Agricultural recovery of a formerly radioactive area: II. Systematic proteomic characterization of flax seed development in the remediated Chernobyl area

Journal of Proteomics

Volumn 74, Issue 8, 2011, Pages 1378-1384

  Klubicová, Katarína ^a   Danchenko, Maksym ^a,b   Skultety, Ludovit ^a   Berezhna, Valentyna V ^b   Hricová, Andrea ^a   Rashydov, Namik M ^b   Hajduch, Martin ^a  

^a INSTITUTE OF CHEMISTRY   (Slovakia)

^b INSTITUTE OF CELL BIOLOGY AND GENETIC ENGINEERING   (Ukraine)

Author keywords

Chernobyl; Flax; Linum usitatissimum L; Mass spectrometry; Protein profiles; Proteomics; Radiation; Remediation

Indexed keywords

ALBUMIN; ENOLASE; GLOBULIN; GLYCOLYTIC ENZYME; PHOSPHOGLUCOMUTASE; PHOSPHOGLYCERATE KINASE; TRIOSEPHOSPHATE ISOMERASE; VEGETABLE PROTEIN;

AGRICULTURE; ARTICLE; BIOREMEDIATION; CARBON METABOLISM; CHERNOBYL ACCIDENT; EMBRYO DEVELOPMENT; FLAX; FUNCTIONAL PROTEOMICS; GENOME ANALYSIS; HARVESTING; NONHUMAN; PLANT DEVELOPMENT; PRIORITY JOURNAL; PROTEIN EXPRESSION; PROTEIN ISOLATION; PROTEIN LOCALIZATION; QUANTITATIVE ANALYSIS; RADIOACTIVE CONTAMINATION; RADIOACTIVE POLLUTION; SEED DEVELOPMENT; TANDEM MASS SPECTROMETRY; TWO DIMENSIONAL ELECTROPHORESIS;

AGRICULTURE; CHERNOBYL NUCLEAR ACCIDENT; FLAX; GENE EXPRESSION PROFILING; PROTEOMICS; SEEDS;

LINUM USITATISSIMUM;

EID: 79961014181     PISSN: 18743919     EISSN: 18767737     Source Type: Journal    
DOI: 10.1016/j.jprot.2011.02.029     Document Type: Article

References (31)

1. Ansoangh L.R., Catlin R.J., Goldman M. The global impact of the Chernobyl reactor accident. Science 1988, 240:1512-1519.
2. Møller A.P., Mousseau T.A. Biological consequences of Chernobyl: 20years on. Trends Ecol Evol 2006, 21:200-207.
3. Howard B., Beresford N.A. Chernobyl radiocaesium in an upland sheep farm ecosystem. Br Vet J 1989, 145:212-219.
4. Geraskin S.A., Zimina L.M., Dikarev V.G., Dikareva N.S., Zimin V.L., Vasiliyev D.V., et al. Bioindication of the anthropogenic effects on micropopulations of Pinus sylvestris, L. in the vicinity of a plant for the storage and processing of radioactive waste and in the Chernobyl NPP zone. J Environ Radioact 2003, 66:171-180.
5. Geraskin S.A., Dikarev V.G., Zyablitskaya Y.Y., Oudalova A.A., Spirin Y.V., Alexakhin R.M. Genetic consequences of radioactive contamination by the Chernobyl fallout to agricultural crops. J Environ Radioact 2003, 66:155-169.
6. Geraskin S.A., Dikareva N.S., Oudalova A.A., Spiridonov S.I., Dikarev V.G. Cytogenetic effects in Scots pine populations inhabiting sites in Bryansk Region radioactively contaminated as a result of accident on Chernobyl NPP. Radiat Biol Radioecol 2008, 48:64-68.
7. Fesenko S.V., Alexhakin R.M., Balonov M.I., Bodgevitch J.M., Howard B.J., Kashparov V.A., et al. An extended critical review of twenty years of countermeasures used in agriculture after the Chernobyl accident. Sci Total Environ 2007, 383:1-24.
8. Oudalova A.A., Geraskin S.A., Dikarev V.G., Dikareva N.S. Cytogenetic effects in Pinus sylvestris L. populations experiencing chronic low level radioactive exposure. Radioprotection 2008, 48:219.
9. Kovalchuk O., Dubrova Y.E., Arkhipov A., Hohn B., Kovalchuk I. Wheat mutation rate after Chernobyl. Nature 2000, 407:583-584.
10. Bell J.N.B., Shaw G. Ecological lessons from the Chernobyl accident. Environ Int 2005, 31:771-777.
11. Danchenko M., Skultety L., Rashydov N., Berezhna V., Matel L., Salaj T., et al. Proteomic analysis of mature soybean seeds from the Chernobyl area suggests plant adaptation to the contaminated environment. J Proteome Res 2009, 8:2915-2922.
12. Klubicová K., Danchenko M., Skultety L., Miernyk J.A., Rashydov N., Berezhna V., et al. Proteomics analysis of flax grown in Chernobyl area suggests limited effect of contaminated environment on seed proteome. Environ Sci Technol 2010, 44:6940-6946.
13. Klubicová K., Berčák M., Danchenko M., Skultety L., Rashydov N.M., Berezhna V.V., Miernyk J.A., Hajduch M. Agricultural recovery of a formerly radioactive area: I. Establishment of high-resolution quantitative protein map of mature flax seeds harvested from the remediated Chernobyl area. Phytochemistry 2011, 72:1308-1315.
14. Hajduch M., Ganapathy A., Stein J.W., Thelen J.J. A systematic proteomic study of seed filling in soybean. Establishment of high-resolution two-dimensional reference maps, expression profiles, and an interactive proteome database. Plant Physiol 2005, 137:1397-1419.
15. Bradford M.M. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 1976, 72:248-254.
16. Plumb R.S., Johnson K.A., Rainville P., Smith B.W., Wilson I.D., Castro-Perez J.M., et al. UPLC/MSE; a new approach for generating molecular fragment information for biomarker structure elucidation. Rapid Commun Mass Spectrom 2006, 20:1989-1994.
17. Pretova A., Obert B., Hajduch M., Gregova E. Total protein and isozyme characterization in the flax zygotic embryo during development. Sex Plant Reprod 2001, 13:329-334.
18. Bevan M., Bancroft I., Bent E., Love K., Goodman H., Dean C., et al. Analysis of 19Mb of contiguous sequence from chromosome 4 of Arabidopsis thaliana. Nature 1998, 391:485-488.
19. Miernyk JA, Preťová A, Olmedilla A, Klubicová K, Obert B, Hajduch M. Using proteomics to study sexual reproduction in angiosperms. Sex Plant Reprod. 2011;24:9-22.
20. Hajduch M., Casteel J.E., Hurrelmeyer K.E., Song Z., Agrawal G.K., Thelen J.J. Proteomic analysis of seed filling in Brassica napus. Developmental characterization of metabolic isozymes using high-resolution two-dimensional gel electrophoresis. Plant Physiol 2006, 141:32-46.
21. Houston N.L., Hajduch M., Thelen J.J. Quantitative proteomics of seed filling in castor: comparison with soybean and rapeseed reveals differences between photosynthetic and non-photosynthetic seed metabolism. Plant Physiol 2009, 151:857-868.
22. Hajduch M., Hearne L.B., Miernyk J.A., Casteel J.E., Joshi T., Agrawal G.K., et al. Systems analysis of seed filling in Arabidopsis: using general linear modeling to assess concordance of transcript and protein expression. Plant Physiol 2010, 152:2078-2087.
23. Oomah B.D., Mazza G. Flaxseed proteins-a review. Food Chem 1993, 48:109-114.
24. Vassel B., Nesbitt L.L. The nitrogenous constituents of flaxseed. II. The isolation of a purified protein fraction. J Biol Chem 1945, 159:571-584.
25. Madhusudhan K.T., Singh N. Isolation and characterization of a small molecular weight protein of linseed meal. Phytochemistry 1985, 24:2507-2509.
26. Truksa M., MacKenzie S.L., Qiu X. Molecular analysis of flax 2S storage protein conlinin and seed specific activity of its promoter. Plant Physiol Biochem 2003, 41:141-147.
27. Dennis D.T., Miernyk J.A. Compartmentation of nonphotosynthetic carbohydrate metabolism. Annu Rev Plant Physiol 1982, 33:27-50.
28. Finnie C., Melchior S., Roepstorff P., Svensson B. Proteome analysis of grain filling and seed maturation in barley. Plant Physiol 2002, 129:1308-1319.
29. Gallardo K., Le Signor C., Vandekerckhove J., Thompson R.D., Burstin J. Proteomics of Medicago truncatula seed development establishes the time frame of diverse metabolic processes related to reserve accumulation. Plant Physiol 2003, 133:664-682.
30. Gallardo K., Firnhaber C., Zuber H., Héricher D., Belghazi M., Henry C., et al. A combined proteome and transcriptome analysis of developing Medicago truncatula seeds: evidence for metabolic specialization of maternal and filial tissues. Mol Cell Proteomics 2007, 6:2165-2179.
31. Schiltz S., Gallardo K., Huart M., Negroni L., Sommerer N., Burstin J. Proteome reference maps of vegetative tissues in pea. An investigation of nitrogen mobilization from leaves during seed filling. Plant Physiol 2004, 135:2241-2260.