-
1
-
-
0026717535
-
Three-dimensional structure of the beta subunit of E coli DNA polymerase III holoenzyme: A sliding DNA clamp
-
X.P. Kong, R. Onrust, M. O'Donnell, and J. Kuriyan Three-dimensional structure of the beta subunit of E coli DNA polymerase III holoenzyme: a sliding DNA clamp Cell 69 1992 425 437
-
(1992)
Cell
, vol.69
, pp. 425-437
-
-
Kong, X.P.1
Onrust, R.2
O'Donnell, M.3
Kuriyan, J.4
-
2
-
-
0028618183
-
Crystal structure of the eukaryotic DNA polymerase processivity factor PCNA
-
T.S. Krishna, X.P. Kong, S. Gary, P.M. Burgers, and J. Kuriyan Crystal structure of the eukaryotic DNA polymerase processivity factor PCNA Cell 79 1994 1233 1243
-
(1994)
Cell
, vol.79
, pp. 1233-1243
-
-
Krishna, T.S.1
Kong, X.P.2
Gary, S.3
Burgers, P.M.4
Kuriyan, J.5
-
3
-
-
82755183582
-
The E coli clamp loader can actively pry open the beta-sliding clamp
-
C.O. Paschall, J.A. Thompson, M.R. Marzahn, A. Chiraniya, J.N. Hayner, and M. O'Donnell The E coli clamp loader can actively pry open the beta-sliding clamp J Biol Chem 286 2011 42704 42714
-
(2011)
J Biol Chem
, vol.286
, pp. 42704-42714
-
-
Paschall, C.O.1
Thompson, J.A.2
Marzahn, M.R.3
Chiraniya, A.4
Hayner, J.N.5
O'Donnell, M.6
-
4
-
-
0035943399
-
Mechanism of processivity clamp opening by the delta subunit wrench of the clamp loader complex of E coli DNA polymerase III
-
D. Jeruzalmi, O. Yurieva, Y. Zhao, M. Young, J. Stewart, and M. Hingorani Mechanism of processivity clamp opening by the delta subunit wrench of the clamp loader complex of E coli DNA polymerase III Cell 106 2001 417 428
-
(2001)
Cell
, vol.106
, pp. 417-428
-
-
Jeruzalmi, D.1
Yurieva, O.2
Zhao, Y.3
Young, M.4
Stewart, J.5
Hingorani, M.6
-
5
-
-
0035179213
-
Intricacies in ATP-dependent clamp loading: Variations across replication systems
-
M.A. Trakselis, and S.J. Benkovic Intricacies in ATP-dependent clamp loading: variations across replication systems Structure 9 2001 999 1004
-
(2001)
Structure
, vol.9
, pp. 999-1004
-
-
Trakselis, M.A.1
Benkovic, S.J.2
-
6
-
-
63549113890
-
Loading clamps for DNA replication and repair
-
L.B. Bloom Loading clamps for DNA replication and repair DNA Repair (Amst) 8 2009 570 578
-
(2009)
DNA Repair (Amst)
, vol.8
, pp. 570-578
-
-
Bloom, L.B.1
-
7
-
-
0035902595
-
Creating a dynamic picture of the sliding clamp during T4 DNA polymerase holoenzyme assembly by using fluorescence resonance energy transfer
-
M.A. Trakselis, S.C. Alley, E. Abel-Santos, and S.J. Benkovic Creating a dynamic picture of the sliding clamp during T4 DNA polymerase holoenzyme assembly by using fluorescence resonance energy transfer Proc Natl Acad Sci USA 98 2001 8368 8375
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 8368-8375
-
-
Trakselis, M.A.1
Alley, S.C.2
Abel-Santos, E.3
Benkovic, S.J.4
-
8
-
-
33745625118
-
Single-molecule investigation of the T4 bacteriophage DNA polymerase holoenzyme: Multiple pathways of holoenzyme formation
-
R.D. Smiley, Z. Zhuang, S.J. Benkovic, and G.G. Hammes Single-molecule investigation of the T4 bacteriophage DNA polymerase holoenzyme: multiple pathways of holoenzyme formation Biochemistry 45 2006 7990 7997
-
(2006)
Biochemistry
, vol.45
, pp. 7990-7997
-
-
Smiley, R.D.1
Zhuang, Z.2
Benkovic, S.J.3
Hammes, G.G.4
-
9
-
-
0037436329
-
Examination of the role of the clamp-loader and ATP hydrolysis in the formation of the bacteriophage T4 polymerase holoenzyme
-
M.A. Trakselis, A.J. Berdis, and S.J. Benkovic Examination of the role of the clamp-loader and ATP hydrolysis in the formation of the bacteriophage T4 polymerase holoenzyme J Mol Biol 326 2003 435 451
-
(2003)
J Mol Biol
, vol.326
, pp. 435-451
-
-
Trakselis, M.A.1
Berdis, A.J.2
Benkovic, S.J.3
-
10
-
-
70450265205
-
A slow ATP-induced conformational change limits the rate of DNA binding but not the rate of beta clamp binding by the Escherichia coli gamma complex clamp loader
-
J.A. Thompson, C.O. Paschall, M. O'Donnell, and L.B. Bloom A slow ATP-induced conformational change limits the rate of DNA binding but not the rate of beta clamp binding by the Escherichia coli gamma complex clamp loader J Biol Chem 284 2009 32147 32157
-
(2009)
J Biol Chem
, vol.284
, pp. 32147-32157
-
-
Thompson, J.A.1
Paschall, C.O.2
O'Donnell, M.3
Bloom, L.B.4
-
11
-
-
0034666136
-
Molecular mechanism and energetics of clamp assembly in Escherichia coli
-
J.G. Bertram, L.B. Bloom, M.M. Hingorani, J.M. Beechem, M. O'Donnell, and M.F. Goodman Molecular mechanism and energetics of clamp assembly in Escherichia coli J Biol Chem 275 2000 28413 28420
-
(2000)
J Biol Chem
, vol.275
, pp. 28413-28420
-
-
Bertram, J.G.1
Bloom, L.B.2
Hingorani, M.M.3
Beechem, J.M.4
O'Donnell, M.5
Goodman, M.F.6
-
12
-
-
84872342442
-
The beta sliding clamp closes around DNA prior to release by the Escherichia coli clamp loader gamma complex
-
J.N. Hayner, and L.B. Bloom The beta sliding clamp closes around DNA prior to release by the Escherichia coli clamp loader gamma complex J Biol Chem 288 2013 1162 1170
-
(2013)
J Biol Chem
, vol.288
, pp. 1162-1170
-
-
Hayner, J.N.1
Bloom, L.B.2
-
13
-
-
84863393472
-
Replication factor C is a more effective proliferating cell nuclear antigen (PCNA) opener than the checkpoint clamp loader, Rad24-RFC
-
J.A. Thompson, M.R. Marzahn, M. O'Donnell, and L.B. Bloom Replication factor C is a more effective proliferating cell nuclear antigen (PCNA) opener than the checkpoint clamp loader, Rad24-RFC J Biol Chem 287 2012 2203 2209
-
(2012)
J Biol Chem
, vol.287
, pp. 2203-2209
-
-
Thompson, J.A.1
Marzahn, M.R.2
O'Donnell, M.3
Bloom, L.B.4
-
14
-
-
33745187598
-
Mechanism of proliferating cell nuclear antigen clamp opening by replication factor C
-
N.Y. Yao, A. Johnson, G.D. Bowman, J. Kuriyan, and M. O'Donnell Mechanism of proliferating cell nuclear antigen clamp opening by replication factor C J Biol Chem 281 2006 17528 17539
-
(2006)
J Biol Chem
, vol.281
, pp. 17528-17539
-
-
Yao, N.Y.1
Johnson, A.2
Bowman, G.D.3
Kuriyan, J.4
O'Donnell, M.5
-
15
-
-
0035860719
-
ATP utilization by yeast replication factor C. I. ATP-mediated interaction with DNA and with proliferating cell nuclear antigen
-
X.V. Gomes, and P.M. Burgers ATP utilization by yeast replication factor C. I. ATP-mediated interaction with DNA and with proliferating cell nuclear antigen J Biol Chem 276 2001 34768 34775
-
(2001)
J Biol Chem
, vol.276
, pp. 34768-34775
-
-
Gomes, X.V.1
Burgers, P.M.2
-
16
-
-
84883212945
-
Stepwise assembly of the human replicative polymerase holoenzyme
-
M. Hedglin, S.K. Perumal, Z. Hu, and S. Benkovic Stepwise assembly of the human replicative polymerase holoenzyme Elife 2 2013 e00278
-
(2013)
Elife
, vol.2
, pp. 00278
-
-
Hedglin, M.1
Perumal, S.K.2
Hu, Z.3
Benkovic, S.4
-
17
-
-
34547730912
-
Characterization of a triple DNA polymerase replisome
-
P. McInerney, A. Johnson, F. Katz, and M. O'Donnell Characterization of a triple DNA polymerase replisome Mol Cell 27 2007 527 538
-
(2007)
Mol Cell
, vol.27
, pp. 527-538
-
-
McInerney, P.1
Johnson, A.2
Katz, F.3
O'Donnell, M.4
-
19
-
-
0032969563
-
+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes
-
+: a class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes Genome Res 9 1999 27 43
-
(1999)
Genome Res
, vol.9
, pp. 27-43
-
-
Neuwald, A.F.1
Aravind, L.2
Spouge, J.L.3
Koonin, E.V.4
-
20
-
-
0033081486
-
The internal workings of a DNA polymerase clamp-loading machine
-
J. Turner, M.M. Hingorani, Z. Kelman, and M. O'Donnell The internal workings of a DNA polymerase clamp-loading machine EMBO J 18 1999 771 783
-
(1999)
EMBO J
, vol.18
, pp. 771-783
-
-
Turner, J.1
Hingorani, M.M.2
Kelman, Z.3
O'Donnell, M.4
-
21
-
-
0032544708
-
ATP binding to the Escherichia coli clamp loader powers opening of the ring-shaped clamp of DNA polymerase III holoenzyme
-
M.M. Hingorani, and M. O'Donnell ATP binding to the Escherichia coli clamp loader powers opening of the ring-shaped clamp of DNA polymerase III holoenzyme J Biol Chem 273 1998 24550 24563
-
(1998)
J Biol Chem
, vol.273
, pp. 24550-24563
-
-
Hingorani, M.M.1
O'Donnell, M.2
-
22
-
-
0032544709
-
Pre-steady state analysis of the assembly of wild type and mutant circular clamps of Escherichia coli DNA polymerase III onto DNA
-
J.G. Bertram, L.B. Bloom, J. Turner, M. O'Donnell, J.M. Beechem, and M.F. Goodman Pre-steady state analysis of the assembly of wild type and mutant circular clamps of Escherichia coli DNA polymerase III onto DNA J Biol Chem 273 1998 24564 24574
-
(1998)
J Biol Chem
, vol.273
, pp. 24564-24574
-
-
Bertram, J.G.1
Bloom, L.B.2
Turner, J.3
O'Donnell, M.4
Beechem, J.M.5
Goodman, M.F.6
-
23
-
-
0033568602
-
Division of labor - Sequential ATP hydrolysis drives assembly of a DNA polymerase sliding clamp around DNA
-
M.M. Hingorani, L.B. Bloom, M.F. Goodman, and M. O'Donnell Division of labor - sequential ATP hydrolysis drives assembly of a DNA polymerase sliding clamp around DNA EMBO J 18 1999 5131 5144
-
(1999)
EMBO J
, vol.18
, pp. 5131-5144
-
-
Hingorani, M.M.1
Bloom, L.B.2
Goodman, M.F.3
O'Donnell, M.4
-
24
-
-
80052343292
-
Polymerase chaperoning and multiple ATPase sites enable the E coli DNA polymerase III holoenzyme to rapidly form initiation complexes
-
C.D. Downey, E. Crooke, and C.S. McHenry Polymerase chaperoning and multiple ATPase sites enable the E coli DNA polymerase III holoenzyme to rapidly form initiation complexes J Mol Biol 412 2011 340 353
-
(2011)
J Mol Biol
, vol.412
, pp. 340-353
-
-
Downey, C.D.1
Crooke, E.2
McHenry, C.S.3
-
25
-
-
0032102260
-
Clamping down on clamps and clamp loaders - The eukaryotic replication factor C
-
R. Mossi, and U. Hubscher Clamping down on clamps and clamp loaders - the eukaryotic replication factor C Eur J Biochem 254 1998 209 216
-
(1998)
Eur J Biochem
, vol.254
, pp. 209-216
-
-
Mossi, R.1
Hubscher, U.2
-
26
-
-
3042588011
-
Structural analysis of a eukaryotic sliding DNA clamp-clamp loader complex
-
G.D. Bowman, M. O'Donnell, and J. Kuriyan Structural analysis of a eukaryotic sliding DNA clamp-clamp loader complex Nature 429 2004 724 730
-
(2004)
Nature
, vol.429
, pp. 724-730
-
-
Bowman, G.D.1
O'Donnell, M.2
Kuriyan, J.3
-
27
-
-
0035943342
-
Crystal structure of the processivity clamp loader gamma complex of E coli DNA polymerase III
-
D. Jeruzalmi, M. O'Donnell, and J. Kuriyan Crystal structure of the processivity clamp loader gamma complex of E coli DNA polymerase III Cell 106 2001 429 441
-
(2001)
Cell
, vol.106
, pp. 429-441
-
-
Jeruzalmi, D.1
O'Donnell, M.2
Kuriyan, J.3
-
28
-
-
84873118328
-
The RFC clamp loader: Structure and function
-
N.Y. Yao, and M. O'Donnell The RFC clamp loader: structure and function Subcell Biochem 62 2012 259 279
-
(2012)
Subcell Biochem
, vol.62
, pp. 259-279
-
-
Yao, N.Y.1
O'Donnell, M.2
-
29
-
-
0032031972
-
PCNA binding through a conserved motif
-
E. Warbrick PCNA binding through a conserved motif BioEssays 20 1998 195 199
-
(1998)
BioEssays
, vol.20
, pp. 195-199
-
-
Warbrick, E.1
-
30
-
-
0030592544
-
Structure of the C-terminal region of p21(WAF1/CIP1) complexed with human PCNA
-
J.M. Gulbis, Z. Kelman, J. Hurwitz, M. O'Donnell, and J. Kuriyan Structure of the C-terminal region of p21(WAF1/CIP1) complexed with human PCNA Cell 87 1996 297 306
-
(1996)
Cell
, vol.87
, pp. 297-306
-
-
Gulbis, J.M.1
Kelman, Z.2
Hurwitz, J.3
O'Donnell, M.4
Kuriyan, J.5
-
31
-
-
34249066085
-
PCNA, the maestro of the replication fork
-
G.L. Moldovan, B. Pfander, and S. Jentsch PCNA, the maestro of the replication fork Cell 129 2007 665 679
-
(2007)
Cell
, vol.129
, pp. 665-679
-
-
Moldovan, G.L.1
Pfander, B.2
Jentsch, S.3
-
32
-
-
0035949599
-
A universal protein-protein interaction motif in the eubacterial DNA replication and repair systems
-
B.P. Dalrymple, K. Kongsuwan, G. Wijffels, N.E. Dixon, and P.A. Jennings A universal protein-protein interaction motif in the eubacterial DNA replication and repair systems Proc Natl Acad Sci USA 98 2001 11627 11632
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 11627-11632
-
-
Dalrymple, B.P.1
Kongsuwan, K.2
Wijffels, G.3
Dixon, N.E.4
Jennings, P.A.5
-
33
-
-
2442507194
-
Inhibition of protein interactions with the beta 2 sliding clamp of Escherichia coli DNA polymerase III by peptides from beta 2-binding proteins
-
G. Wijffels, B.P. Dalrymple, P. Prosselkov, K. Kongsuwan, V.C. Epa, and P.E. Lilley Inhibition of protein interactions with the beta 2 sliding clamp of Escherichia coli DNA polymerase III by peptides from beta 2-binding proteins Biochemistry 43 2004 5661 5671
-
(2004)
Biochemistry
, vol.43
, pp. 5661-5671
-
-
Wijffels, G.1
Dalrymple, B.P.2
Prosselkov, P.3
Kongsuwan, K.4
Epa, V.C.5
Lilley, P.E.6
-
34
-
-
0032692565
-
Building a replisome from interacting pieces: Sliding clamp complexed to a peptide from DNA polymerase and a polymerase editing complex
-
Y. Shamoo, and T.A. Steitz Building a replisome from interacting pieces: sliding clamp complexed to a peptide from DNA polymerase and a polymerase editing complex Cell 99 1999 155 166
-
(1999)
Cell
, vol.99
, pp. 155-166
-
-
Shamoo, Y.1
Steitz, T.A.2
-
35
-
-
0037251411
-
A heterotrimeric PCNA in the hyperthermophilic archaeon Sulfolobus solfataricus
-
I. Dionne, R.K. Nookala, S.P. Jackson, A.J. Doherty, and S.D. Bell A heterotrimeric PCNA in the hyperthermophilic archaeon Sulfolobus solfataricus Mol Cell 11 2003 275 282
-
(2003)
Mol Cell
, vol.11
, pp. 275-282
-
-
Dionne, I.1
Nookala, R.K.2
Jackson, S.P.3
Doherty, A.J.4
Bell, S.D.5
-
36
-
-
1942503398
-
Distinct roles for ATP binding and hydrolysis at individual subunits of an archaeal clamp loader
-
A. Seybert, and D.B. Wigley Distinct roles for ATP binding and hydrolysis at individual subunits of an archaeal clamp loader EMBO J 23 2004 1360 1371
-
(2004)
EMBO J
, vol.23
, pp. 1360-1371
-
-
Seybert, A.1
Wigley, D.B.2
-
37
-
-
0037109208
-
Biochemical characterisation of the clamp/clamp loader proteins from the euryarchaeon Archaeoglobus fulgidus
-
A. Seybert, D.J. Scott, S. Scaife, M.R. Singleton, and D.B. Wigley Biochemical characterisation of the clamp/clamp loader proteins from the euryarchaeon Archaeoglobus fulgidus Nucleic Acids Res 30 2002 4329 4338
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 4329-4338
-
-
Seybert, A.1
Scott, D.J.2
Scaife, S.3
Singleton, M.R.4
Wigley, D.B.5
-
38
-
-
25444480278
-
Open clamp structure in the clamp-loading complex visualized by electron microscopic image analysis
-
T. Miyata, H. Suzuki, T. Oyama, K. Mayanagi, Y. Ishino, and K. Morikawa Open clamp structure in the clamp-loading complex visualized by electron microscopic image analysis Proc Natl Acad Sci USA 102 2005 13795 13800
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 13795-13800
-
-
Miyata, T.1
Suzuki, H.2
Oyama, T.3
Mayanagi, K.4
Ishino, Y.5
Morikawa, K.6
-
39
-
-
3042642152
-
The clamp-loading complex for processive DNA replication
-
T. Miyata, T. Oyama, K. Mayanagi, S. Ishino, Y. Ishino, and K. Morikawa The clamp-loading complex for processive DNA replication Nat Struct Mol Biol 11 2004 632 636
-
(2004)
Nat Struct Mol Biol
, vol.11
, pp. 632-636
-
-
Miyata, T.1
Oyama, T.2
Mayanagi, K.3
Ishino, S.4
Ishino, Y.5
Morikawa, K.6
-
40
-
-
69449095740
-
Single-molecule analysis reveals that the lagging strand increases replisome processivity but slows replication fork progression
-
N.Y. Yao, R.E. Georgescu, J. Finkelstein, and M.E. O'Donnell Single-molecule analysis reveals that the lagging strand increases replisome processivity but slows replication fork progression Proc Natl Acad Sci USA 106 2009 13236 13241
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 13236-13241
-
-
Yao, N.Y.1
Georgescu, R.E.2
Finkelstein, J.3
O'Donnell, M.E.4
-
41
-
-
84869049178
-
The human lagging strand DNA polymerase delta holoenzyme is distributive
-
Z. Hu, S.K. Perumal, H. Yue, and S.J. Benkovic The human lagging strand DNA polymerase delta holoenzyme is distributive J Biol Chem 287 2012 38442 38448
-
(2012)
J Biol Chem
, vol.287
, pp. 38442-38448
-
-
Hu, Z.1
Perumal, S.K.2
Yue, H.3
Benkovic, S.J.4
-
42
-
-
63249130106
-
Polymerase dynamics at the eukaryotic DNA replication fork
-
P.M. Burgers Polymerase dynamics at the eukaryotic DNA replication fork J Biol Chem 284 2009 4041 4045
-
(2009)
J Biol Chem
, vol.284
, pp. 4041-4045
-
-
Burgers, P.M.1
-
43
-
-
57649139149
-
DNA polymerase delta is highly processive with proliferating cell nuclear antigen and undergoes collision release upon completing DNA
-
L.D. Langston, and M. O'Donnell DNA polymerase delta is highly processive with proliferating cell nuclear antigen and undergoes collision release upon completing DNA J Biol Chem 283 2008 29522 29531
-
(2008)
J Biol Chem
, vol.283
, pp. 29522-29531
-
-
Langston, L.D.1
O'Donnell, M.2
-
44
-
-
84866409927
-
Differential temperature-dependent multimeric assemblies of replication and repair polymerases on DNA increase processivity
-
H.K. Lin, S.F. Chase, T.M. Laue, L. Jen-Jacobson, and M.A. Trakselis Differential temperature-dependent multimeric assemblies of replication and repair polymerases on DNA increase processivity Biochemistry 51 2012 7367 7382
-
(2012)
Biochemistry
, vol.51
, pp. 7367-7382
-
-
Lin, H.K.1
Chase, S.F.2
Laue, T.M.3
Jen-Jacobson, L.4
Trakselis, M.A.5
-
45
-
-
0035093865
-
Biochemical analysis of replication factor C from the hyperthermophilic archaeon Pyrococcus furiosus
-
I.K. Cann, S. Ishino, M. Yuasa, H. Daiyasu, H. Toh, and Y. Ishino Biochemical analysis of replication factor C from the hyperthermophilic archaeon Pyrococcus furiosus J Bacteriol 183 2001 2614 2623
-
(2001)
J Bacteriol
, vol.183
, pp. 2614-2623
-
-
Cann, I.K.1
Ishino, S.2
Yuasa, M.3
Daiyasu, H.4
Toh, H.5
Ishino, Y.6
-
47
-
-
75349098593
-
A trimeric DNA polymerase complex increases the native replication processivity
-
A.L. Mikheikin, H.K. Lin, P. Mehta, L. Jen-Jacobson, and M.A. Trakselis A trimeric DNA polymerase complex increases the native replication processivity Nucleic Acids Res 37 2009 7194 7205
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 7194-7205
-
-
Mikheikin, A.L.1
Lin, H.K.2
Mehta, P.3
Jen-Jacobson, L.4
Trakselis, M.A.5
-
48
-
-
0028033533
-
The slow dissociation of the T4 DNA polymerase holoenzyme when stalled by nucleotide omission. An indication of a highly processive enzyme
-
K.J. Hacker, and B.M. Alberts The slow dissociation of the T4 DNA polymerase holoenzyme when stalled by nucleotide omission. An indication of a highly processive enzyme J Biol Chem 269 1994 24209 24220
-
(1994)
J Biol Chem
, vol.269
, pp. 24209-24220
-
-
Hacker, K.J.1
Alberts, B.M.2
-
49
-
-
7944222972
-
Insights into DNA replication: The crystal structure of DNA polymerase B1 from the archaeon Sulfolobus solfataricus
-
C. Savino, L. Federici, K.A. Johnson, B. Vallone, V. Nastopoulos, and M. Rossi Insights into DNA replication: the crystal structure of DNA polymerase B1 from the archaeon Sulfolobus solfataricus Structure 12 2004 2001 2008
-
(2004)
Structure
, vol.12
, pp. 2001-2008
-
-
Savino, C.1
Federici, L.2
Johnson, K.A.3
Vallone, B.4
Nastopoulos, V.5
Rossi, M.6
-
50
-
-
0035010533
-
Determination of domain structure of proteins from X-ray solution scattering
-
D.I. Svergun, M.V. Petoukhov, and M.H. Koch Determination of domain structure of proteins from X-ray solution scattering Biophys J 80 2001 2946 2953
-
(2001)
Biophys J
, vol.80
, pp. 2946-2953
-
-
Svergun, D.I.1
Petoukhov, M.V.2
Koch, M.H.3
-
51
-
-
0033001996
-
Restoring low resolution structure of biological macromolecules from solution scattering using simulated annealing
-
D.I. Svergun Restoring low resolution structure of biological macromolecules from solution scattering using simulated annealing Biophys J 76 1999 2879 2886
-
(1999)
Biophys J
, vol.76
, pp. 2879-2886
-
-
Svergun, D.I.1
-
52
-
-
0026910457
-
Determination of the regularization parameter in indirect-transform methods using perceptual criteria
-
D.I. Svergun Determination of the regularization parameter in indirect-transform methods using perceptual criteria J Appl Crystallogr 25 1992 495 503
-
(1992)
J Appl Crystallogr
, vol.25
, pp. 495-503
-
-
Svergun, D.I.1
-
53
-
-
0028357737
-
Coordination of leading and lagging strand DNA synthesis at the replication fork of bacteriophage T7
-
Z. Debyser, S. Tabor, and C.C. Richardson Coordination of leading and lagging strand DNA synthesis at the replication fork of bacteriophage T7 Cell 77 1994 157 166
-
(1994)
Cell
, vol.77
, pp. 157-166
-
-
Debyser, Z.1
Tabor, S.2
Richardson, C.C.3
-
54
-
-
0035800866
-
Conditional coupling of leading-strand and lagging-strand DNA synthesis at bacteriophage T4 replication forks
-
F.A. Kadyrov, and J.W. Drake Conditional coupling of leading-strand and lagging-strand DNA synthesis at bacteriophage T4 replication forks J Biol Chem 276 2001 29559 29566
-
(2001)
J Biol Chem
, vol.276
, pp. 29559-29566
-
-
Kadyrov, F.A.1
Drake, J.W.2
-
55
-
-
0029839057
-
Tau Couples the leading- and lagging-strand polymerases at the Escherichia coli DNA replication fork
-
S. Kim, H.G. Dallmann, C.S. McHenry, and K.J. Marians tau Couples the leading- and lagging-strand polymerases at the Escherichia coli DNA replication fork J Biol Chem 271 1996 21406 21412
-
(1996)
J Biol Chem
, vol.271
, pp. 21406-21412
-
-
Kim, S.1
Dallmann, H.G.2
McHenry, C.S.3
Marians, K.J.4
-
56
-
-
2942562192
-
The dynamic processivity of the T4 DNA polymerase during replication
-
J. Yang, Z. Zhuang, R.M. Roccasecca, M.A. Trakselis, and S.J. Benkovic The dynamic processivity of the T4 DNA polymerase during replication Proc Natl Acad Sci USA 101 2004 8289 8294
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 8289-8294
-
-
Yang, J.1
Zhuang, Z.2
Roccasecca, R.M.3
Trakselis, M.A.4
Benkovic, S.J.5
-
57
-
-
79952746781
-
Simultaneous single-molecule measurements of phage T7 replisome composition and function reveal the mechanism of polymerase exchange
-
J.J. Loparo, A.W. Kulczyk, C.C. Richardson, and A.M. van Oijen Simultaneous single-molecule measurements of phage T7 replisome composition and function reveal the mechanism of polymerase exchange Proc Natl Acad Sci USA 108 2011 3584 3589
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, pp. 3584-3589
-
-
Loparo, J.J.1
Kulczyk, A.W.2
Richardson, C.C.3
Van Oijen, A.M.4
-
58
-
-
45549085521
-
A dynamic polymerase exchange with Escherichia coli DNA polymerase IV replacing DNA polymerase III on the sliding clamp
-
A. Furukohri, M.F. Goodman, and H. Maki A dynamic polymerase exchange with Escherichia coli DNA polymerase IV replacing DNA polymerase III on the sliding clamp J Biol Chem 283 2008 11260 11269
-
(2008)
J Biol Chem
, vol.283
, pp. 11260-11269
-
-
Furukohri, A.1
Goodman, M.F.2
Maki, H.3
-
59
-
-
24944543952
-
A sliding-clamp toolbelt binds high- and low-fidelity DNA polymerases simultaneously
-
C. Indiani, P. McInerney, R. Georgescu, M.F. Goodman, and M. O'Donnell A sliding-clamp toolbelt binds high- and low-fidelity DNA polymerases simultaneously Mol Cell 19 2005 805 815
-
(2005)
Mol Cell
, vol.19
, pp. 805-815
-
-
Indiani, C.1
McInerney, P.2
Georgescu, R.3
Goodman, M.F.4
O'Donnell, M.5
-
60
-
-
0034696523
-
Tracking sliding clamp opening and closing during bacteriophage T4 DNA polymerase holoenzyme assembly
-
S.C. Alley, E. Abel-Santos, and S.J. Benkovic Tracking sliding clamp opening and closing during bacteriophage T4 DNA polymerase holoenzyme assembly Biochemistry 39 2000 3076 3090
-
(2000)
Biochemistry
, vol.39
, pp. 3076-3090
-
-
Alley, S.C.1
Abel-Santos, E.2
Benkovic, S.J.3
-
61
-
-
78650557325
-
Stepwise loading of yeast clamp revealed by ensemble and single-molecule studies
-
R. Kumar, V.C. Nashine, P.P. Mishra, S.J. Benkovic, and T.H. Lee Stepwise loading of yeast clamp revealed by ensemble and single-molecule studies Proc Natl Acad Sci USA 107 2010 19736 19741
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 19736-19741
-
-
Kumar, R.1
Nashine, V.C.2
Mishra, P.P.3
Benkovic, S.J.4
Lee, T.H.5
-
63
-
-
0035860694
-
ATP utilization by yeast replication factor C. II. Multiple stepwise ATP binding events are required to load proliferating cell nuclear antigen onto primed DNA
-
X.V. Gomes, S.L. Schmidt, and P.M. Burgers ATP utilization by yeast replication factor C. II. Multiple stepwise ATP binding events are required to load proliferating cell nuclear antigen onto primed DNA J Biol Chem 276 2001 34776 34783
-
(2001)
J Biol Chem
, vol.276
, pp. 34776-34783
-
-
Gomes, X.V.1
Schmidt, S.L.2
Burgers, P.M.3
-
64
-
-
64649100384
-
Mechanism of ATP-driven PCNA clamp loading by S cerevisiae RFC
-
S. Chen, M.K. Levin, M. Sakato, Y. Zhou, and M.M. Hingorani Mechanism of ATP-driven PCNA clamp loading by S cerevisiae RFC J Mol Biol 388 2009 431 442
-
(2009)
J Mol Biol
, vol.388
, pp. 431-442
-
-
Chen, S.1
Levin, M.K.2
Sakato, M.3
Zhou, Y.4
Hingorani, M.M.5
-
65
-
-
40549087271
-
On the mechanism of loading the PCNA sliding clamp by RFC
-
I. Dionne, N.J. Brown, R. Woodgate, and S.D. Bell On the mechanism of loading the PCNA sliding clamp by RFC Mol Microbiol 68 2008 216 222
-
(2008)
Mol Microbiol
, vol.68
, pp. 216-222
-
-
Dionne, I.1
Brown, N.J.2
Woodgate, R.3
Bell, S.D.4
-
66
-
-
70149109582
-
Temporal correlation of DNA binding, ATP hydrolysis, and clamp release in the clamp loading reaction catalyzed by the Escherichia coli gamma complex
-
S.G. Anderson, J.A. Thompson, C.O. Paschall, M. O'Donnell, and L.B. Bloom Temporal correlation of DNA binding, ATP hydrolysis, and clamp release in the clamp loading reaction catalyzed by the Escherichia coli gamma complex Biochemistry 48 2009 8516 8527
-
(2009)
Biochemistry
, vol.48
, pp. 8516-8527
-
-
Anderson, S.G.1
Thompson, J.A.2
Paschall, C.O.3
O'Donnell, M.4
Bloom, L.B.5
-
67
-
-
0030064447
-
Dual role of the 44/62 protein as a matchmaker protein and DNA polymerase chaperone during assembly of the bacteriophage T4 holoenzyme complex
-
B.F. Kaboord, and S.J. Benkovic Dual role of the 44/62 protein as a matchmaker protein and DNA polymerase chaperone during assembly of the bacteriophage T4 holoenzyme complex Biochemistry 35 1996 1084 1092
-
(1996)
Biochemistry
, vol.35
, pp. 1084-1092
-
-
Kaboord, B.F.1
Benkovic, S.J.2
-
68
-
-
58449104506
-
Structural insight into recruitment of translesion DNA polymerase Dpo4 to sliding clamp PCNA
-
G. Xing, K. Kirouac, Y.J. Shin, S.D. Bell, and H. Ling Structural insight into recruitment of translesion DNA polymerase Dpo4 to sliding clamp PCNA Mol Microbiol 71 2009 678 691
-
(2009)
Mol Microbiol
, vol.71
, pp. 678-691
-
-
Xing, G.1
Kirouac, K.2
Shin, Y.J.3
Bell, S.D.4
Ling, H.5
-
69
-
-
49749129283
-
Structures of monomeric, dimeric and trimeric PCNA: PCNA-ring assembly and opening
-
V. Hlinkova, G. Xing, J. Bauer, Y.J. Shin, I. Dionne, and K.R. Rajashankar Structures of monomeric, dimeric and trimeric PCNA: PCNA-ring assembly and opening Acta Crystallogr Sect D Biol Crystallogr 64 2008 941 949
-
(2008)
Acta Crystallogr Sect D Biol Crystallogr
, vol.64
, pp. 941-949
-
-
Hlinkova, V.1
Xing, G.2
Bauer, J.3
Shin, Y.J.4
Dionne, I.5
Rajashankar, K.R.6
-
70
-
-
33749534839
-
Structure of the heterotrimeric PCNA from Sulfolobus solfataricus
-
G.J. Williams, K. Johnson, J. Rudolf, S.A. McMahon, L. Carter, and M. Oke Structure of the heterotrimeric PCNA from Sulfolobus solfataricus Acta Crystallogr Sect F Struct Biol Cryst Commun 62 2006 944 948
-
(2006)
Acta Crystallogr Sect F Struct Biol Cryst Commun
, vol.62
, pp. 944-948
-
-
Williams, G.J.1
Johnson, K.2
Rudolf, J.3
McMahon, S.A.4
Carter, L.5
Oke, M.6
-
71
-
-
84871385554
-
Rings in the extreme: PCNA interactions and adaptations in the archaea
-
J.A. Winter, and K.A. Bunting Rings in the extreme: PCNA interactions and adaptations in the archaea Archaea 2012 2012 951010
-
(2012)
Archaea
, vol.2012
, pp. 951010
-
-
Winter, J.A.1
Bunting, K.A.2
-
72
-
-
79952164207
-
Architecture of the DNA polymerase B-proliferating cell nuclear antigen (PCNA)-DNA ternary complex
-
K. Mayanagi, S. Kiyonari, H. Nishida, M. Saito, D. Kohda, and Y. Ishino Architecture of the DNA polymerase B-proliferating cell nuclear antigen (PCNA)-DNA ternary complex Proc Natl Acad Sci USA 2011 1845 1849
-
(2011)
Proc Natl Acad Sci USA
, pp. 1845-1849
-
-
Mayanagi, K.1
Kiyonari, S.2
Nishida, H.3
Saito, M.4
Kohda, D.5
Ishino, Y.6
-
73
-
-
73949096397
-
Structural determinant for switching between the polymerase and exonuclease modes in the PCNA-replicative DNA polymerase complex
-
H. Nishida, K. Mayanagi, S. Kiyonari, Y. Sato, T. Oyama, and Y. Ishino Structural determinant for switching between the polymerase and exonuclease modes in the PCNA-replicative DNA polymerase complex Proc Natl Acad Sci USA 106 2009 20693 20698
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 20693-20698
-
-
Nishida, H.1
Mayanagi, K.2
Kiyonari, S.3
Sato, Y.4
Oyama, T.5
Ishino, Y.6
-
74
-
-
14844294424
-
Protein production by auto-induction in high density shaking cultures
-
F.W. Studier Protein production by auto-induction in high density shaking cultures Protein Expression Purif 41 2005 207 234
-
(2005)
Protein Expression Purif
, vol.41
, pp. 207-234
-
-
Studier, F.W.1
-
75
-
-
84875731470
-
Novel interaction of the bacterial-like DnaG primase with the MCM helicase in archaea
-
R.J. Bauer, B.W. Graham, and M.A. Trakselis Novel interaction of the bacterial-like DnaG primase with the MCM helicase in archaea J Mol Biol 425 2013 1259 1273
-
(2013)
J Mol Biol
, vol.425
, pp. 1259-1273
-
-
Bauer, R.J.1
Graham, B.W.2
Trakselis, M.A.3
-
76
-
-
84857853904
-
Kinetics and fidelity of polymerization by DNA polymerase III from Sulfolobus solfataricus
-
R.J. Bauer, M.T. Begley, and M.A. Trakselis Kinetics and fidelity of polymerization by DNA polymerase III from Sulfolobus solfataricus Biochemistry 51 2012 1996 2007
-
(2012)
Biochemistry
, vol.51
, pp. 1996-2007
-
-
Bauer, R.J.1
Begley, M.T.2
Trakselis, M.A.3
-
77
-
-
26944435616
-
Organization of the archaeal MCM complex on DNA and implications for the helicase mechanism
-
A.T. McGeoch, M.A. Trakselis, R.A. Laskey, and S.D. Bell Organization of the archaeal MCM complex on DNA and implications for the helicase mechanism Nat Struct Mol Biol 12 2005 756 762
-
(2005)
Nat Struct Mol Biol
, vol.12
, pp. 756-762
-
-
McGeoch, A.T.1
Trakselis, M.A.2
Laskey, R.A.3
Bell, S.D.4
-
78
-
-
0037701585
-
Uniqueness of ab initio shape determination in small-angle scattering
-
V.V. Volkov, and D.I. Svergun Uniqueness of ab initio shape determination in small-angle scattering J Appl Crystallogr 36 2003 860 864
-
(2003)
J Appl Crystallogr
, vol.36
, pp. 860-864
-
-
Volkov, V.V.1
Svergun, D.I.2
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