cadieux, K. E. & Unrau, P. J. (2004). Isolation of fast purine nucleotide synthase ribozymes. J. Amer. Chem. Soc. 126, 15686-15693.
-
(2004)
J. Amer. Chem. Soc.
, vol.126
, pp. 15686-15693
-
-
Lau, M.W.1
Cadieux, K.E.2
Unrau, P.J.3
-
88
-
-
0000105553
-
Ribozyme engineering
-
Cech, T. (1992). Ribozyme engineering. Curr. Opin. Struct. Biol. 2, 605-609.
-
(1992)
Curr. Opin. Struct. Biol.
, vol.2
, pp. 605-609
-
-
Cech, T.1
-
89
-
-
0036226352
-
Design, construction, and analysis of a novel class of self-folding rna
-
Ikawa, Y., Fukada, K., Watanabe, S., Shiraishi, S. & Inoue, T. (2002). Design, construction, and analysis of a novel class of self-folding RNA. Structure, 10, 527-534.
-
(2002)
Structure
, vol.10
, pp. 527-534
-
-
Ikawa, Y.1
Fukada, K.2
Watanabe, S.3
Shiraishi, S.4
Inoue, T.5
-
90
-
-
10844257474
-
Building programmable jigsaw puzzles with rna
-
Chworos, A., Severcan, I., Koyfman, A., Weinkam, P., Oroudjev, E., Hansma, H. & Jaeger, L. (2004). Building programmable jigsaw puzzles with RNA. Science, 306, 2068-2072.
-
(2004)
Science
, vol.306
, pp. 2068-2072
-
-
Chworos, A.1
Severcan, I.2
Koyfman, A.3
Weinkam, P.4
Oroudjev, E.5
Hansma, H.6
Jaeger, L.7
-
91
-
-
14844362993
-
Modular rna architecture revealed by computational analysis of existing pseudoknots and ribosomal rnas
-
Pasquali, S., Gan, H. & Schlick, T. (2005). Modular RNA architecture revealed by computational analysis of existing pseudoknots and ribosomal RNAs. Nucl. Acids Res. 33, 1384-1398.
-
(2005)
Nucl. Acids Res.
, vol.33
, pp. 1384-1398
-
-
Pasquali, S.1
Gan, H.2
Schlick, T.3
-
92
-
-
4544257076
-
Searching for 2d rna geometries in bacterial genomes
-
June 9-11, ACM Press
-
Laserson, U., Gan, H. & Schlick, T. (2004). Searching for 2D RNA geometries in bacterial genomes. In Proceedings of the Twentieth Annual ACM Symposium on Computational Geometry, June 9-11 pp. 373-377. ACM Press.
-
(2004)
Proceedings of the Twentieth Annual ACM Symposium on Computational Geometry
, pp. 373-377
-
-
Laserson, U.1
Gan, H.2
Schlick, T.3
-
93
-
-
84889958503
-
Exploring the connection between synthetic and natural rnas in genomes via a novel computational approach
-
New Algorithms for Macromolecular Simulation, Leicester, UK, August 2004, (Chipot, C., Elber, R., Laaksonen, A., Leimkuhler, B., Mark, A., Schlick, T., Skeel, R. D. & Schuette, C., eds), vol. 49, of Lecture Notes in Computational Science and Engineering Springer-Verlag, New York
-
Laserson, U., Gan, H. & Schlick, T. (2005). Exploring the connection between synthetic and natural RNAs in genomes via a novel computational approach. In New Algorithms for Macromolecular Simulation, Proceedings of the Fourth International Workshop on Algorithms for Macromolecular Modelling, Leicester, UK, August 2004, (Chipot, C., Elber, R., Laaksonen, A., Leimkuhler, B., Mark, A., Schlick, T., Skeel, R. D. & Schuette, C., eds), vol. 49, of Lecture Notes in Computational Science and Engineering Springer-Verlag, New York.
-
(2005)
Proceedings of the Fourth International Workshop on Algorithms for Macromolecular Modelling
-
-
Laserson, U.1
Gan, H.2
Schlick, T.3
|