Proteomics analysis of flax grown in Chernobyl area suggests limited effect of contaminated environment on seed proteome

Environmental Science and Technology

Volumn 44, Issue 18, 2010, Pages 6940-6946

  Klubicová, Katarína ^a   Danchenko, Maksym ^a,d   Skultety, Ludovit ^b   Miernyk, Ján A ^a,c   Rashydov, Namik M ^d   Berezhna, Valentyna V ^d   Pretâová, Anna ^a,e   Hajduch, Martin ^a  

^a INSTITUTE OF CHEMISTRY   (Slovakia)

^b INSTITUTE OF VIROLOGY   (Slovakia)

^c University of Missouri   (United States)

^d INSTITUTE OF CELL BIOLOGY AND GENETIC ENGINEERING   (Ukraine)

^e NONE   (Slovakia)

Author keywords

[No Author keywords available]

Indexed keywords

CHERNOBYL; CONTAMINATED ENVIRONMENT; CONTAMINATED SOILS; CONTROL FIELDS; LINUM USITATISSIMUM; P-VALUES; PLANT ADAPTATION; PROTEIN SPOTS; PROTEOMES; PROTEOMICS; SIGNALING PATHWAYS; TANDEM-MASS SPECTROMETRY; TOTAL PROTEIN;

CESIUM; ECOLOGY; ELECTROPHORESIS; FLAX; LINEN; MASS SPECTROMETRY; MOLECULAR BIOLOGY; NUCLEAR POWER PLANTS; NUCLEAR REACTOR ACCIDENTS; PLANTS (BOTANY); PROTEINS; SEED; SOIL POLLUTION; YARN;

CONTAMINATION;

CESIUM 137; RADIOISOTOPE; STRONTIUM 90;

CESIUM ISOTOPE; CHERNOBYL ACCIDENT; DICOTYLEDON; GROWTH RATE; NUCLEAR POWER PLANT; PHYTOCHEMISTRY; POLLUTION EFFECT; PROTEIN; PROTEOMICS; RADIOACTIVE POLLUTION; RADIONUCLIDE; SOIL POLLUTION; STRONTIUM ISOTOPE;

ARTICLE; CHERNOBYL ACCIDENT; ECOSYSTEM; ENVIRONMENTAL PROTECTION; EVOLUTIONARY ADAPTATION; LINSEED; NONHUMAN; NUCLEAR ACCIDENT; NUCLEAR POWER PLANT; NUCLEOTIDE SEQUENCE; PLANT GROWTH; POLLUTION; PROTEIN ANALYSIS; PROTEIN ISOLATION; PROTEOMICS; QUANTITATIVE ANALYSIS; RADIOACTIVE CONTAMINATION; SOIL POLLUTION; TANDEM MASS SPECTROMETRY; TWO DIMENSIONAL ELECTROPHORESIS;

14-3-3 PROTEINS; ADAPTATION, PHYSIOLOGICAL; AIR POLLUTION, RADIOACTIVE; BASE SEQUENCE; BETAINE; CHERNOBYL NUCLEAR ACCIDENT; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; ENVIRONMENT; FLAX; GENOME, PLANT; GLYCOLYSIS; HYDROGEN-ION CONCENTRATION; LIPOXYGENASE; MODELS, BIOLOGICAL; PLANT PROTEINS; PROTEOME; PROTEOMICS; RADIATION, IONIZING; RADIOACTIVITY; SECRETORY PATHWAY; SEEDS; SOYBEANS;

LINUM USITATISSIMUM;

EID: 77956498380     PISSN: 0013936X     EISSN: 15205851     Source Type: Journal    
DOI: 10.1021/es100895s     Document Type: Article

References (47)

1. Møller, A. P.; Mousseau, T. A. Biological consequences of Chernobyl: 20 years on Trends Ecol. Evol. 2006, 21 (4) 200-207
2. Geraskin, S. A.; Dikarev, V. G.; Zyablitskaya, Y. Y.; Oudalova, A. A.; Spirin, Y. V.; Alexakhin, R. M. Genetic consequences of radioactive contamination by the Chernobyl fallout to agricultural crops J. Environ. Radioact. 2003, 66 (1-2) 155-169
3. Chernobyl Forum. Chernobyl. The true scale of the accident 20 years later; a UN report provides definitive answers and ways to repair lives; International Atomic Energy Agency World Health Organization, United Nations Development Programme, 2005; http://www-pub.iaea.org/MTCD/publications/PDF/ Pub1239-web.pdf.
4. Kovalchuk, O.; Dubrova, Y. E.; Arkhipov, A.; Hohn, B.; Kovalchuk, I. Wheat mutation rate after Chernobyl Nature 2000, 407 (6804) 583-584
5. Kovalchuk, I.; Abramov, V.; Pogribny, I.; Kovalchuk, O. Molecular aspects of plant adaptation to life in the Chernobyl zone Plant. Physiol. 2004, 135 (1) 357-363
6. Boubriak, I. I.; Grodzinsky, D. M.; Polischuk, V. P.; Naumenko, V. D.; Gushcha, N. P.; Micheev, A. N.; McCready, S. J.; Osborne, D. J. Adaptation and impairment of DNA repair function in pollen of Betula verrucosa and seeds of Oenothera biennis from differently radionuclide-contaminated sites of Chernobyl Ann. Bot. (London) 2008, 101 (2) 267-276
7. Danchenko, M.; Skultety, L.; Rashydov, N.; Berezhna, V.; Matel, L.; Salaj, T.; Pretova, A.; Hajduch, M. Proteomic analysis of mature soybean seeds from the Chernobyl area suggests plant adaptation to the contaminated environment J. Proteome Res. 2009, 8 (6) 2915-2922
8. Plumb, R. S.; Johnson, K. A.; Rainville, P.; Smith, B. W.; Wilson, I. D.; Castro-Perez, J. M.; Nicholson, J. K. UPLC/MSE, a new approach for generating molecular fragment information for biomarker structure elucidation Rapid Commun. Mass Spectrom. 2006, 20 (13) 1989-1994
9. Douka, C. E.; Xenoulis, A. C. Radioactive isotope uptake in a grass-legume association Environ. Pollut. 1991, 73 (1) 11-23
10. Shtangeeva, I. Uptake of uranium and thorium by native and cultivated plants J. Environ. Radioact. 2010, 101 (6) 458-63
11. Al-Kharouf, S. J.; Al-Hamarneh, I. F.; Dababneh, M. Natural radioactivity dose assessment and uranium uptake by agricultural crops at Khan Al-Zabeeb Jordan J. Environ. Radioact. 2008, 99 (7) 1192-1199
12. Hajduch, M.; Ganapathy, A.; Stein, J. W.; Thelen, J. J. Systematic proteomic study of seed filling in soybean. Establishment of high-resolution two-dimensional reference maps expression profiles and an interactive proteome database Plant Physiol. 2005, 137 (4) 1397-1419
13. Hajduch, M.; Casteel, J. E.; Hurrelmeyer, K. E.; Song, Z.; Agrawal, G. K.; Thelen, J. J. Proteomic analysis of seed filling in Brassica napus. Developmental characterization of metabolic isozymes using high-resolution two-dimensional gel electrophoresis Plant Physiol. 2006, 141 (1) 32-46
14. Houston, N. L.; Hajduch, M.; Thelen, J. J. Quantitative proteomics of seed filling in castor: comparison with soybean and rapeseed reveals differences between photosynthetic and nonphotosynthetic seed metabolism Plant Physiol. 2009, 151 (2) 857-868
15. Hajduch, M.; Casteel, J. E.; Tang, S.; Hearne, L. B.; Knapp, S.; Thelen, J. J. Proteomic analysis of near-isogenic sunflower varieties differing in seed oil traits J. Proteome Res. 2007, 6 (8) 3232-3241
16. Campostrini, N.; Areces, L. B.; Rappsilber, J.; Pietrogrande, M. C.; Dondi, F.; Patorino, F.; Ponzoni, M.; Righetti, P. G. Spot overlapping in two-dimensional maps: A serious problem ignored for much too long Proteomics 2005, 5 (9) 2385-2395
17. Park, E.-C.; Yoon, J. B.; Seong, J.-L.; Choi, K. S.; Kong, E. S.; Kim, Y. J.; Park, Y. M.; Park, E. M. Effect of ionizing radiation on rat tissue: Proteomic and biochemical analysis Prep. Biochem. Biotechnol. 2006, 36 (1) 19-35
18. Guipaud, O.; Holler, V.; Buard, V.; Tarlet, G.; Royer, N.; Vinh, J.; Benderitter, M. Time-course analysis of mouse serum proteome changes following exposure of the skin to ionizing radiation Proteomics 2007, 7 (21) 3992-4002
19. Sahr, T.; Voigt, G.; Schimmack, W.; Paretzke, H. G.; Ernst, D. Low-level radiocaesium exposure alters gene expression in roots of Arabidopsis New Phytol. 1998, 168 (1) 141-148
20. Mazzeo, J.; Neue, U.; Kele, M.; Plumb, R. Advancing LC Performance with Smaller Particles and Higher Pressure Anal. Chem. 2005, 77 (23) 460A-467A
21. Bevan, M.; Bancroft, I.; Bent, E.; Love, K.; Goodman, H.; Dean, C.; Bergkamp, R.; Dirkse, W.; Van Staveren, M.; Stiekema, W.; et al. Analysis of 19 Mb of contiguous sequence from chromosome 4 of Arabidopsis thaliana Nature 1998, 391 (6666) 485-488
22. Haimovitz-Friedman, A. Radiation-induced signal transduction and stress response Radiat. Res. 1998, 150 (5 Suppl) S102-S108
23. Liavonchanka, A.; Feussner, I. Lipoxygenases: occurrence functions and catalysis J. Plant Physiol. 2006, 163 (3) 348-357
24. Chung, H. S.; Niu, Y.; Browse, J.; Howe, G. A. Top hits in contemporary JAZ: an update on jasmonate signaling Phytochemistry 2009, 70 (13-14) 1547-1559
25. Colcombet, J.; Hirt, H. Arabidopsis MAPKs: a complex signalling network involved in multiple biological processes Biochem. J. 2008, 413 (2) 217-226
26. Rogers, L. D.; Foster, L. J. Phosphoproteomics-finally fulfilling the promise Mol. Biosyst. 2009, 5 (10) 1122-1129
27. Emes, M. J. Oxidation of methionine residues: the missing link between stress and signalling responses in plants Biochem. J. 2009, 422 (2 e1-2
28. Chevalier, D.; Morris, E. R.; Walker, J. C. FHA domains mediate phosphoprotein interactions Annu. Rev. Plant Biol. 2009, 60, 67-91
29. Oecking, C.; Jaspert, N. Plant 14-3-3 proteins catch up with their mammalian orthologs Curr. Opin. Plant Biol. 2009, 12 (6) 760-765
30. Chang, I. F.; Curran, A.; Woolsey, R.; Quilici, D.; Cushman, J. C.; Mittler, R.; Harmon, A.; Harper, J. F. Proteomic profiling of tandem affinity purified 14-3-3 protein complexes in Arabidopsis thaliana Proteomics 2009, 9 (11) 2967-2985
31. Ralser, M.; Wamelink, M. M.; Kowald, A.; Gerisch, B.; Heeren, G.; Struys, E. A.; Klipp, E.; Jakobs, C.; Breitenbach, M.; Lehrach, H.; Krobitsch, S. Dynamic rerouting of the carbohydrate flux is key to counteracting oxidative stress J. Biol. 2007, 6 (4) 10
32. Grant, C. M. Metabolic reconfiguration is a regulated response to oxidative stress J. Biol. 2008, 7 (1) 1
33. Lehmann, M.; Schwarzländer, M.; Obata, T.; Sirikantaramas, S.; Burow, M.; Olsen, C. E.; Tohge, T.; Fricker, M. D.; Møller, B. L.; Fernie, A. R.; Sweetlove, L. J.; Laxa, M. The metabolic response of Arabidopsis roots to oxidative stress is distinct from that of heterotrophic cells in culture and highlights a complex relationship between the levels of transcripts metabolites and flux Mol. Plant. 2009, 2 (3) 390-406
34. Plaxton, W. C. The organization and regulation of plant glycolysis Annu. Rev. Plant Physiol. Plant Mol. Biol. 1996, 47, 185-214
35. Stein, M.; Gabdoulline, R. R.; Wade, R. C. Cross-species analysis of the glycolytic pathway by comparison of molecular interaction fields Molec. BioSyst. 2010, 6 (1) 162-174
36. Feala, J. D.; Coquin, L.; Zhou, D.; Haddad, G. G.; Paternostro, G.; McCulloch, A. D. Metabolism as means for hypoxia adaptation: metabolic profiling and flux balance analysis BMC Syst. Biol. 2009, 3, 91
37. Kresge, N.; Simoni, R. D.; Hill, R. L. The thermodynamic hypothesis of protein folding: The work of Christian Anfinsen J. Biol. Chem. 2006, 281 e11
38. Hartl, F. U.; Hayer-Hartl, M. Molecular chaperones in the cytosol: from nascent chain to folded protein Science 2002, 295 (5561) 1852-1858
39. Clarke, A. R. Cytosolic chaperonins: a question of promiscuity Mol. Cell 2006, 24 (2) 165-167
40. Urade, R. The endoplasmic reticulum stress signaling pathways in plants Biofactors 2009, 35 (4) 326-331
41. Michalak, M.; Groenendyk, J.; Szabo, E.; Gold, L. I.; Opas, M. Calreticulin a multi-process calcium-buffering chaperone of the endoplasmic reticulum Biochem. J. 2009, 417 (3) 651-666
42. Nakamura, T.; Nomura, M.; Mori, H.; Jagendorf, A. T.; Ueda, A.; Takabe, T. An isozyme of betaine aldehyde dehydrogenase in barley Plant Cell Physiol. 2001, 42 (10) 1088-1092
43. Burnet, M.; Lafontaine, P. J.; Hanson, A. D. Assay purification and partial characterization of choline monooxygenase from spinach Plant Physiol. 1995, 108 (2) 581-588
44. Monobe, M.; Uzawa, A.; Hino, M.; Ando, K.; Kojima, S. Glycine betaine a beer component protects radiation-induced injury J. Radiat. Res. (Tokyo) 2005, 46 (1) 117-121
45. Waditee, R.; Bhuiyan, N. H.; Hirata, E.; Hibino, T.; Tanaka, Y.; Shikata, M.; Takabe, T. Metabolic engineering for betaine accumulation in microbes and plants J. Biol. Chem. 2007, 282 (47) 34185-34193
46. Armengaud, J. Proteogenomics and systems biology: quest for the ultimate missing parts Expert Rev. Proteomics 2010, 7 (1) 65-77
47. Guimera, R.; Nunes Amaral, L. A. Functional cartography of complex metabolic networks Nature 2005, 433 (7028) 895-900