Chemiluminescence resonance energy transfer biosensing platform for site-specific determination of DNA methylation and assay of DNA methyltransferase activity using exonuclease III-assisted target recycling amplification

Biosensors and Bioelectronics

Volumn 54, Issue , 2014, Pages 48-54

  Chen, Chun ^a   Li, Baoxin ^a  

^a SHAANXI NORMAL UNIVERSITY   (China)

Author keywords

Biosensing; Chemiluminescence resonance energy transfer; DNA methylation; Grapheme oxide; Target recycling amplification

Indexed keywords

ALKYLATION; CHEMILUMINESCENCE; DIAGNOSIS; DISEASES; ENERGY TRANSFER; METHYLATION; MIXTURES; PROBES; RECYCLING; RESONANCE;

BIOSENSING; BIOSENSING PLATFORMS; CHEMILUMINESCENCERESONANCE-ENERGY TRANSFERS (CRET); DNA METHYLATION; DNA METHYLTRANSFERASES; DOUBLE-STRANDED DNA (DS-DNA); RESONANCE ENERGY TRANSFER; SIGNAL AMPLIFICATIONS;

DNA;

5 AZA 2' DEOXYCYTIDINE; AZACITIDINE; BISULFITE; DNA METHYLTRANSFERASE; DOUBLE STRANDED DNA; EXODEOXYRIBONUCLEASE III; GRAPHENE OXIDE; DNA; EXODEOXYRIBONUCLEASE;

ARTICLE; BIOSENSOR; BRANCHED DNA SIGNAL AMPLIFICATION ASSAY; CHEMILUMINESCENCE RESONANCE ENERGY TRANSFER BIOSENSING PLATFORM; CHEMOLUMINESCENCE; CONTROLLED STUDY; DNA DETERMINATION; DNA HYBRIDIZATION; DNA METHYLATION; ENERGY TRANSFER; ENZYME ACTIVITY; GENE REPRESSION; HYDROGEN BOND; LIMIT OF DETECTION; OXIDATION; PROCESS OPTIMIZATION; SENSITIVITY ANALYSIS; ENZYME ASSAY; ENZYMOLOGY; ESCHERICHIA COLI; EVALUATION STUDY; GENETIC PROCEDURES; HUMAN; LUMINESCENCE; METABOLISM; PROCEDURES;

BIOSENSING TECHNIQUES; DNA; DNA METHYLATION; DNA MODIFICATION METHYLASES; ENERGY TRANSFER; ENZYME ASSAYS; ESCHERICHIA COLI; EXODEOXYRIBONUCLEASES; HUMANS; LIMIT OF DETECTION; LUMINESCENT MEASUREMENTS;

EID: 84887656975     PISSN: 09565663     EISSN: 18734235     Source Type: Journal    
DOI: 10.1016/j.bios.2013.10.050     Document Type: Article

References (53)

1. Akhavan-Tafti H., Binger D.G., Blackwood J.J., Chen Y., Creager R.S., de Silva R., Eickholt R.A., Gaibor J.E., Handley R.S., Kapsner K.P., Lopac S.K., Mazelis M.E., McLernon T.L., Mendoza J.D., Odegaard B.H., Reddy S.G., Salvati M., Schoenfelner B.A., Shapir N., Shelly K.R., Todtleben J.C., Wang G., Xie W. J. Am. Chem. Soc. 2013, 135:4191-4194.
2. Badran A.H., Furman J.L., Ma A.S., Comi T.J., Porter J.R., Ghosh I. Anal. Chem. 2011, 83:7151-7157.
3. Bailey V.J., Keeley B.P., Razavi C.R., Griffiths E., Carraway H.E., Wang T.-H. Methods 2010, 52:237-241.
4. Bi S., Zhao T., Luo B. Chem. Commun. 2012, 48:106-108.
5. Bi S., Zhao T., Luo B., Zhu J.-J. Chem. Commun. 2013, 49:6906-6908.
6. Branciamore S., Chen Z.X., Riggs A.D., Rodin S.N. Proc. Natl. Acad. Sci. U.S.A. 2010, 107:15485-15490.
7. Brueckner B., Lyko F. Trends Pharmacol. Sci. 2004, 25:551-554.
8. Cao A., Zhang C.Y. Anal. Chem. 2012, 84:6199-6205.
9. Chen C., Li B. J. Mater. Chem. B 2013, 1:2476-2481.
10. Chen H., Li H., Lin J. Anal. Chem. 2012, 84:8871-8879.
11. Cheng X., Roberts R.J. Nucleic Acids Res. 2001, 29:3784-3795.
12. Choy J.S., Wei S., Lee J.Y., Tan S., Chu S., Lee T.H. J. Am. Chem. Soc. 2010, 132:1782-1783.
13. Clark S.J., Harrison J., Paul C.L., Frommer M. Nucleic Acids Res. 1994, 22:2990-2997.
14. Dong S., Liu F., Lu C. Anal. Chem. 2013, 85:3363-3368.
15. Esteller M., Hamilton S.R., Burger P.C., Baylin S.B., Herman J.G. Cancer Res. 1999, 59:793-797.
16. Feng F., Wang H., Han L., Wang S. J. Am. Chem. Soc. 2008, 130:11338-11343.
17. Frigola J., Song J., Stirzaker C., Hinshelwood R.A., Peinado M.A., Clark S.J. Nat. Genet. 2006, 38:540-549.
18. He S., Song B., Li D., Zhu C., Qi W., Wen Y., Wang L., Song S., Fang H., Fan C. Adv. Funct. Mater. 2010, 20:453-459.
19. He Y., Cui H. J. Phys. Chem. C 2012, 116:12953-12957.
20. Herman J.G., Graff J.R., Myor̈har̈nen S., Nelkin B.D., Baylin S.B. Proc. Natl. Acad. Sci. U.S.A. 1996, 93:9821-9826.
21. Huang X., Ren J. Anal. Chem. 2012, 40:77-89.
22. Jeltsch A. Chem. Bio. Chem. 2002, 3:274-293.
23. Jones P.A. Cancer Res. 1996, 56:2463-2467.
24. Kasai H., Kawai K. Chem. Res. Toxicol. 2009, 22:984-989.
25. Kurita R., Arai K., Nakamoto K., Kato D., Niwa O. Anal. Chem. 2012, 84:1799-1803.
26. Lee J.S., Joung H.A., Kim M.G., Park C.B. ACS Nano 2012, 6:2978-2983.
27. Li J., Yan H., Wang K., Tan W., Zhou X. Anal. Chem. 2007, 79:1050-1056.
28. Li W., Wu P., Zhang H., Cai C. Anal. Chem. 2012, 84:7583-7590.
29. Li Y., Huang C., Zheng J., Qi H. Biosensors Bioelectronics 2012, 38:407-410.
30. Liu S., Wang C., Zhang C., Wang Y., Tang B. Anal. Chem. 2013, 85:2282-2288.
31. Liu T., Zhao J., Zhang D., Li G. Anal. Chem. 2010, 82:229-233.
32. Liu X.Q., Aizen R., Freeman R., Yehezkeli O., Willner I. ACS Nano 2012, 6:3553-3563.
33. Lu C.-H., Yang H.-H., Zhu C.-L., Chen X., Chen G.-N. Angew. Chem. Int. Ed. 2009, 48:4785-4787.
34. Morales-Narváez E., Merkoçi A. Adv. Mater. 2012, 24:3298-3308.
35. Morales-Narváez E., Pérez-López B., Pires L.B., Merkoçi A. Carbon 2012, 50:2987-2993.
36. Shames D.S., Minna J.D., Gazdar A.F. Curr. Mol. Medi. 2007, 7:85-102.
37. Tanaka K., Tainaka K., Kamei T., Okamoto A. J. Am. Chem. Soc. 2007, 129:5612-5620.
38. Tanaka K., Tainaka K., Umemoto T., Nomura A., Okamoto A. J. Am. Chem. Soc. 2007, 129:14511-14517.
39. Varghese N., Mogera U., Govindaraj A., Das A., Maiti P.K., Sood A.K., Rao C.N.R. Chem. Phys. Chem. 2009, 10:206-210.
40. Wang G., Zhou L., Luo H., Li N. Anal. Chim. Acta 2013, 768:76-81.
41. Wang J., Ren J. Electrophoresis 2005, 26:2402-2408.
42. Wang J., Zhu Z., Ma H. Anal. Chem. 2013, 85:2096-2101.
43. Wang P., Chen H., Tian J., Dai Z., Zou X. Biosensors Bioelectronics 2013, 45:34-39.
44. Wang Y., Li Z., Hu D., Lin C., Li J., Lin Y. J. Am. Chem. Soc. 2010, 132:9274-9276.
45. William S., Hummers J.R., Offema R.E. J. Am. Chem. Soc. 1958, 80. (1339-1339).
46. Xiong Z., Laird P.W. Nucleic Acids Res. 1997, 25:2532-2534.
47. Xu Q., Cao A., Zhang L., Zhang C. Anal. Chem. 2012, 84:10845-10851.
48. Zeng Y.-P., Hu J., Long Y., Zhang C.Y. Anal. Chem. 2013, 85:6143-6150.
49. Zhang H., Li F., Dever B., Li X.-F., Le X.C. Chem. Rev. 2013, 113:2812-2841.
50. Zhao S., Liu J., Huang Y., Liu Y. Chem. Commun. 2012, 48:699-701.
51. Zhu G., Yang K., Zhang C.Y. Biosensors Bioelectronics 2013, 49:170-175.
52. Zou B.J., Ma Y.J., Wu H.P., Zhou G.H. Angew. Chem. Int. Ed. 2011, 50:7395-7398.
53. Zuo X., Xia F., Xiao Y., Plaxco K.W. J. Am. Chem. Soc. 2010, 132:1816-1818.