Radioactive chernobyl environment has produced high-oil flax seeds that show proteome alterations related to carbon metabolism during seed development

Journal of Proteome Research

Volumn 12, Issue 11, 2013, Pages 4799-4806

  Klubicová, Katarína ^a   Danchenko, Maksym ^a,b   Skultety, Ludovit ^a,c,d   Berezhna, Valentyna V ^b   Rashydov, Namik M ^b   Hajduch, Martin ^a,c  

^a INSTITUTE OF CHEMISTRY   (Slovakia)

^b INSTITUTE OF CELL BIOLOGY AND GENETIC ENGINEERING   (Ukraine)

^c INSTITUTE OF VIROLOGY   (Slovakia)

^d INSTITUTE OF MICROBIOLOGY   (Czech Republic)

Author keywords

abiotic stress; development; fatty acids; flax; radioactivity; seed; two dimensional electrophoresis

Indexed keywords

3 OXOACYL ACYL CARRIER PROTEIN SYNTHASE; ACETALDEHYDE; CARBON; CARBOXYLASE; CESIUM 137; CHLOROPLAST PROTEIN; ISOCITRIC ACID; LINSEED OIL; MALIC ACID; OXYGENASE; PROTEOME; PYRUVIC ACID; STRONTIUM 90;

ALCOHOL OXIDATION; ARTICLE; CARBON FIXATION; CARBON METABOLISM; CELLULAR DISTRIBUTION; CHERNOBYL ACCIDENT; CONTROLLED STUDY; DECARBOXYLATION; ENVIRONMENTAL RADIOACTIVITY; EVOLUTIONARY ADAPTATION; FATTY ACID SYNTHESIS; GLYCOLYSIS; GROWING SEASON; HARVEST PERIOD; LINSEED; MATURITY; NONHUMAN; OXIDATIVE DEHYDROGENATION; PLANT GROWTH; PLANT SEED; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN POLYMORPHISM; PROTEOMICS; RADIOACTIVE CONTAMINATION; RADIOACTIVE POLLUTION; SEED DEVELOPMENT; SOYBEAN; STRUCTURAL PROTEOMICS; TANDEM MASS SPECTROMETRY; TWO DIMENSIONAL GEL ELECTROPHORESIS;

ADAPTATION, BIOLOGICAL; CARBON; CESIUM RADIOISOTOPES; CHERNOBYL NUCLEAR ACCIDENT; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; FLAX; GENE EXPRESSION REGULATION, PLANT; GLYCOLYSIS; LINSEED OIL; MODELS, BIOLOGICAL; PROTEOME; PYRUVIC ACID; SEEDS; SOIL; STRONTIUM RADIOISOTOPES; TANDEM MASS SPECTROMETRY; UKRAINE;

EID: 84887225989     PISSN: 15353893     EISSN: 15353907     Source Type: Journal    
DOI: 10.1021/pr400528m     Document Type: Article

References (46)

1. Klubicová, K.; Vesel, M.; Rashydov, N. M.; Hajduch, M. Seeds in Chernobyl: the database on proteome response on radioactive environment Front. Plant Sci. 2012, 3, 231
2. Danchenko, M.; Skultety, L.; Rashydov, N.; Berezhna, V.; Matel, L.; Salaj, T.; Pretova, A.; Hajduch, M. Proteomic Analysis of Mature Soybean Seeds from the Chernobyl Area Suggests Plant Adaptation to the Contaminated Environment J. Proteome Res. 2009, 8, 2915-2922
3. Klubicová, K.; Danchenko, M.; Skultety, L.; Berezhna, V. V.; Uvačková, L.; Rashydov, N. M.; Hajduch, M. Soybeans grown in the Chernobyl area produce fertile seeds that have increased heavy metal resistance and modified carbon metabolism PLoS One 2012, 7, e48169
4. Klubicová, K.; Danchenko, M.; Skultety, L.; Miernyk, J. A.; Rashydov, N. M.; Berezhna, V. V.; Pret'ová, A.; Hajduch, M. Proteomics Analysis of Flax Grown in Chernobyl Area Suggests Limited Effect of Contaminated Environment on Seed Proteome Environ. Sci. Technol. 2010, 44, 6940-6946
5. Morris, D. Flax: A Health and Nutrition Primer; Flax Council of Canada: Winnipeg, Canada, 2003, p 11. http://www.flaxcouncil.ca/english/index.jsp?p= g1&mp=nutrition and http://www.flaxcouncil.ca/english/index.jsp?p= industrial1&mp=industrial.
6. Fenart, S.; Ndong, Y. P.; Duarte, J.; Rivière, N.; Wilmer, J.; van Wuytswinkel, O.; Lucau, A.; Cariou, E.; Neutelings, G.; Gutierrez, L.; Chabbert, B.; Guillot, X.; Tavernier, R.; Hawkins, S.; Thomasset, B. Development and validation of a flax (Linum usitatissimum L.) gene expression oligo microarray BMC Genomics 2010, 11, 592
7. Wang, Z.; Hobson, N.; Galindo, L.; Zhu, S.; Shi, D.; McDill, J.; Yang, L.; Hawkins, S.; Neutelings, G.; Datla, R.; Lambert, G.; Galbraith, D. W.; Grassa, C. J.; Geraldes, A.; Cronk, Q. C.; Cullis, C.; Dash, P. K.; Kumar, P. A.; Cloutier, S.; Sharpe, A. G.; Wong, G. K.-S.; Wang, J.; Deyholos, M. K.. The genome of flax (Linum usitatissimum) assembled de novo from short shotgun sequence reads Plant J. 2012, 72, 461-473
8. Venglat, P.; Xiang, D.; Qiu, S.; Stone, S. L.; Tibiche, C.; Cram, D.; Alting-Mees, M.; Nowak, J.; Cloutier, S.; Deyholos, M.; Bekkaoui, F.; Sharpe, A.; Wang, E.; Rowland, G.; Selvaraj, G.; Datla, R. Gene expression analysis of flax seed development BMC Plant Biol. 2011, 11, 74
9. Gutierrez, L.; Conejero, G.; Castelain, M.; Guénin, S.; Verdeil, J. L.; Thomasset, B.; van Wuytswinkel, O. Identification of new gene expression regulators specifically expressed during plant seed maturation J. Exp. Bot. 2006, 57, 1919-1932
10. Barvkar, V. T.; Pardeshi, V. C.; Kale, S. M.; Kadoo, N. Y.; Giri, A. P.; Gupta, V. S. Proteome profiling of flax (Linum usitatissimum) seed: Characterization of functional metabolic pathways operating during seed development J. Proteome Res. 2012, 11, 6264-76
11. Klubicová, K.; Berčák, M.; Danchenko, M.; Skultety, L.; Rashydov, N. M.; Berezhna, V. V.; Miernyk, J. A.; Hajduch, M. Agricultural recovery of a formerly radioactive area: I. Establishment of high-resolution quantitative protein map of mature flax seeds harvested from the remediated Chernobyl area Phytochemistry 2011, 72, 1308-15
12. Klubicova, K.; Danchenko, M.; Skultety, L.; Berezhna, V. V.; Hricova, A.; Rashydov, N. M.; Hajduch, M. Agricultural recovery of a formerly radioactive area: II. Systematic proteomic characterization of flax seed development in the remediated Chernobyl area J Proteomics 2011, 74, 1378-84
13. 90Sr; plutonium and americium isotopes in environmental samples J. Radioanal. Nucl. Chem. 2005, 263, 307-310
14. Akbar, E.; Yaakob, Z.; Kamarudin, S.; Ismail, M. Characteristics and composition of Jatropha curcas oil seed from Malaysia and its potential as biodiesel feedstock Eur. J. Scientific Res. 2009, 29, 396-403
15. Hurkman, W. J.; Tanaka, C. K. Solubilization of plant membrane proteins for analysis by two-dimensional gel electrophoresis Plant Physiol. 1986, 81, 802-806
16. Plumb, R. S.; Johnson, K. A.; Rainville, P.; Smith, B. W.; Wilson, I. D.; Castro-Perez, J. M.; Nicholson, J. K. UPLC/MS(E) a new approach for generating molecular fragment information for biomarker structure elucidation Rapid Commun. Mass Spectrom. 2006, 20, 1989-1994
17. Bevan, M.; Bancroft, I.; Bent, E.; Love, K.; Goodman, H.; Dean, C.; Bergkamp, R.; Dirkse, W.; Van Staveren, M.; Stiekema, W. Analysis of 19 Mb of contiguous sequence from chromosome 4 of Arabidopsis thaliana Nature 1998, 391, 485-488
18. Miernyk, J. A.; Pret'ová, A.; Olmedilla, A.; Klubicová, K.; Obert, B.; Hajduch, M. Using proteomics to study sexual reproduction in angiosperms Sex. Plant Reprod. 2011, 24, 9-2
19. Hajduch, M.; Ganapathy, A.; Stein, J. W.; Thelen, J. J. Systematic proteomic study of seed filling in soybean. Establishment of high-resolution two-dimensional reference maps, expression profiles, and an interactive proteome databases Plant Physiol. 2005, 137, 1397-1419
20. Hajduch, M.; Casteel, J. E.; Hurrelmeyer, K. E.; Song, Z.; Agrawal, G. K.; Thelen, J. J. Proteomic analysis of seed filling in Brassica napus. Developmental characterization of metabolic isozymes using high-resolution two-dimensional gel electrophoresis Plant Physiol. 2006, 141, 32-46
21. Barabasi, A. L.; Oltvai, Z. N. Network biology: understanding the cell's functional organization Nat. Rev. Genet. 2004, 5, 101-113
22. Hajduch, M.; Hearne, L. B.; Miernyk, J. A.; Casteel, J. E.; Joshi, T.; Agrawal, G. K.; Song, Z.; Zhou, M.; Xu, D.; Thelen, J. J. Systems analysis of seed filling in Arabidopsis: using general linear modeling to assess concordance of transcript and protein expression Plant Physiol. 2010, 152, 2078-87
23. Fell, D. A. Understanding the Control of Metabolism; Portland Press: London, 1996.
24. Fernie, A. R.; Stitt, M. On the discordance of metabolomics with proteomics and transcriptomics: coping with increasing complexity in logic, chemistry, and network interactions scientific correspondence Plant Physiol. 2012, 158, 1139-1145
25. Nagy, Z.; Németh, E.; Guóth, A.; Bona, L.; Wodala, B.; Pécsváradi, A. Metabolic indicators of drought stress tolerance in wheat: Glutamine synthetase isoenzymes and Rubisco Plant Physiol. Biochem. 2013, 67C, 48-54
26. Hossain, Z.; Makino, T.; Komatsu, S. Proteomic study of β-aminobutyric acid-mediated cadmium stress alleviation in soybean J. Proteomics 2012, 75, 4151-4164
27. Kang, F.; Rawsthorne, S. Starch and fatty acid synthesis in plastids from developing embryos of oilseed rape (Brassica napus L.) Plant J. 1994, 6, 795-805
28. Andre, C.; Froehlich, J. E.; Moll, M. R.; Benning, C. A heteromeric plastidic pyruvate kinase complex involved in seed oil biosynthesis in Arabidopsis Plant Cell 2007, 19 (6) 2006-22
29. Schwender, J.; Ohlrogge, J. B.; Shachar-Hill, Y. A flux model of glycolysis and the oxidative pentosephosphate pathway in developing Brassica napus embryos J. Biol. Chem. 2003, 278, 29442-29453
30. Schwender, J.; Shachar-Hill, Y.; Ohlrogge, J. B. Mitochondrial metabolism in developing embryos of Brassica napus J. Biol. Chem. 2006, 281, 34040-34047
31. Dussert, S.; Guerin, C.; Andersson, M.; Joët, T.; Tranbarger, T. J.; Pizot, M.; Sarah, G.; Omore, A.; Durand-Gasselin, T.; Morcillo, F. Comparative transcriptome analysis of three oil palm fruit and seed tissues that differ in oil content and Fatty Acid composition Plant Physiol. 2013, 162 (3) 1337-58
32. Bourgis, F.; Kilaru, A.; Cao, X.; Ngando-Ebongue, G. F.; Drira, N.; Ohlrogge, J. B.; Arondel, V. Comparative transcriptome and metabolite analysis of oil palm and date palm mesocarp that differ dramatically in carbon partitioning Proc. Natl. Acad. Sci. U. S. A. 2011, 108 (30) 12527-32
33. Khatoon, A.; Rehman, S.; Salavati, A.; Komatsu, S. A comparative proteomics analysis in roots of soybean to compatible symbiotic bacteria under flooding stress Amino Acids 2012, 43, 2513-25
34. Mishra, A.; Jha, B. Cloning differentially expressed salt induced cDNAs from Dunaliella salina under super saturated salt stress using subtractive hybridization Bot. Mar. 2011, 54, 189-193
35. Sarkar, A.; Rakwal, R.; Agrawal, S. B.; Shibato, J.; Ogawa, Y.; Yoshida, Y.; Agrawal, G. K.; Agrawal, M. Investigating the impact of elevated levels of ozone on tropical wheat using integrated phenotypical, physiological, biochemical, and proteomics approaches J. Proteome Res. 2010, 9, 4565-84
36. Sánchez-Bel, P.; Egea, I.; Sánchez-Ballesta, M. T.; Martinez-Madrid, C.; Fernandez-Garcia, N.; Romojaro, F.; Olmos, E.; Estrella, E.; Bolarín, M. C.; Flores, F. B. Understanding the mechanisms of chilling injury in bell pepper fruits using the proteomic approach J. Proteomics 2012, 75, 5463-78
37. Hu, X. L.; Lu, M. H.; Li, C. H.; Liu, T. X.; Wang, W.; Wu, J. Y.; Tai, F. J.; Li, X.; Zhang, J. Differential expression of proteins in maize roots in response to abscisic acid and drought Acta Physiol. Plant 2011, 33, 2437-2446
38. Wen, F. P.; Zhang, Z. H.; Bai, T.; Xu, Q.; Pan, Y. H. Proteomics reveals the effects of gibberellic acid (GA(3)) on salt-stressed rice (Oryza sativa L.) shoots Plant Sci. 2010, 178, 170-175
39. Guo, P.; Baum, M.; Grando, S.; Ceccarelli, S.; Bai, G.; Li, R.; von Korff, M.; Varshney, R. K.; Graner, A.; Valkoun, J. Differentially expressed genes between drought-tolerant and drought-sensitive barley genotypes in response to drought stress during the reproductive stage J. Exp. Bot. 2009, 60, 3531-44
40. Cheng, Y.; Long, M. A cytosolic NADP-malic enzyme gene from rice (Oryza sativa L.) confers salt tolerance in transgenic Arabidopsis Biotechnol. Lett. 2007, 29, 1129-34
41. Liu, S.; Cheng, Y.; Zhang, X.; Guan, Q.; Nishiuchi, S.; Hase, K.; Takano, T. Expression of an NADP-malic enzyme gene in rice (Oryza sativa L.) is induced by environmental stresses; over-expression of the gene in Arabidopsis confers salt and osmotic stress tolerance Plant Mol. Biol. 2007, 64, 49-58
42. Koh, H. J.; Lee, S. M.; Son, B. G.; Lee, S. H.; Ryoo, Z. Y.; Chang, K. T.; Park, J. W.; Park, D. C.; Song, B. J.; Veech, R. L.; Song, H.; Huh, T. L. Cytosolic NADP+-dependent isocitrate dehydrogenase plays a key role in lipid metabolism J. Biol. Chem. 2004, 279, 39968-39974
43. Lee, S. M.; Koh, H. J.; Park, D. C.; Song, B. J.; Huh, T. L.; Park, J. W. Cytosolic NADP-dependent isocitrate dehydrogenase status modulates oxidative damage to cells Free Radical Biol. Med. 2002, 32, 1185-1196
44. Zhu, K.; Zhao, J.; Lubman, D. M.; Miller, F. R.; Barder, T. J. Protein pI shifts due to posttranslational modifications in the separation and characterization of proteins Anal. Chem. 2005, 77, 2745-55
45. Regente, M.; De La Canal, L. Are storage 2S albumins also defensive proteins? Physiol. Mol. Plant Pathol. 2001, 59, 275-276
46. Sales, M. P.; Gerhardt, I. R.; Grossi-De-Sá, M. F.; Xavier-Filho, J. Do legume storage proteins play a role in defending seeds against bruchids? Plant Physiol. 2000, 124, 515-22