Genomic analysis of extra-intestinal pathogenic Escherichia coli urosepsis

Clinical Microbiology and Infection

Volumn 19, Issue 8, 2013, Pages

  Mcnally, A ^a   Alhashash, F ^a   Collins, M ^b   Alqasim, A ^a   Paszckiewicz, K ^c   Weston, V ^a,d   Diggle, M ^d  

^a NOTTINGHAM TRENT UNIVERSITY   (United Kingdom)

^b CHESTERFIELD ROYAL HOSPITAL NHS FOUNDATION TRUST   (United Kingdom)

^c UNIVERSITY OF EXETER   (United Kingdom)

^d NOTTINGHAM UNIVERSITY HOSPITALS NHS TRUST   (United Kingdom)

Author keywords

E. coli; Escherichia coli; Extra intestinal pathogenic; Genomics; Urosepsis; Virulence

Indexed keywords

ADULT; AGED; ARTICLE; BACTERIAL GENOME; BACTERIAL VIRULENCE; BLOOD; CLINICAL ARTICLE; ESCHERICHIA COLI; ESCHERICHIA COLI INFECTION; FEMALE; GENE SEQUENCE; GENETIC ASSOCIATION; HUMAN; MALE; PRIORITY JOURNAL; URINE; UROSEPSIS;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI;

EID: 84880507204     PISSN: 1198743X     EISSN: 14690691     Source Type: Journal    
DOI: 10.1111/1469-0691.12202     Document Type: Article

References (27)

1. Rogers BA, Sidjabat HE, Paterson DL. Escherichia coli O25b-ST131: a pandemic, multiresistant, community-associated strain. J Antimicrob Chemother 2011; 66: 1-14.
2. Melekos MD, Naber KG. Complicated urinary tract infections. Int J Antimicrob Agents 2000; 15: 247-256.
3. Tal S, Guller V, Levi S et al. Profile and prognosis of febrile elderly patients with bacteremic urinary tract infection. J Infect 2005; 50: 296-305.
4. Lane MC, Lockatell V, Monterosso G et al. Role of motility in the colonization of uropathogenic Escherichia coli in the urinary tract. Infect Immun 2005; 73: 7644-7656.
5. Anderson GG, Palermo JJ, Schilling JD, Roth R, Heuser J, Hultgren SJ. Intracellular bacterial biofilm-like pods in urinary tract infections. Science 2003; 301: 105-107.
6. Chen SL, Hung CS, Xu J et al. Identification of genes subject to positive selection in uropathogenic strains of Escherichia coli: a comparative genomics approach. Proc Natl Acad Sci USA 2006; 103: 5977-5982.
7. Wright KJ, Seed PC, Hultgren SJ. Development of intracellular bacterial communities of uropathogenic Escherichia coli depends on type 1 pili. Cell Microbiol 2007; 9: 2230-2241.
8. Justice SS, Hunstad DA, Seed PC, Hultgren SJ. Filamentation by Escherichia coli subverts innate defenses during urinary tract infection. Proc Natl Acad Sci USA 2006; 103: 19884-19889.
9. Mobley HLT, Jarvis KG, Elwood JP et al. Isogenic P-fimbrial deletion mutants of pyelonephritogenic Escherichia coli: the role of aGal(1-4)BGal binding in virulence of a wild-type strain. Mol Microbiol 1993; 10: 143-155.
10. Wirth T, Falush D, Lan R et al. Sex and virulence in Escherichia coli: an evolutionary perspective. Mol Microbiol 2006; 60: 1136-1151.
11. Peirano G, Pitout JDD. Molecular epidemiology of Escherichia coli producing CTX-M β-lactamases: the worldwide emergence of clone ST131 O25:H4. Int J Antimicrob Agents 2010; 35: 316-321.
12. Li R, Yu C, Li Y et al. SOAP2: an improved ultrafast tool for short read alignment. Bioinformatics 2009; 25: 1966-1967.
13. Levert M, Zamfir O, Clermont O et al. Molecular and evolutionary bases of within-patient genotypic and phenotypic diversity in Escherichia coli extraintestinal infections. PLoS Pathog 2010; 6: e1001125.
14. Rasko DA, Rosovitz MJ, Myers GSA et al. The pangenome structure of Escherichia coli: comparative genomic analysis of E. coli commensal and pathogenic isolates. J Bacteriol 2008; 190: 6881-6893.
15. Avasthi TS, Kumar N, Baddam R et al. Genome of multidrug-resistant uropathogenic Escherichia coli strain NA114 from india. J Bacteriol 2011; 193: 4272-4273.
16. Smith SN, Hagan EC, Chelsea LM, Mobley HLT. Dissemination and systemic colonization of uropathogenic Escherichia coli in a murine model of bacteremia. MBio 2010; 1: e00262-10.
17. Martinez JJ, Mulvey MA, Schilling JD, Pinkner JS, Hultgren SJ. Type 1 pilus-mediated bacterial invasion of bladder epithelial cells. EMBO J 2000; 19: 2803-2812.
18. Rosen DA, Hooton TM, Stamm WE, Humphrey PA, Hultgren SJ. Detection of intracellular bacterial communities in human urinary tract infection. PLoS Med 2007; 4: 1949-1958.
19. Croucher NJ, Harris SR, Fraser C et al. Rapid pneumococcal evolution in response to clinical interventions. Science 2011; 331: 430-434.
20. Harris SR, Clarke IN, Seth-Smith HM et al. Whole-genome analysis of diverse Chlamydia trachomatis strains identifies phylogenetic relationships masked by current clinical typing. Nat Genet 2012; 44: 413-419.
21. McAdam PR, Templeton KE, Edwards GF et al. Molecular tracing of the emergence, adaptation, and transmission of hospital-associated methicillin-resistant Staphylococcus aureus. Proc Natl Acad Sci USA 2012; 109: 9107-9112.
22. Köser CU, Holden MT, Ellington MJ et al. Rapid whole-genome sequencing for investigation of a neonatal MRSA outbreak. N Engl J Med 2012; 366: 2267-2275.
23. Zdziarski J, Brzuszkiewicz E, Wullt B et al. Host imprints on bacterial Genomes-Rapid, divergent evolution in individual patients. PLoS Pathog 2010; 6: e1001078.
24. Masuda H, Tan Q, Awano N, Wu KP, Inouye M. YeeU enhances the bundling of cytoskeletal polymers of MreB and FtsZ, antagonizing the CbtA (YeeV) toxicity in Escherichia coli. Mol Microbiol 2012; 84: 979-989.
25. Tan Q, Awano N, Inouye M. YeeV is an Escherichia coli toxin that inhibits cell division by targeting the cytoskeleton proteins, FtsZ and MreB. Mol Microbiol 2011; 79: 109-118.
26. Barrick JE, Yu DS, Yoon SH et al. Genome evolution and adaptation in a long-term experiment with Escherichia coli. Nature 2009; 461: 1243-1249.
27. Staples M, Graham RM, Doyle CJ, Smith HV, Jennison AV. Prolonged and mixed non-O157 Escherichia coli infection in an Australian household. Clin Microbiol Infect 2012; 18: E140-E143.