Signal amplification of graphene oxide combining with restriction endonuclease for site-specific determination of DNA methylation and assay of methyltransferase activity

Analytical Chemistry

Volumn 84, Issue 17, 2012, Pages 7583-7590

  Li, Wen ^a   Wu, Ping ^a   Zhang, Hui ^a   Cai, Chenxin ^a  

^a NANJING NORMAL UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

ACTIVITY ASSAYS; ANTICANCER DRUG; DETECTION LIMITS; DNA METHYLATION; ELECTROCHEMICAL METHODS; ELECTROCHEMICAL RESPONSE; ELECTROCHEMICAL SIGNALS; ELECTRODE SURFACES; ENDONUCLEASES; GENE REPRESSION; GRAPHENE OXIDES; HOMO SAPIENS; LINEAR RELATIONSHIPS; METHYLTRANSFERASE ACTIVITY; P53 GENE; POTENTIAL APPLICATIONS; PROMOTER REGION; RESTRICTION ENDONUCLEASES; SIGNAL AMPLIFICATIONS; SITE-SPECIFIC; SYMMETRICAL SEQUENCE;

ALKYLATION; DIAGNOSIS; ELECTRODES; GENES; METHYLATION; PROBES; SIGNAL PROCESSING;

DNA;

DNA; DNA (CYTOSINE 5) METHYLTRANSFERASE; DNA MODIFICATION METHYLASE HPAII; GOLD; GRAPHITE; METAL NANOPARTICLE; OXIDE; PHENOTHIAZINE DERIVATIVE; PROTEIN P53; THIONINE;

ARTICLE; BIOCATALYSIS; CELL STRAIN HCT116; CHEMISTRY; DNA METHYLATION; DNA PROBE; ELECTROCHEMICAL ANALYSIS; ELECTRODE; GENETICS; HUMAN; METABOLISM; NUCLEOTIDE SEQUENCE;

BASE SEQUENCE; BIOCATALYSIS; DNA; DNA METHYLATION; DNA PROBES; DNA-CYTOSINE METHYLASES; ELECTROCHEMICAL TECHNIQUES; ELECTRODES; GOLD; GRAPHITE; HCT116 CELLS; HUMANS; METAL NANOPARTICLES; OXIDES; PHENOTHIAZINES; TUMOR SUPPRESSOR PROTEIN P53;

EID: 84865748402     PISSN: 00032700     EISSN: 15206882     Source Type: Journal    
DOI: 10.1021/ac301990f     Document Type: Article

References (56)

1. Lee, G. E.; Kim, J. H.; Taylor, M.; Muller, M. T. J. Biol. Chem. 2010, 285, 37630-37640
2. Liu, S.; Tu, Y.; Li, W.; Wu, P.; Zhang, H.; Cai, C. X. Chin. J. Anal. Chem. 2011, 39, 1451-1458
3. Frigola, J.; Song, J.; Stirzaker, C.; Hinshelwood, R. A.; Peinado, M. A.; Clark, S. J. Nat. Genet. 2006, 38, 540-549
4. Choy, J. S.; Wei, S.; Lee, J. Y.; Tan, S.; Chu, S.; Lee, T. H. J. Am. Chem. Soc. 2010, 132, 1782-1783
5. Scholten, S. Epigenetics 2010, 5, 455-459
6. Stains, C. I.; Furman, J. L.; Segal, D. J.; Ghosh, I. J. Am. Chem. Soc. 2006, 128, 9761-9765
7. Branciamore, S.; Chen, Z. X.; Riggs, A. D.; Rodin, S. N. Proc. Natl. Acad. Sci. U.S.A. 2010, 107, 15485-15490
8. Zhang, Z. J.; Chen, C. Q.; Manev, H. Anal. Chem. 2004, 76, 6829-6832
9. Heard, E.; Clerc, P.; Avner, P. Annu. Rev. Genet. 1997, 31, 571-610
10. Baylin, S. B.; Herman, J. G. Trends Genet. 2000, 16, 168-174
11. Chen, R. Z.; Pettersson, U.; Beard, C.; Jackson-Grusby, L.; Jaenisch, R. Nature 1998, 395, 89-93
12. Compare, D.; Rocco, A.; Liguori, E.; D'Armiento, F. P.; Persico, G.; Masone, S.; Coppola-Bottazzi, E.; Suriani, R.; Romano, M.; Nardone, G. J. Clin. Pathol. 2011, 64, 677-682
13. Terry, M. B.; Delgado-Cruzata, L.; Vin-Raviv, N.; Wu, H. C.; Santella, R. M. Epigenetics 2011, 6, 828-837
14. Kim, M.; Long, T. I.; Arakawa, K.; Wang, R.; Yu, M. C.; Laird, P. W. PLoS One 2010, 5, e9692
15. Wright, R. O.; Schwartz, J.; Wright, R. J.; Bollati, V.; Tarantini, L.; Park, S. K.; Hu, H.; Sparrow, D.; Vokonas, P.; Baccarelli, A. Environ. Health Perspect. 2010, 118, 790-795
16. Esteller, M.; Corn, P. G.; Baylin, S. B.; Herman, J. G. Cancer Res. 2001, 61, 3225-3229
17. Docherty, S. J.; Davis, O. S.; Haworth, C. M.; Plomin, R.; Mill, J. Methods 2010, 52, 255-258
18. Aichinger, E.; Kohler, C. Methods Mol. Biol. 2010, 655, 433-443
19. Oakes, C. C.; La Salle, S.; Trasler, J. M.; Robaire, B. Methods Mol. Biol. 2009, 507, 271-280
20. Bruce, S.; Hannula-Jouppi, K.; Lindgren, C. M.; Lipsanen-Nyman, M.; Kere, J. Clin. Chem. 2008, 54, 491-499
21. Blair, S.; Yu, Y. N.; Gillespie, D.; Jensen, R.; Myszka, D.; Badran, A. H.; Ghosh, I.; Chagovetz, A. Anal. Chem. 2010, 82, 5012-5019
22. Craighead, H. G.; Cipriany, B. R.; Zhao, R. Q.; Murphy, P. J.; Levy, S. L.; Tan, C. P.; Soloway, P. D. Anal. Chem. 2010, 82, 2480-2487
23. Tanaka, K.; Tainaka, K.; Umemoto, T.; Nomura, A.; Okamoto, A. J. Am. Chem. Soc. 2007, 129, 14511-14517
24. Dai, Z.; Hu, X.; Wu, H.; Zou, X. Chem. Commun. 2012, 48, 1769-1771
25. Kato, D.; Sekioka, N.; Ueda, A.; Kurita, R.; Hirono, S.; Suzuki, K.; Niwa, O. J. Am. Chem. Soc. 2008, 130, 3716-3717
26. Kato, D.; Goto, K.; Fujii, S.-I.; Takatsu, A.; Hirono, S.; Niwa, O. Anal. Chem. 2011, 83, 7595-7599
27. Liu, S.; Wu, P.; Li, W.; Zhang, H.; Cai, C. X. Chem. Commun. 2011, 47, 2844-2846
28. Lyko, F.; Ramsahoye, B. H.; Jaenisch, R. Nature 2000, 408, 538-540
29. Duan, X.; Liu, L.; Feng, F.; Wang, S. Acc. Chem. Res. 2010, 43, 260-270
30. Wang, X.; Song, Y.; Song, M.; Wang, Z.; Li, T.; Wang, H. Anal. Chem. 2009, 81, 7885-7891
31. Zhao, C.; Qu, K.; Song, Y.; Ren, J.; Qu, X. Adv. Funct. Mater. 2011, 21, 583-590
32. Song, G.; Chen, C.; Ren, J.; Qu, X. ACS Nano 2009, 3, 1183-1189
33. Liu, T.; Zhao, J.; Zhang, D.; Li, G. Anal. Chem. 2010, 82, 229-233
34. Li, W.; Liu, Z.; Lim, H.; Nie, Z.; Chen, J.; Xu, X.; Yao, S. Anal. Chem. 2010, 82, 1935-1941
35. Friso, S.; Choi, S. W.; Dolnikowski, G. G.; Selhub, J. Anal. Chem. 2002, 74, 4526-4531
36. Torres, A. L.; Barrientos, E. Y.; Wrobel, K.; Wrobel, K. Anal. Chem. 2011, 83, 7999-8005
37. Tian, T.; Wang, S. R.; Wu, J. G.; Zhou, X. Sci. China 2011, 54, 1233-1243
38. Sahin, E.; Gumuslu, S.; Erdogan, A.; Gultekin, M. Cancer Metastasis Rev. 2010, 29, 655-676
39. Lee, J.; Kim, Y.-K.; Min, D.-H. Anal. Chem. 2011, 83, 8906-8912
40. Esteller, M. Oncogene 2002, 21, 5427-5440
41. Lubin, A. A.; Plaxco, K. W. Acc. Chem. Res. 2010, 43, 496-505
42. Liu, S.; Hu, Y.; Jin, J.; Zhang, H.; Cai, C. X. Chem. Commun. 2009, 1635-1637
43. Liu, S.; Wu, P.; Li, W.; Zhang, H.; Cai, C. X. Anal. Chem. 2011, 83, 4752-4758
44. Patolsky, F.; Katz, E.; Willner, I. Angew. Chem., Int. Ed. 2002, 41, 3398-3402
45. Wang, P.; Dai, Z.; Dai, Z.; Zou, X. Chem. Commun. 2010, 46, 7781-7783
46. Quint, A.; Cedar, H. Nucleic Acids Res. 1981, 9, 633-646
47. Kovtyukhova, N. I.; Ollivier, P. J.; Martin, B. R.; Mallouk, T. E.; Chizhik, S. A.; Buzaneva, E. V.; Gorchinskiy, A. D. Chem. Mater. 1999, 11, 771
48. Hu, Y. J.; Wu, P.; Yin, Y. J.; Zhang, H.; Cai, C. X. Appl. Catal., B: Environ. 2012, 111-112, 208-217
49. Wu, X.; Hu, Y.; Jin, J.; Zhou, N.; Wu, P.; Zhang, H.; Cai, C. X. Anal. Chem. 2010, 82, 3588-3596
50. Szamocki, R.; Velichko, A.; Holzapfel, C.; Mucklich, F.; Ravaine, S.; Garrigue, P.; Sojic, N; Hempelmann, R.; Kuhn, A. Anal. Chem. 2007, 79, 533-539
51. Nigro, J. M.; Baker, S. J.; Preisinger, A. C.; Jessup, J. M.; Hostetter, R.; Cleary, K.; Bigner, S. H.; Davidson, N.; Baylin, S.; Devilee, P.; Glover, T.; Collins, F. S.; Weston, A.; Modali, R.; Harris, C. C.; Vogelstein, B. Nature 1989, 342, 705-707
52. Chen, D. X.; Wang, Q.; Jin, J.; Wu, P.; Wang, H.; Yu, S.; Zhang, H.; Cai, C. X. Anal. Chem. 2010, 82, 2448-2455
53. Meng, L.; Wu, P.; Chen, G. X.; Cai, C. X.; Sun, Y. M.; Yuan, Z. H. Biosens. Bioelectron. 2009, 24, 1751-1756
54. Fan, C.; Plaxco, L. W.; Heeger, A. J. Proc. Natl. Acad. Sci. U.S.A. 2003, 100, 9134-9137
55. Zhang, Y.; Wang, Y.; Wang, H.; Jiang, J.-H.; Shen, G.-L.; Yu, R.-Q.; Li, J.-H. Anal. Chem. 2009, 81, 1982-1987
56. Christman, J. K. Oncogene 2002, 21, 5483-5495