Proteomic analysis of mature soybean seeds from the chernobyl area suggests plant adaptation to the contaminated environment

Journal of Proteome Research

Volumn 8, Issue 6, 2009, Pages 2915-2922

  Danchenko, Maksym ^a   Skultety, Ludovit ^b   Rashydov, Namik M ^c   Berezhna, Valentyna V ^c   Mátel, L'ubomír ^d   Salaj, Terézia ^a   Pret'ová, Anna ^a   Hajduch, Martin ^a  

^a INSTITUTE OF CHEMISTRY   (Slovakia)

^b INSTITUTE OF VIROLOGY   (Slovakia)

^c INSTITUTE OF CELL BIOLOGY AND GENETIC ENGINEERING   (Ukraine)

^d Physics and Informatics   (Slovakia)

Author keywords

2 DE; Chernobyl; Radiation; Soybean

Indexed keywords

CESIUM 137; HEAVY METAL; SEED STORAGE PROTEIN; UNCLASSIFIED DRUG; VEGETABLE PROTEIN;

ARABIDOPSIS; ARTICLE; CHERNOBYL ACCIDENT; CONTROLLED STUDY; ENVIRONMENTAL RADIOACTIVITY; EVOLUTIONARY ADAPTATION; NONHUMAN; PLANT GROWTH; PLANT SEED; PLANT STRESS; PRIORITY JOURNAL; PROTEIN EXPRESSION; RADIATION PROTECTION; RADIOACTIVITY; SEED DEVELOPMENT; SOIL MANAGEMENT; SOIL POLLUTION; SOYBEAN; STRUCTURAL PROTEOMICS; TANDEM MASS SPECTROMETRY; TWO DIMENSIONAL GEL ELECTROPHORESIS;

ADAPTATION, PHYSIOLOGICAL; CESIUM ISOTOPES; CHERNOBYL NUCLEAR ACCIDENT; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; GENE EXPRESSION; GEOGRAPHY; MODELS, BIOLOGICAL; PLANT PROTEINS; PROTEOMICS; SEEDS; SOIL POLLUTANTS, RADIOACTIVE; SOYBEANS; STRESS, PHYSIOLOGICAL; TANDEM MASS SPECTROMETRY; TIME FACTORS; UKRAINE;

GLYCINE MAX;

EID: 67049095500     PISSN: 15353893     EISSN: None     Source Type: Journal    
DOI: 10.1021/pr900034u     Document Type: Article

References (40)

1. Møller, A. P.; Mousseau, T. A. Biological consequences of Chernobyl: 20 years on. Trends Ecol. Evol. 2006, 21, 200-207.
2. Boubriak, I. I.; Grodzinsky, D. M.; Polischuk, V. P.; Naumenko, V. D.; Gushcha, N. P.; Micheev, A. N.; McCready, S. J.; Osborne, D. J. Adaptation and impairment of DNA repair function in pollen of Betula verrucosa and seeds of Oenothera biennis from differently radionuclide-contaminated sites of Chernobyl. Ann. Bot. (London, U.K.) 2008, 101, 267-276.
3. Chernobyl Forum. Chernobyl: The True Scale of the Accident. 20 Years Later a UN Report Provides Definitive Answers and Ways to Repair Lives, IAEA, WHO, UNDP, 2005.
4. Kovalchuk, O.; Burke, P.; Arkhipov, A.; Kuchma, N.; James, S. J.; Kovalchuk, I.; Pogribny, I. Genome hypermethylation in Pinus silvestris of Chernobyl-a mechanism for radiation adaptation. Mutat. Res. 2003, 529, 13-20. (Pubitemid 37013385)
5. Kovalchuk, I.; Abramov, V.; Pogribny, I.; Kovalchuk, O. Molecular aspects of plant adaptation to life in the Chernobyl zone. Plant Physiol. 2004, 135, 357-363. (Pubitemid 38653682)
6. Kovalchuk, O.; Dubrova, Y. E.; Arkhipov, A.; Hohn, B.; Kovalchuk, I. Wheat mutation rate after Chernobyl. Nature (London) 2000, 407, 583-584. (Pubitemid 30775360)
7. Kovalchuk, I.; Molinier, J.; Yao, Y.; Arkhipov, A.; Kovalchuk, O. Transcriptome analysis reveals fundamental differences in plant response to acute and chronic exposure to ionizing radiation. Mutat. Res. 2007, 624, 101-113. (Pubitemid 47595333)
8. Hajduch, M.; Ganapathy, A.; Stein, J. W.; Thelen, J. J. Systematic proteomic study of seed filling in soybean. Establishment of high-resolution two-dimensional reference maps, expression profiles, and an interactive proteome database. Plant Physiol. 2005, 137, 1397-1419. (Pubitemid 43119338)
9. Bradford, M. M. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal. Biochem. 1976, 72, 248-254.
10. Hernychova, L.; Toman, R.; Ciampor, F.; Hubalek, M.; Vackova, J.; Macela, A.; Skultety, L. Detection and identification of Coxiella burnetii based on the mass spectrometric analyses of the extracted proteins. Anal. Chem. 2008, 80, 7097-7104.
11. Choi, Y. H.; Lim, K. M.; Choi, H. J.; Choi, G. S.; Lee, H. S.; Lee, C. W. Plant uptake and downward migration of 85Sr and 137Cs after their deposition on to flooded rice fields: lysimeter experiments with and without the addition of KCl and lime. J. Environ. Radioact. 2005, 78, 35-49.
12. Choi, Y. H.; Lim, K. M.; Park, H. G.; Park, D. W.; Kang, H. S.; Lee, H. S. Transfer of 137Cs to rice plants from various paddy soils contaminated under flooded conditions at different growth stages. J. Environ. Radioact. 2005, 80, 45-58. (Pubitemid 40093726)
13. Douka, C. E.; Xenoulis, A. C. Radioactive isotope uptake in a grass-legume association. Environ. Pollut. 1991, 73, 11-23.
14. Soudek, P.; Valenová, S.; Vavríková, Z.; Vanek, T. (137)Cs and (90)Sr uptake by sunflower cultivated under hydroponic conditions. J. Environ. Radioact. 2006, 88, 236-250.
15. Campostrini, N.; Areces, L. B.; Rappsilber, J.; Pietrogrande, M. C.; Dondi, F.; Patorino, F.; Ponzoni, M.; Righetti, P. G. Spot overlapping in two-dimensional maps: A serious problem ignored for much too long. Proteomics 2005, 5, 2385-2395. (Pubitemid 40835408)
16. Sahr, T.; Voigt, G.; Schimmack, W.; Paretzke, H. G.; Ernst, D. Low-level radiocaesium exposure alters gene expression in roots of Arabidopsis. New Phytol. 2005, 168, 141-148. (Pubitemid 43919612)
17. Kim, J. H.; Moon, Y. R.; Kim, J. S.; Oh, M. H.; Lee, J. W.; Chung, B. Y. Transcriptomic profile of Arabidopsis rosette leaves during the reproductive stage after exposure to ionizing radiation. Radiat. Res. 2007, 168, 267-280. (Pubitemid 351295129)
18. Bevan, M.; Bancroft, I.; Bent, E.; Love, K.; Goodman, H.; Dean, C.; Bergkamp, R.; Dirkse, W.; Van Staveren, M.; Stiekema, W.; Drost, L.; Ridley, P.; Hudson, S.-A.; Parel, K.; Murphy, G.; Piffanelli, P.; Wedler, H.; Wedler, E.; Wambutt, R.; Weizenegger, T.; Pohl, T. M.; Terryn, N.; Gielen, J.; Villarroel, R.; De Clerck, R.; Van Montagu, M.; Lecharny, A.; Auborg, S.; Gy, I.; Kreis, M.; Lao, N.; Kavanagh, T.; Hempel, S.; Kotter, P.; Entian, K.-D.; Rieger, M.; Schaeffer, M.; Funk, B.; Muller-Auer, S.; Silvey, M.; James, R.; Monrfort, A.; Pons, A.; Puigdomenech, P.; Douka, A.; Voukelatou, E.; Milioni, D.; Hatzopoulos, P.; Pivandi, E.; Obermaier, B.; Hilbert, H.; Düsterhöft, A.; Moores, T.; Jones, J. D. G.; Eneva, T.; Palme, K.; Nenes, V.; Rechman, S.; Ansorge, W.; Cooke, R.; Berger, C.; Delseny, M.; Voet, M.; Volckaert, G.; Mewes, H.-W.; Klosterman, S.; Schueller, C.; Chalwatzis, N. Analysis of 19 Mb of contiguous sequence from chromosome 4 of Arabidopsis thaliana. Nature (London) 1998, 391, 485-488. (Pubitemid 28086548)
19. Keppler, L. D.; Novacky, A. The initiation of membrane lipid peroxidation during bacteria-induced hypersensitive reactions. Physiol. Mol. Plant Pathol. 1987, 30, 233-245.
20. Morigasaki, S.; Shimada, K.; Ikner, A.; Yanagida, M.; Shiozaki, K. Glycolytic enzyme GAPDH promotes peroxide stress signaling through multistep phosphorelay to a MAPK cascade. Mol. Cell 2008, 30, 108-113.
21. Michalak, M.; Groenendyk, J.; Szabo, E.; Gold, L. I.; Opas, M. Calreticulin, a multi-process calcium-buffering chaperone of the endoplasmic reticulum. Biochem. J. 2009, 417, 651-666.
22. Christensen, A.; Svensson, K.; Persson, S.; Jung, J.; Michalak, M.; Widell, S.; Sommarin, M. Functional characterization of Arabidopsis calreticulin1a: a key alleviator of endoplasmic reticulum stress. Plant Cell Physiol. 2008, 49, 912-924.
23. Kramer, S.; Piotrowski, M.; Kuhnemann, F.; Edelmann, H. G. Physiological and biochemical characterization of ethylene-generated gravicompetence in primary shoots of coleoptile-less gravi-incompetent rye seedlings. J. Exp. Bot. 2003, 54, 2723-2732. (Pubitemid 37537863)
24. Sales, M. P.; Gerhardt, I. R.; Grossi-De-Sá, M. F.; Xavier-Filho, J. Do legume storage proteins play a role in defending seeds against bruchids. Plant Physiol. 2000, 124, 515-522. (Pubitemid 30801051)
25. Regente, M.; De La Canal, L. Are storage 2S albumins also defensive proteins. Physiol. Mol. Plant Pathol. 2001, 59, 275-276. (Pubitemid 34190690)
26. Rajjou, L.; Belghazi, M.; Huguet, R.; Robin, C.; Moreau, A.; Job, C.; Job, D. Proteomic investigation of the effect of salicylic acid on Arabidopsis seed germination and establishment of early defense mechanisms. Plant Physiol. 2006, 141, 910-923. (Pubitemid 44061598)
27. Aghaei, K.; Ehsanpour, A. A.; Shah, A. H.; Komatsu, S. Proteome analysis of soybean hypocotyl and root under salt stress. Amino Acids 2008, 7, 4858-4868.
28. Agrawal, G. K.; Hajduch, M.; Graham, K.; Thelen, J. J. In-depth investigation of the soybean seed-filling proteome and comparison with a parallel study of rapeseed. Plant Physiol. 2008, 148, 504-518. (Pubitemid 352847583)
29. Steffens, J. C. The heavy metal-binding peptides of plants. Annu. Rev. Plant Physiol. Plant Mol. Biol. 1990, 41, 553-575. (Pubitemid 120024693)
30. Harada, E.; Choi, Y. E.; Tsuchisaka, A.; Obata, H.; Sano, H. Transgenic tobacco plants expressing a rice cysteine synthase gene are tolerant to toxic levels of cadmium. J. Plant Physiol. 2001, 158, 655-661. (Pubitemid 32500962)
31. Kawashima, C. G.; Noji, M.; Nakamura, M.; Ogra, Y.; Suzuki, K. T.; Saito, K. Heavy metal tolerance of transgenic tobacco plants overexpressing cysteine synthase. Biotechnol. Lett. 2004, 26, 153-157. (Pubitemid 38192310)
32. Noji, M.; Saito, M.; Nakamura, M.; Aono, M.; Saji, H.; Saito, K. Cysteine synthase overexpression in tobacco confers tolerance to sulfur-containing environmental pollutants. Plant Physiol. 2001, 126, 973-980. (Pubitemid 32656786)
33. Rorat, T. Plant dehydrins--tissue location, structure and function. Cell. Mol. Biol. Lett. 2006, 11, 536-556. (Pubitemid 46708880)
34. Ingram, J.; Bartels, D. The molecular basis of dehydration tolerance in plants. Annu. Rev. Plant Physiol. Plant Mol. Biol. 1996, 47, 377-403. (Pubitemid 126669759)
35. Close, T. J. Dehydrins: emergence of a biochemical role of a family of plant dehydration proteins. Physiol. Plant. 1996, 97, 795-803. (Pubitemid 27093675)
36. Zhang, Y.; Li, J.; Yu, F.; Cong, L.; Wang, L.; Burkard, G.; Chai, T. Cloning and expression analysis of SKn-type dehydrin gene from bean in response to heavy metals. Mol. Biotechnol. 2006, 32, 205-218.
37. Xu, J.; Zhang, Y. X.; Wei, W.; Han, L.; Guan, Z. Q.; Wang, Z.; Chai, T. Y. BjDHNs confer heavy-metal tolerance in plants. Mol. Biotechnol. 2008, 38, 91-98.
38. Close, T. J. Dehydrins: a commonalty in the response of plants to dehydration and low temperature. Physiol. Plant. 1997, 100, 291-296. (Pubitemid 27274905)
39. Nakamura, T.; Nomura, M.; Mori, H.; Jagendorf, A. T.; Ueda, A.; Takabe, T. An isozyme of betaine aldehyde dehydrogenase in barley. Plant Cell. Physiol. 2001, 42, 1088-1092. (Pubitemid 33037877)
40. Monobe, M.; Uzawa, A.; Hino, M.; Ando, K.; Kojima, S. Glycine betaine, a beer component, protects radiation-induced injury. J. Radiat. Res. 2005, 46, 117-121. (Pubitemid 40780157)