-
1
-
-
33745623641
-
Isolation of quiescent and nonquiescent cells from yeast stationary-phase cultures
-
Allen C, Buttner S, Aragon AD, Thomas JA, Meirelles O, et al. (2006) Isolation of quiescent and nonquiescent cells from yeast stationary-phase cultures. J Cell Biol 174 (1): 89-100.
-
(2006)
J Cell Biol
, vol.174
, Issue.1
, pp. 89-100
-
-
Allen, C.1
Buttner, S.2
Aragon, A.D.3
Thomas, J.A.4
Meirelles, O.5
-
2
-
-
79953317636
-
The proteomics of quiescent and non-quiescent cell differentiation in yeast stationary-phase cultures
-
Davidson GS, Joe RM, Roy S, Meirelles O, Allen CP, et al. (2011) The proteomics of quiescent and non-quiescent cell differentiation in yeast stationary-phase cultures. Mol Biol Cell 22 (7): 988-98.
-
(2011)
Mol Biol Cell
, vol.22
, Issue.7
, pp. 988-998
-
-
Davidson, G.S.1
Joe, R.M.2
Roy, S.3
Meirelles, O.4
Allen, C.P.5
-
3
-
-
0019187844
-
Reserve carbohydrate metabolism in Saccharomyces cerevisiae: responses to nutrient limitation
-
Lillie SH, (1980) Pringle JR, (1980) Reserve carbohydrate metabolism in Saccharomyces cerevisiae: responses to nutrient limitation. J Bacteriol 143 (3): 1384-1394.
-
(1980)
J Bacteriol
, vol.143
, Issue.3
, pp. 1384-1394
-
-
Lillie, S.H.1
Pringle, J.R.2
-
4
-
-
77953488132
-
Trehalose Is a Key Determinant of the Quiescent Metabolic State That Fuels Cell Cycle Progression upon Return to Growth
-
Shi L, Sutter BM, Ye X, (2010) Tu BP, (2010) Trehalose Is a Key Determinant of the Quiescent Metabolic State That Fuels Cell Cycle Progression upon Return to Growth. Mol Biol Cell 21: 1982-1990.
-
(2010)
Mol Biol Cell
, vol.21
, pp. 1982-1990
-
-
Shi, L.1
Sutter, B.M.2
Ye, X.3
Tu, B.P.4
-
5
-
-
0030977093
-
A novel Mcm1-dependent element in the SWI4, CLN3, CDC6, and CDC47 promoters activates M/G1-specific transcription
-
McInerny CJ, Partridge JF, Mikesell GE, Creemer DP, (1997) Breeden LL, (1997) A novel Mcm1-dependent element in the SWI4, CLN3, CDC6, and CDC47 promoters activates M/G1-specific transcription. Genes Dev 11 (10): 1277-1288.
-
(1997)
Genes Dev
, vol.11
, Issue.10
, pp. 1277-1288
-
-
McInerny, C.J.1
Partridge, J.F.2
Mikesell, G.E.3
Creemer, D.P.4
Breeden, L.L.5
-
6
-
-
0027173154
-
Comparison of the Saccharomyces cerevisiae G1 cyclins: Cln3 may be an upstream activator of Cln1, Cln2 and other cyclins
-
Tyers M, Tokiwa G, (1993) Futcher B, (1993) Comparison of the Saccharomyces cerevisiae G1 cyclins: Cln3 may be an upstream activator of Cln1, Cln2 and other cyclins. EMBO J 12: 1955-1968.
-
(1993)
EMBO J
, vol.12
, pp. 1955-1968
-
-
Tyers, M.1
Tokiwa, G.2
Futcher, B.3
-
7
-
-
2942739030
-
CDK activity antagonizes Whi5, an inhibitor of G1/S transcription in yeast
-
Costanzo M, Nishikawa JL, Tang X, Millman JS, Schub O, et al. (2004) CDK activity antagonizes Whi5, an inhibitor of G1/S transcription in yeast. Cell 117 (7): 899-913.
-
(2004)
Cell
, vol.117
, Issue.7
, pp. 899-913
-
-
Costanzo, M.1
Nishikawa, J.L.2
Tang, X.3
Millman, J.S.4
Schub, O.5
-
8
-
-
2942755857
-
Cln3 activates G1-specific transcription via phosphorylation of the SBF bound repressor Whi5
-
de Bruin RA, McDonald WH, Kalashnikova TI, Yates J, (2004) Cln3 activates G1-specific transcription via phosphorylation of the SBF bound repressor Whi5. Cell 117 (7): 887-898.
-
(2004)
Cell
, vol.117
, Issue.7
, pp. 887-898
-
-
de Bruin, R.A.1
McDonald, W.H.2
Kalashnikova, T.I.3
Yates, J.4
-
9
-
-
68249102864
-
DNA replication as a target of the DNA damage checkpoint
-
Zegerman P, (2009) Diffley JF, (2009) DNA replication as a target of the DNA damage checkpoint. DNA Repair (Amst) 8 (9): 1077-1088.
-
(2009)
DNA Repair (Amst)
, vol.8
, Issue.9
, pp. 1077-1088
-
-
Zegerman, P.1
Diffley, J.F.2
-
10
-
-
0024293556
-
The WHI1 gene of Saccharomyces cerevisiae tethers cell division to cell size and is a cyclin homolog
-
Nash R, Tokiwa G, Anand S, Erickson K, (1988) Futcher AB, (1988) The WHI1 gene of Saccharomyces cerevisiae tethers cell division to cell size and is a cyclin homolog. EMBO J 7: 4335-4346.
-
(1988)
EMBO J
, vol.7
, pp. 4335-4346
-
-
Nash, R.1
Tokiwa, G.2
Anand, S.3
Erickson, K.4
Futcher, A.B.5
-
11
-
-
0023797125
-
DAF1, a mutant gene affecting size control, pheromone arrest, and cell cycle kinetics of Saccharomyces cerevisiae
-
Cross FR, (1988) DAF1, a mutant gene affecting size control, pheromone arrest, and cell cycle kinetics of Saccharomyces cerevisiae. Mol Cell Biol 8: 4675-4684.
-
(1988)
Mol Cell Biol
, vol.8
, pp. 4675-4684
-
-
Cross, F.R.1
-
12
-
-
0030021524
-
TOR controls translation initiation and early G1 progression in yeast
-
Barbet NC, Schneider U, Helliwell SB, Stansfield I, Tuite MF, et al. (1996) TOR controls translation initiation and early G1 progression in yeast. Mol Biol Cell 7: 25-42.
-
(1996)
Mol Biol Cell
, vol.7
, pp. 25-42
-
-
Barbet, N.C.1
Schneider, U.2
Helliwell, S.B.3
Stansfield, I.4
Tuite, M.F.5
-
13
-
-
3843127604
-
Defects arising from whole-genome duplications in Saccharomyces cerevisiae
-
Andalis AA, Storchova Z, Styles C, Galitski T, Pellman D, et al. (2004) Defects arising from whole-genome duplications in Saccharomyces cerevisiae. Genetics 167 (3): 1109-1121.
-
(2004)
Genetics
, vol.167
, Issue.3
, pp. 1109-1121
-
-
Andalis, A.A.1
Storchova, Z.2
Styles, C.3
Galitski, T.4
Pellman, D.5
-
14
-
-
0030868697
-
Xbp1, a stress-induced transcriptional repressor of the saccharomyces cerevisiae Swi4/Mbp1 family
-
Mai B, (1997) Breeden L, (1997) Xbp1, a stress-induced transcriptional repressor of the saccharomyces cerevisiae Swi4/Mbp1 family. Mol Cell Biol 17 (11): 6491-6501.
-
(1997)
Mol Cell Biol
, vol.17
, Issue.11
, pp. 6491-6501
-
-
Mai, B.1
Breeden, L.2
-
15
-
-
0033961808
-
CLN1 and its repression by Xbp1 are important for efficient sporulation in budding yeast
-
Mai B, (2000) Breeden L, (2000) CLN1 and its repression by Xbp1 are important for efficient sporulation in budding yeast. Mol Cell Biol 20: 478-487.
-
(2000)
Mol Cell Biol
, vol.20
, pp. 478-487
-
-
Mai, B.1
Breeden, L.2
-
16
-
-
84864920004
-
Comparison of next-generation sequencing systems
-
Liu L, Li Y, Li S, Hu N, He Y, et al. (2012) Comparison of next-generation sequencing systems. Journal of biomedicine & biotechnology 2012: 251364.
-
(2012)
Journal of Biomedicine & Biotechnology
, vol.2012
, pp. 251364
-
-
Liu, L.1
Li, Y.2
Li, S.3
Hu, N.4
He, Y.5
-
17
-
-
0036168301
-
AZF1 is a glucose-dependent positive regulator of CLN3 transcription in Saccharomyces cerevisiae
-
Newcomb LL, Hall DD, (2002) Heideman W, (2002) AZF1 is a glucose-dependent positive regulator of CLN3 transcription in Saccharomyces cerevisiae. Mol Cell Biol 22 (5): 1607-1614.
-
(2002)
Mol Cell Biol
, vol.22
, Issue.5
, pp. 1607-1614
-
-
Newcomb, L.L.1
Hall, D.D.2
Heideman, W.3
-
18
-
-
0031720922
-
Transcriptional Regulation of CLN3 Expression by Glucose in Saccharomyces cerevisiae
-
Parviz F, Hall DD, Markwardt DD, (1998) Heideman W, (1998) Transcriptional Regulation of CLN3 Expression by Glucose in Saccharomyces cerevisiae. J Bacteriol 180: 4508-4515.
-
(1998)
J Bacteriol
, vol.180
, pp. 4508-4515
-
-
Parviz, F.1
Hall, D.D.2
Markwardt, D.D.3
Heideman, W.4
-
19
-
-
80555126851
-
Xbp1-mediated histone H4 deacetylation contributes to DNA double-strand break repair in yeast
-
Tao R, Chen H, Gao C, Xue P, Yang F, et al. (2011) Xbp1-mediated histone H4 deacetylation contributes to DNA double-strand break repair in yeast. Cell Res 1 (11): 1619-33.
-
(2011)
Cell Res
, vol.1
, Issue.11
, pp. 1619-1633
-
-
Tao, R.1
Chen, H.2
Gao, C.3
Xue, P.4
Yang, F.5
-
20
-
-
31544482407
-
Mapping pathways and phenotypes by systematic gene overexpression
-
Sopko R, Huang D, Preston N, Chua G, Papp B, et al. (2006) Mapping pathways and phenotypes by systematic gene overexpression. Mol Cell 21 (3): 319-330.
-
(2006)
Mol Cell
, vol.21
, Issue.3
, pp. 319-330
-
-
Sopko, R.1
Huang, D.2
Preston, N.3
Chua, G.4
Papp, B.5
-
21
-
-
0037107343
-
Deregulated G1-cyclin expression induces genomic instability by preventing efficient pre-RC formation
-
Tanaka S, (2002) Diffley JF, (2002) Deregulated G1-cyclin expression induces genomic instability by preventing efficient pre-RC formation. Genes Dev 16 (20): 2639-2649.
-
(2002)
Genes Dev
, vol.16
, Issue.20
, pp. 2639-2649
-
-
Tanaka, S.1
Diffley, J.F.2
-
22
-
-
0036162954
-
Precocious S-phase entry in budding yeast prolongs replicative state and increases dependence upon Rad53 for viability
-
Sidorova J, (2002) Breeden LL, (2002) Precocious S-phase entry in budding yeast prolongs replicative state and increases dependence upon Rad53 for viability. Genetics 160: 123-136.
-
(2002)
Genetics
, vol.160
, pp. 123-136
-
-
Sidorova, J.1
Breeden, L.L.2
-
23
-
-
0032956282
-
Interaction Between the MEC1-Dependent DNA synthesis Checkpoint and G1 Cyclin Function in Saccaromyces Cerevisiae
-
Vallen EA, (1999) Cross FR, (1999) Interaction Between the MEC1-Dependent DNA synthesis Checkpoint and G1 Cyclin Function in Saccaromyces Cerevisiae. Genetics 151: 459-471.
-
(1999)
Genetics
, vol.151
, pp. 459-471
-
-
Vallen, E.A.1
Cross, F.R.2
-
24
-
-
0027968012
-
The SAD1/RAD53 protein kinase controls multiple checkpoints and DNA damage-induced transcription in yeast
-
Allen JB, Zhou Z, Siede W, Friedberg EC, (1994) Elledge SJ, (1994) The SAD1/RAD53 protein kinase controls multiple checkpoints and DNA damage-induced transcription in yeast. Genes & Dev 8 (20): 2401-2415.
-
(1994)
Genes & Dev
, vol.8
, Issue.20
, pp. 2401-2415
-
-
Allen, J.B.1
Zhou, Z.2
Siede, W.3
Friedberg, E.C.4
Elledge, S.J.5
-
25
-
-
65949122940
-
A molecular mechanism of chronological aging in yeast
-
Burtner CR, Murakami CJ, Kennedy BK, (2009) Kaeberlein M, (2009) A molecular mechanism of chronological aging in yeast. Cell Cycle 8 (8): 1256-1270.
-
(2009)
Cell Cycle
, vol.8
, Issue.8
, pp. 1256-1270
-
-
Burtner, C.R.1
Murakami, C.J.2
Kennedy, B.K.3
Kaeberlein, M.4
-
26
-
-
24344435218
-
Apoptosis in budding yeast caused by defects in initiation of DNA replication
-
Weinberger M, Ramachandran L, Feng L, Sharma K, Sun X, et al. (2005) Apoptosis in budding yeast caused by defects in initiation of DNA replication. J Cell Sci 118 (Pt 15): 3543-3553.
-
(2005)
J Cell Sci
, vol.118
, Issue.Pt 15
, pp. 3543-3553
-
-
Weinberger, M.1
Ramachandran, L.2
Feng, L.3
Sharma, K.4
Sun, X.5
-
27
-
-
0345708259
-
Apoptosis-like yeast cell death in response to DNA damage and replication defects
-
Burhans WC, Weinberger M, Marchetti MA, Ramachandran L, D'Urso G, et al. (2003) Apoptosis-like yeast cell death in response to DNA damage and replication defects. Mutat Res 532 (1-2): 227-243.
-
(2003)
Mutat Res
, vol.532
, Issue.1-2
, pp. 227-243
-
-
Burhans, W.C.1
Weinberger, M.2
Marchetti, M.A.3
Ramachandran, L.4
D'Urso, G.5
-
28
-
-
0023712476
-
The RAD9 gene controls the cell cycle response to DNA damage in Saccharomyces cerevisiae
-
Weinert TA, Hartwell LH, (1988) The RAD9 gene controls the cell cycle response to DNA damage in Saccharomyces cerevisiae. Science 241 (4863): 317-322.
-
(1988)
Science
, vol.241
, Issue.4863
, pp. 317-322
-
-
Weinert, T.A.1
Hartwell, L.H.2
-
29
-
-
0032504069
-
Rad53 FHA Domain Associated with Phosphorylated Rad9 in the DNA Damage Checkpoint
-
Sun Z, Hsiao J, Fay DS, (1998) Stern DF, (1998) Rad53 FHA Domain Associated with Phosphorylated Rad9 in the DNA Damage Checkpoint. Science 281: 272-274.
-
(1998)
Science
, vol.281
, pp. 272-274
-
-
Sun, Z.1
Hsiao, J.2
Fay, D.S.3
Stern, D.F.4
-
30
-
-
0032189952
-
The Budding Yeast Rad9 Checkpoint Protein is Subjected to Mec1/Tel1-dependent hyperphosphorylation and interacts with Rad53 after DNA damage
-
Vialard JE, Gilbert CS, Green CM, (1998) Lowndes NF, (1998) The Budding Yeast Rad9 Checkpoint Protein is Subjected to Mec1/Tel1-dependent hyperphosphorylation and interacts with Rad53 after DNA damage. EMBO J 17: 5679-5688.
-
(1998)
EMBO J
, vol.17
, pp. 5679-5688
-
-
Vialard, J.E.1
Gilbert, C.S.2
Green, C.M.3
Lowndes, N.F.4
-
31
-
-
27944487902
-
Logic of the yeast metabolic cycle: temporal compartmentalization of cellular processes
-
Tu BP, Kudlicki A, Rowicka M, (2005) McKnight SL, (2005) Logic of the yeast metabolic cycle: temporal compartmentalization of cellular processes. Science 310 (5751): 1152-1158.
-
(2005)
Science
, vol.310
, Issue.5751
, pp. 1152-1158
-
-
Tu, B.P.1
Kudlicki, A.2
Rowicka, M.3
McKnight, S.L.4
-
32
-
-
35748950713
-
Exploring the functional landscape of gene expression: directed search of large microarray compendia
-
Hibbs MA, Hess DC, Myers CL, Huttenhower C, Li K, et al. (2007) Exploring the functional landscape of gene expression: directed search of large microarray compendia. Bioinformatics 23 (20): 2692-2699.
-
(2007)
Bioinformatics
, vol.23
, Issue.20
, pp. 2692-2699
-
-
Hibbs, M.A.1
Hess, D.C.2
Myers, C.L.3
Huttenhower, C.4
Li, K.5
-
33
-
-
0030853763
-
Meta-MEME: motif-based hidden Markov models of protein families
-
Grundy WN, Bailey TL, Elkan CP, (1997) Baker ME, (1997) Meta-MEME: motif-based hidden Markov models of protein families. Comput Appl Biosci 13 (4): 397-406.
-
(1997)
Comput Appl Biosci
, vol.13
, Issue.4
, pp. 397-406
-
-
Grundy, W.N.1
Bailey, T.L.2
Elkan, C.P.3
Baker, M.E.4
-
34
-
-
0041620271
-
Regulatory sequence analysis tools
-
van Helden J, (2003) Regulatory sequence analysis tools. Nucleic Acids Res 31 (13): 3593-3596.
-
(2003)
Nucleic Acids Res
, vol.31
, Issue.13
, pp. 3593-3596
-
-
van Helden, J.1
-
35
-
-
34547844064
-
SCEPTRANS: an online tool for analyzing periodic transcription in yeast
-
Kudlicki A, Rowicka M, (2007) Otwinowski Z, (2007) SCEPTRANS: an online tool for analyzing periodic transcription in yeast. Bioinformatics 23 (12): 1559-1561.
-
(2007)
Bioinformatics
, vol.23
, Issue.12
, pp. 1559-1561
-
-
Kudlicki, A.1
Rowicka, M.2
Otwinowski, Z.3
-
36
-
-
84862579952
-
Cell polarization and cytokinesis in budding yeast
-
Bi E, (2012) Park HO, (2012) Cell polarization and cytokinesis in budding yeast. Genetics 191 (2): 347-387.
-
(2012)
Genetics
, vol.191
, Issue.2
, pp. 347-387
-
-
Bi, E.1
Park, H.O.2
-
37
-
-
71049147069
-
Septins: molecular partitioning and the generation of cellular asymmetry
-
McMurray MA, (2009) Thorner J, (2009) Septins: molecular partitioning and the generation of cellular asymmetry. Cell Div 4: 18.
-
(2009)
Cell Div
, vol.4
, pp. 18
-
-
McMurray, M.A.1
Thorner, J.2
-
38
-
-
84862278321
-
Cohesin: a guardian of genome integrity
-
Mehta GD, Rizvi SM, (2012) Ghosh SK, (2012) Cohesin: a guardian of genome integrity. Biochim Biophys Acta 1823 (8): 1324-1342.
-
(2012)
Biochim Biophys Acta
, vol.1823
, Issue.8
, pp. 1324-1342
-
-
Mehta, G.D.1
Rizvi, S.M.2
Ghosh, S.K.3
-
39
-
-
0023652328
-
Cell cycle control of the yeast HO gene: cis- and trans-acting regulators
-
Breeden L, (1987) Nasmyth K, (1987) Cell cycle control of the yeast HO gene: cis- and trans-acting regulators. Cell 48: 389-397.
-
(1987)
Cell
, vol.48
, pp. 389-397
-
-
Breeden, L.1
Nasmyth, K.2
-
40
-
-
0342894696
-
NDD1, a high-dosage suppressor of cdc28-1N, is essential for expression of a subset of late-S-phase-specific genes in Saccharomyces cerevisiae
-
Loy CJ, Lydall D, (1999) Surana U, (1999) NDD1, a high-dosage suppressor of cdc28-1N, is essential for expression of a subset of late-S-phase-specific genes in Saccharomyces cerevisiae. Mol Cell Biol 19: 3312-3327.
-
(1999)
Mol Cell Biol
, vol.19
, pp. 3312-3327
-
-
Loy, C.J.1
Lydall, D.2
Surana, U.3
-
41
-
-
0031762569
-
Regulators of pseudohyphal differentiation in Saccharomyces cerevisiae identified through multicopy suppressor analysis in ammonium permease mutant strains
-
Lorenz MC, (1998) Heitman J, (1998) Regulators of pseudohyphal differentiation in Saccharomyces cerevisiae identified through multicopy suppressor analysis in ammonium permease mutant strains. Genetics 150 (4): 1443-1457.
-
(1998)
Genetics
, vol.150
, Issue.4
, pp. 1443-1457
-
-
Lorenz, M.C.1
Heitman, J.2
-
42
-
-
0025243401
-
Role of IME1 expression in regulation of meiosis in Saccharomyces cerevisiae
-
Smith HE, Su SS, Neigeborn L, Driscoll SE, (1990) Mitchell AP, (1990) Role of IME1 expression in regulation of meiosis in Saccharomyces cerevisiae. Mol Cell Biol 10 (12): 6103-6113.
-
(1990)
Mol Cell Biol
, vol.10
, Issue.12
, pp. 6103-6113
-
-
Smith, H.E.1
Su, S.S.2
Neigeborn, L.3
Driscoll, S.E.4
Mitchell, A.P.5
-
43
-
-
0035861863
-
Yeast Cbk1 and Mob2 activate daughter-specific genetic programs to induce asymmetric cell fates
-
Colman-Lerner A, Chin TE, (2001) Brent R, (2001) Yeast Cbk1 and Mob2 activate daughter-specific genetic programs to induce asymmetric cell fates. Cell 107 (6): 739-750.
-
(2001)
Cell
, vol.107
, Issue.6
, pp. 739-750
-
-
Colman-Lerner, A.1
Chin, T.E.2
Brent, R.3
-
44
-
-
84869046702
-
Architecture and Biosynthesis of the Saccharomyces cerevisiae Cell Wall
-
Orlean P, (2012) Architecture and Biosynthesis of the Saccharomyces cerevisiae Cell Wall. Genetics 192 (3): 775-818.
-
(2012)
Genetics
, vol.192
, Issue.3
, pp. 775-818
-
-
Orlean, P.1
-
45
-
-
0026445771
-
Cyclin-B homologs in Saccharomyces cerevisiae function in S phase and in G2
-
Richardson H, Lew DJ, Henze M, Sugimot K, (1992) Reed SI, (1992) Cyclin-B homologs in Saccharomyces cerevisiae function in S phase and in G2. Genes & Dev 6: 2021-2034.
-
(1992)
Genes & Dev
, vol.6
, pp. 2021-2034
-
-
Richardson, H.1
Lew, D.J.2
Henze, M.3
Sugimot, K.4
Reed, S.I.5
-
46
-
-
0031900061
-
A role for the Pcl9-Pho85 cyclin-cdk complex at the M/G1 boundary in Saccharomyces cerevisiae
-
Tennyson CN, Lee J, (1998) Andrews BJ, (1998) A role for the Pcl9-Pho85 cyclin-cdk complex at the M/G1 boundary in Saccharomyces cerevisiae. Mol Microbiol 28 (1): 69-79.
-
(1998)
Mol Microbiol
, vol.28
, Issue.1
, pp. 69-79
-
-
Tennyson, C.N.1
Lee, J.2
Andrews, B.J.3
-
47
-
-
0033229970
-
The economics of ribosome biosynthesis in yeast
-
Warner JR, (1999) The economics of ribosome biosynthesis in yeast. TIBS 24: 437-440.
-
(1999)
TIBS
, vol.24
, pp. 437-440
-
-
Warner, J.R.1
-
48
-
-
70349318536
-
Budding yeast SSD1-V regulates transcript levels of many longevity genes and extends chronological life span in purified quiescent cells
-
Li L, Lu Y, Qin LX, Bar-Joseph Z, Werner-Washburne M, et al. (2009) Budding yeast SSD1-V regulates transcript levels of many longevity genes and extends chronological life span in purified quiescent cells. Mol Biol Cell 20 (17): 3851-3864.
-
(2009)
Mol Biol Cell
, vol.20
, Issue.17
, pp. 3851-3864
-
-
Li, L.1
Lu, Y.2
Qin, L.X.3
Bar-Joseph, Z.4
Werner-Washburne, M.5
-
49
-
-
84876162526
-
The DNA damage checkpoint response to replication stress: A Game of Forks
-
Jossen R, (2013) Bermejo R, (2013) The DNA damage checkpoint response to replication stress: A Game of Forks. Frontiers in genetics 4: 26.
-
(2013)
Frontiers in Genetics
, vol.4
, pp. 26
-
-
Jossen, R.1
Bermejo, R.2
-
50
-
-
33845269825
-
Oncogene-induced senescence is a DNA damage response triggered by DNA hyper-replication
-
Di Micco R, Fumagalli M, Cicalese A, Piccinin S, Gasparini P, et al. (2006) Oncogene-induced senescence is a DNA damage response triggered by DNA hyper-replication. Nature 444 (7119): 638-642.
-
(2006)
Nature
, vol.444
, Issue.7119
, pp. 638-642
-
-
Di Micco, R.1
Fumagalli, M.2
Cicalese, A.3
Piccinin, S.4
Gasparini, P.5
-
51
-
-
33845235459
-
Oncogene-induced senescence is part of the tumorigenesis barrier imposed by DNA damage checkpoints
-
Bartkova J, Rezaei N, Liontos M, Karakaidos P, Kletsas D, et al. (2006) Oncogene-induced senescence is part of the tumorigenesis barrier imposed by DNA damage checkpoints. Nature 444 (7119): 633-637.
-
(2006)
Nature
, vol.444
, Issue.7119
, pp. 633-637
-
-
Bartkova, J.1
Rezaei, N.2
Liontos, M.3
Karakaidos, P.4
Kletsas, D.5
-
52
-
-
63549130335
-
Caspase-dependent and caspase-independent cell death pathways in yeast
-
Madeo F, Carmona-Gutierrez D, Ring J, Buttner S, Eisenberg T, et al. (2009) Caspase-dependent and caspase-independent cell death pathways in yeast. Biochem Biophys Res Commun 382 (2): 227-231.
-
(2009)
Biochem Biophys Res Commun
, vol.382
, Issue.2
, pp. 227-231
-
-
Madeo, F.1
Carmona-Gutierrez, D.2
Ring, J.3
Buttner, S.4
Eisenberg, T.5
-
53
-
-
4544352942
-
Transcriptional regulatory code of a eukaryotic genome
-
Harbison CT, Gordon DB, Lee TI, Rinaldi NJ, Macisaac KD, et al. (2004) Transcriptional regulatory code of a eukaryotic genome. Nature 431 (7004): 99-104.
-
(2004)
Nature
, vol.431
, Issue.7004
, pp. 99-104
-
-
Harbison, C.T.1
Gordon, D.B.2
Lee, T.I.3
Rinaldi, N.J.4
Macisaac, K.D.5
-
54
-
-
77955817629
-
Comprehensive reanalysis of transcription factor knockout expression data in Saccharomyces cerevisiae reveals many new targets
-
Reimand J, Vaquerizas JM, Todd AE, Vilo J, (2010) Luscombe NM, (2010) Comprehensive reanalysis of transcription factor knockout expression data in Saccharomyces cerevisiae reveals many new targets. Nucleic Acids Res 38 (14): 4768-4777.
-
(2010)
Nucleic Acids Res
, vol.38
, Issue.14
, pp. 4768-4777
-
-
Reimand, J.1
Vaquerizas, J.M.2
Todd, A.E.3
Vilo, J.4
Luscombe, N.M.5
-
55
-
-
63849315606
-
High-resolution DNA-binding specificity analysis of yeast transcription factors
-
Zhu C, Byers KJ, McCord RP, Shi Z, Berger MF, et al. (2009) High-resolution DNA-binding specificity analysis of yeast transcription factors. Genome Res 19 (4): 556-566.
-
(2009)
Genome Res
, vol.19
, Issue.4
, pp. 556-566
-
-
Zhu, C.1
Byers, K.J.2
McCord, R.P.3
Shi, Z.4
Berger, M.F.5
-
56
-
-
33747591416
-
Metabolic cycles as an underlying basis of biological oscillations
-
Tu BP, (2006) McKnight SL, (2006) Metabolic cycles as an underlying basis of biological oscillations. Nat Rev Mol Cell Biol 7 (9): 696-701.
-
(2006)
Nat Rev Mol Cell Biol
, vol.7
, Issue.9
, pp. 696-701
-
-
Tu, B.P.1
McKnight, S.L.2
-
57
-
-
36749097895
-
High-resolution timing of cell cycle-regulated gene expression
-
Rowicka M, Kudlicki A, Tu BP, (2007) Otwinowski Z, (2007) High-resolution timing of cell cycle-regulated gene expression. Proc Natl Acad Sci U S A 104 (43): 16892-16897.
-
(2007)
Proc Natl Acad Sci U S A
, vol.104
, Issue.43
, pp. 16892-16897
-
-
Rowicka, M.1
Kudlicki, A.2
Tu, B.P.3
Otwinowski, Z.4
-
58
-
-
84876891033
-
Acetyl-CoA induces transcription of the key G1 cyclin CLN3 to promote entry into the cell division cycle in Saccharomyces cerevisiae
-
Shi L, (2013) Tu BP, (2013) Acetyl-CoA induces transcription of the key G1 cyclin CLN3 to promote entry into the cell division cycle in Saccharomyces cerevisiae. Proc Natl Acad Sci U S A 110 (18): 7318-23.
-
(2013)
Proc Natl Acad Sci U S A
, vol.110
, Issue.18
, pp. 7318-7323
-
-
Shi, L.1
Tu, B.P.2
-
59
-
-
0032112293
-
A genome-wide transcriptional analysis of the mitotic cell cycle
-
Cho RJ, Campbell MJ, Winzeler EA, Steinmetz L, Conway A, et al. (1998) A genome-wide transcriptional analysis of the mitotic cell cycle. Mol Cell 2: 65-73.
-
(1998)
Mol Cell
, vol.2
, pp. 65-73
-
-
Cho, R.J.1
Campbell, M.J.2
Winzeler, E.A.3
Steinmetz, L.4
Conway, A.5
-
60
-
-
0031742022
-
Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization
-
Spellman PT, Sherlock G, Zhang MQ, Iyer VR, Anders K, et al. (1998) Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization. Mol Biol Cell 9 (12): 3273-3297.
-
(1998)
Mol Biol Cell
, vol.9
, Issue.12
, pp. 3273-3297
-
-
Spellman, P.T.1
Sherlock, G.2
Zhang, M.Q.3
Iyer, V.R.4
Anders, K.5
-
61
-
-
0036896774
-
Conserved homeodomain proteins interact with MADS box protein Mcm1 to restrict ECB-dependent transcription to the M/G1 phase of the cell cycle
-
Pramila T, Miles S, GuhaThakurta D, Jemilo D, (2002) Breeden LL, (2002) Conserved homeodomain proteins interact with MADS box protein Mcm1 to restrict ECB-dependent transcription to the M/G1 phase of the cell cycle. Genes & Dev 16: 3034-3045.
-
(2002)
Genes & Dev
, vol.16
, pp. 3034-3045
-
-
Pramila, T.1
Miles, S.2
GuhaThakurta, D.3
Jemilo, D.4
Breeden, L.L.5
-
62
-
-
77953204308
-
High-resolution transcription atlas of the mitotic cell cycle in budding yeast
-
Granovskaia MV, Jensen LJ, Ritchie ME, Toedling J, Ning Y, et al. (2010) High-resolution transcription atlas of the mitotic cell cycle in budding yeast. Genome Biol 11 (3): R24.
-
(2010)
Genome Biol
, vol.11
, Issue.3
-
-
Granovskaia, M.V.1
Jensen, L.J.2
Ritchie, M.E.3
Toedling, J.4
Ning, Y.5
-
63
-
-
80052865292
-
Glucose depletion inhibits translation initiation via eIF4A loss and subsequent 48S preinitiation complex accumulation, while the pentose phosphate pathway is coordinately up-regulated
-
Castelli LM, Lui J, Campbell SG, Rowe W, Zeef LA, et al. (2011) Glucose depletion inhibits translation initiation via eIF4A loss and subsequent 48S preinitiation complex accumulation, while the pentose phosphate pathway is coordinately up-regulated. Mol Biol Cell 22 (18): 3379-3393.
-
(2011)
Mol Biol Cell
, vol.22
, Issue.18
, pp. 3379-3393
-
-
Castelli, L.M.1
Lui, J.2
Campbell, S.G.3
Rowe, W.4
Zeef, L.A.5
-
64
-
-
18344386042
-
Cell cycle-dependent transcription in yeast: promoters, transcription factors, and transcriptomes
-
Wittenberg C, (2005) Reed SI, (2005) Cell cycle-dependent transcription in yeast: promoters, transcription factors, and transcriptomes. Oncogene 24 (17): 2746-2755.
-
(2005)
Oncogene
, vol.24
, Issue.17
, pp. 2746-2755
-
-
Wittenberg, C.1
Reed, S.I.2
-
65
-
-
0028265881
-
Induction of pseudohyphal growth by overexpression of PHD1, a Saccharomyces cerevisiae gene related to transcriptional regulators of fungal development
-
Gimeno CJ, (1994) Fink GR, (1994) Induction of pseudohyphal growth by overexpression of PHD1, a Saccharomyces cerevisiae gene related to transcriptional regulators of fungal development. Mol Cell Biol 14: 2100-2112.
-
(1994)
Mol Cell Biol
, vol.14
, pp. 2100-2112
-
-
Gimeno, C.J.1
Fink, G.R.2
-
66
-
-
0033756154
-
Sok2 regulates yeast pseudohyphal differentiation via a transcription factor cascade that regulates cell-cell adhesion
-
Pan X, (2000) Heitman J, (2000) Sok2 regulates yeast pseudohyphal differentiation via a transcription factor cascade that regulates cell-cell adhesion. Mol Cell Biol 20 (22): 8364-8372.
-
(2000)
Mol Cell Biol
, vol.20
, Issue.22
, pp. 8364-8372
-
-
Pan, X.1
Heitman, J.2
-
67
-
-
0028790841
-
SOK2 may regulate cyclic AMP-dependent protein kinase-stimulated growth and pseudohyphal development by repressing transcription
-
Ward MP, Gimeno CJ, Fink GR, (1995) Garrett S, (1995) SOK2 may regulate cyclic AMP-dependent protein kinase-stimulated growth and pseudohyphal development by repressing transcription. Mol Cell Biol 15 (12): 6854-6863.
-
(1995)
Mol Cell Biol
, vol.15
, Issue.12
, pp. 6854-6863
-
-
Ward, M.P.1
Gimeno, C.J.2
Fink, G.R.3
Garrett, S.4
-
68
-
-
0035023140
-
Xbp1-Mediated Repression of CLB Gene Expression Contributes to the Modifications of Yeast Cell Morphology and Cell Cycle See during Nitrogen-Limited Growth
-
Miled C, Mann C, (2001) Faye G, (2001) Xbp1-Mediated Repression of CLB Gene Expression Contributes to the Modifications of Yeast Cell Morphology and Cell Cycle See during Nitrogen-Limited Growth. Mol Cell Biol 21 (11): 3714-3724.
-
(2001)
Mol Cell Biol
, vol.21
, Issue.11
, pp. 3714-3724
-
-
Miled, C.1
Mann, C.2
Faye, G.3
-
69
-
-
84856117019
-
A recently evolved transcriptional network controls biofilm development in Candida albicans
-
Nobile CJ, Fox EP, Nett JE, Sorrells TR, Mitrovich QM, et al. (2012) A recently evolved transcriptional network controls biofilm development in Candida albicans. Cell 148 (1-2): 126-138.
-
(2012)
Cell
, vol.148
, Issue.1-2
, pp. 126-138
-
-
Nobile, C.J.1
Fox, E.P.2
Nett, J.E.3
Sorrells, T.R.4
Mitrovich, Q.M.5
-
70
-
-
39749162836
-
Protein-O-mannosyltransferases in virulence and development
-
Lengeler KB, Tielker D, (2008) Ernst JF, (2008) Protein-O-mannosyltransferases in virulence and development. Cell Mol Life Sci 65 (4): 528-544.
-
(2008)
Cell Mol Life Sci
, vol.65
, Issue.4
, pp. 528-544
-
-
Lengeler, K.B.1
Tielker, D.2
Ernst, J.F.3
-
71
-
-
84862282130
-
Disruption of the ECM33 gene in Candida albicans prevents biofilm formation, engineered human oral mucosa tissue damage and gingival cell necrosis/apoptosis
-
Rouabhia M, Semlali A, Chandra J, Mukherjee P, Chmielewski W, et al. (2012) Disruption of the ECM33 gene in Candida albicans prevents biofilm formation, engineered human oral mucosa tissue damage and gingival cell necrosis/apoptosis. Mediators of inflammation 2012: 398207.
-
(2012)
Mediators of Inflammation
, vol.2012
, pp. 398207
-
-
Rouabhia, M.1
Semlali, A.2
Chandra, J.3
Mukherjee, P.4
Chmielewski, W.5
-
72
-
-
82555161649
-
Interface of Candida albicans biofilm matrix-associated drug resistance and cell wall integrity regulation
-
Nett JE, Sanchez H, Cain MT, Ross KM, (2011) Andes DR, (2011) Interface of Candida albicans biofilm matrix-associated drug resistance and cell wall integrity regulation. Eukaryot Cell 10 (12): 1660-1669.
-
(2011)
Eukaryot Cell
, vol.10
, Issue.12
, pp. 1660-1669
-
-
Nett, J.E.1
Sanchez, H.2
Cain, M.T.3
Ross, K.M.4
Andes, D.R.5
-
73
-
-
0024669291
-
A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae
-
Sikorski RS, (1989) Hieter P, (1989) A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae. Genetics 122: 19-27.
-
(1989)
Genetics
, vol.122
, pp. 19-27
-
-
Sikorski, R.S.1
Hieter, P.2
-
74
-
-
0031820288
-
Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cervisiae
-
Longtine MS, McKenzie A III, Demarini DJ, Shah NG, Wach A, et al. (1998) Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cervisiae. Yeast 14: 953-961.
-
(1998)
Yeast
, vol.14
, pp. 953-961
-
-
Longtine, M.S.1
McKenzie III, A.2
Demarini, D.J.3
Shah, N.G.4
Wach, A.5
-
75
-
-
65449136284
-
TopHat: discovering splice junctions with RNA-Seq
-
Trapnell C, Pachter L, (2009) Salzberg SL, (2009) TopHat: discovering splice junctions with RNA-Seq. Bioinformatics 25 (9): 1105-1111.
-
(2009)
Bioinformatics
, vol.25
, Issue.9
, pp. 1105-1111
-
-
Trapnell, C.1
Pachter, L.2
Salzberg, S.L.3
-
76
-
-
77958471357
-
Differential expression analysis for sequence count data
-
Anders S, (2010) Huber W, (2010) Differential expression analysis for sequence count data. Genome Biol 11 (10): R106.
-
(2010)
Genome Biol
, vol.11
, Issue.10
-
-
Anders, S.1
Huber, W.2
-
77
-
-
0032828715
-
A generic protein purification method for protein complex characterization and proteome exploration
-
Rigaut G, Shevchenko A, Rutz B, Wilm M, Mann M, et al. (1999) A generic protein purification method for protein complex characterization and proteome exploration. Nat Biotechnol 17: 1030-1032.
-
(1999)
Nat Biotechnol
, vol.17
, pp. 1030-1032
-
-
Rigaut, G.1
Shevchenko, A.2
Rutz, B.3
Wilm, M.4
Mann, M.5
-
78
-
-
33644806381
-
Chromatin immunoprecipitation to study protein-DNA interactions in budding yeast
-
Ezhkova E, (2006) Tansey WP, (2006) Chromatin immunoprecipitation to study protein-DNA interactions in budding yeast. Methods Mol Biol 313: 225-244.
-
(2006)
Methods Mol Biol
, vol.313
, pp. 225-244
-
-
Ezhkova, E.1
Tansey, W.P.2
|