-
1
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
Lander,E.S. et al. (2001) Initial sequencing and analysis of the human genome. Nature, 409, 860-921.
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
Lander, E.S.1
-
2
-
-
58149507192
-
Effects of retroviruses on host genome function
-
Jern,P. et al. (2008) Effects of retroviruses on host genome function. Annu. Rev. Genet., 42, 709-732.
-
(2008)
Annu. Rev. Genet.
, vol.42
, pp. 709-732
-
-
Jern, P.1
-
3
-
-
80455158263
-
Identification, characterization, and comparative genomic distribution of the HERV-K (HML-2) group of human endogenous retroviruses
-
Subramanian,R.P. et al. (2011) Identification, characterization, and comparative genomic distribution of the HERV-K (HML-2) group of human endogenous retroviruses. Retrovirology, 8, 90.
-
(2011)
Retrovirology
, vol.8
, pp. 90
-
-
Subramanian, R.P.1
-
4
-
-
33644828413
-
Functional human endogenous retroviral LTR transcription start sites are located between the R and U5 regions
-
Kovalskaya,E. et al. (2006) Functional human endogenous retroviral LTR transcription start sites are located between the R and U5 regions. Virology, 346, 373-378.
-
(2006)
Virology
, vol.346
, pp. 373-378
-
-
Kovalskaya, E.1
-
5
-
-
70350232064
-
Endogenous retroviral LTRs as promoters for human genes: a critical assessment
-
Cohen,C.J. et al. (2009) Endogenous retroviral LTRs as promoters for human genes: a critical assessment. Gene, 448, 105-114.
-
(2009)
Gene
, vol.448
, pp. 105-114
-
-
Cohen, C.J.1
-
6
-
-
80053158287
-
Selective changes of retroelement expression in human prostate cancer
-
Goering,W. et al. (2011) Selective changes of retroelement expression in human prostate cancer. Carcinogenesis, 32, 1484-1492.
-
(2011)
Carcinogenesis
, vol.32
, pp. 1484-1492
-
-
Goering, W.1
-
7
-
-
2642539950
-
Tissue specificity of enhancer and promoter activities of a HERV-K(HML-2) LTR
-
Ruda,V.M. et al. (2004) Tissue specificity of enhancer and promoter activities of a HERV-K(HML-2) LTR. Virus Res., 104, 11-16.
-
(2004)
Virus Res.
, vol.104
, pp. 11-16
-
-
Ruda, V.M.1
-
8
-
-
81855178276
-
Somatic retrotransposition alters the genetic landscape of the human brain
-
Baillie,J.K. et al. (2011) Somatic retrotransposition alters the genetic landscape of the human brain. Nature, 479, 534-537.
-
(2011)
Nature
, vol.479
, pp. 534-537
-
-
Baillie, J.K.1
-
9
-
-
33645757337
-
Retroviral elements and their hosts: insertional mutagenesis in the mouse germ line
-
Maksakova,I.A. et al. (2006) Retroviral elements and their hosts: insertional mutagenesis in the mouse germ line. PLoS Genet., 2, e2.
-
(2006)
PLoS Genet.
, vol.2
-
-
Maksakova, I.A.1
-
10
-
-
77953889472
-
Natural mutagenesis of human genomes by endogenous retrotransposons
-
Iskow,R.C. et al. (2010) Natural mutagenesis of human genomes by endogenous retrotransposons. Cell, 141, 1253-1261.
-
(2010)
Cell
, vol.141
, pp. 1253-1261
-
-
Iskow, R.C.1
-
11
-
-
0031797726
-
Human-specific integrations of the HERV-K endogenous retrovirus family
-
Medstrand,P. et al. (1998) Human-specific integrations of the HERV-K endogenous retrovirus family. J. Virol., 72, 9782-9787.
-
(1998)
J. Virol.
, vol.72
, pp. 9782-9787
-
-
Medstrand, P.1
-
12
-
-
80052318161
-
A comprehensive map of mobile element insertion polymorphisms in humans
-
Stewart,C. et al. (2011) A comprehensive map of mobile element insertion polymorphisms in humans. PLoS Genet., 7, e1002236.
-
(2011)
PLoS Genet.
, vol.7
-
-
Stewart, C.1
-
13
-
-
33645786590
-
dbRIP: a highly integrated database of retrotransposon insertion polymorphisms in humans
-
Wang,J. et al. (2006) dbRIP: a highly integrated database of retrotransposon insertion polymorphisms in humans. Hum. Mutat., 27, 323-329.
-
(2006)
Hum. Mutat.
, vol.27
, pp. 323-329
-
-
Wang, J.1
-
14
-
-
84886998463
-
-
Brock University. dbR.IP. (7 May 2013 date last accessed).
-
Brock University. dbRIP. http://dbrip.brocku.ca/ (7 May 2013, date last accessed).
-
-
-
-
15
-
-
34250813062
-
Insertional polymorphisms: a new lease of life for endogenous retroviruses in human disease
-
Moyes,D. et al. (2007) Insertional polymorphisms: a new lease of life for endogenous retroviruses in human disease. Trends Genet., 23, 326-333.
-
(2007)
Trends Genet.
, vol.23
, pp. 326-333
-
-
Moyes, D.1
-
16
-
-
79957492160
-
Human endogenous retrovirus K106 (HERV-K106) was infectious after the emergence of anatomically modern humans
-
Jha,A.R. et al. (2011) Human endogenous retrovirus K106 (HERV-K106) was infectious after the emergence of anatomically modern humans. PLoS One, 6, e20234.
-
(2011)
PLoS One
, vol.6
-
-
Jha, A.R.1
-
17
-
-
0035797901
-
Insertional polymorphisms of full-length endogenous retroviruses in humans
-
Turner,G. et al. (2001) Insertional polymorphisms of full-length endogenous retroviruses in humans. Curr. Biol., 11, 1531-1535.
-
(2001)
Curr. Biol.
, vol.11
, pp. 1531-1535
-
-
Turner, G.1
-
18
-
-
33845296602
-
Identification of an infectious progenitor for the multiple-copy HERV-K human endogenous retroelements
-
Dewannieux,M. et al. (2006) Identification of an infectious progenitor for the multiple-copy HERV-K human endogenous retroelements. Genome Res., 16, 1548-1556.
-
(2006)
Genome Res.
, vol.16
, pp. 1548-1556
-
-
Dewannieux, M.1
-
19
-
-
33846542981
-
Reconstitution of an infectious human endogenous retrovirus
-
Lee,Y.N. et al. (2007) Reconstitution of an infectious human endogenous retrovirus. PLoS Pathog., 3, e10.
-
(2007)
PLoS Pathog.
, vol.3
-
-
Lee, Y.N.1
-
20
-
-
34249819684
-
Physical and functional interactions of human endogenous retrovirus proteins Np9 and rec with the promyelocytic leukemia zinc finger protein
-
Denne,M. et al. (2007) Physical and functional interactions of human endogenous retrovirus proteins Np9 and rec with the promyelocytic leukemia zinc finger protein. J. Virol., 81, 5607-5616.
-
(2007)
J. Virol.
, vol.81
, pp. 5607-5616
-
-
Denne, M.1
-
21
-
-
79952232216
-
Global cancer statistics
-
Jemal,A. et al. (2011) Global cancer statistics. CA Cancer J. Clin., 61, 69-90.
-
(2011)
CA Cancer J. Clin.
, vol.61
, pp. 69-90
-
-
Jemal, A.1
-
22
-
-
0037057510
-
Are there two sides to colorectal cancer?
-
Iacopetta,B. (2002) Are there two sides to colorectal cancer? Int. J. Cancer, 101, 403-408.
-
(2002)
Int. J. Cancer
, vol.101
, pp. 403-408
-
-
Iacopetta, B.1
-
23
-
-
40549090918
-
Integrated analysis of chromosomal, microsatellite and epigenetic instability in colorectal cancer identifies specific associations between promoter methylation of pivotal tumour suppressor and DNA repair genes and specific chromosomal alterations
-
Derks,S. et al. (2008) Integrated analysis of chromosomal, microsatellite and epigenetic instability in colorectal cancer identifies specific associations between promoter methylation of pivotal tumour suppressor and DNA repair genes and specific chromosomal alterations. Carcinogenesis, 29, 434-439.
-
(2008)
Carcinogenesis
, vol.29
, pp. 434-439
-
-
Derks, S.1
-
24
-
-
74549120147
-
Analysis of genetic variants in never-smokers with lung cancer facilitated by an Internet-based blood collection protocol: a preliminary report
-
Girard,N. et al. (2010) Analysis of genetic variants in never-smokers with lung cancer facilitated by an Internet-based blood collection protocol: a preliminary report. Clin. Cancer Res., 16, 755-763.
-
(2010)
Clin. Cancer Res.
, vol.16
, pp. 755-763
-
-
Girard, N.1
-
25
-
-
16644383799
-
A case-control study of colorectal cancer in relation to lifestyle factors and genetic polymorphisms: design and conduct of the Fukuoka colorectal cancer study
-
Kono,S. et al. (2004) A case-control study of colorectal cancer in relation to lifestyle factors and genetic polymorphisms: design and conduct of the Fukuoka colorectal cancer study. Asian Pac. J. Cancer Prev., 5, 393-400.
-
(2004)
Asian Pac. J. Cancer Prev.
, vol.5
, pp. 393-400
-
-
Kono, S.1
-
26
-
-
34347260325
-
Alcohol dehydrogenase and aldehyde dehydrogenase polymorphisms and colorectal cancer: the Fukuoka Colorectal Cancer Study
-
Yin,G. et al. (2007) Alcohol dehydrogenase and aldehyde dehydrogenase polymorphisms and colorectal cancer: the Fukuoka Colorectal Cancer Study. Cancer Sci., 98, 1248-1253.
-
(2007)
Cancer Sci.
, vol.98
, pp. 1248-1253
-
-
Yin, G.1
-
27
-
-
38949214008
-
Association between genetic polymorphisms of the base excision repair gene MUTYH and increased colorectal cancer risk in a Japanese population
-
Tao,H. et al. (2008) Association between genetic polymorphisms of the base excision repair gene MUTYH and increased colorectal cancer risk in a Japanese population. Cancer Sci., 99, 355-360.
-
(2008)
Cancer Sci.
, vol.99
, pp. 355-360
-
-
Tao, H.1
-
28
-
-
0023691425
-
Genetic applications of an inverse polymerase chain reaction
-
Ochman,H. et al. (1988) Genetic applications of an inverse polymerase chain reaction. Genetics, 120, 621-623.
-
(1988)
Genetics
, vol.120
, pp. 621-623
-
-
Ochman, H.1
-
29
-
-
84886993465
-
-
New England Biolabs Inc. Restriction site densities deviating from expectations. (7 May 2013 date last accessed)
-
New England Biolabs, Inc. Restriction site densities deviating from expectations. http://tools.neb.com/vincze/gnsites/ (7 May 2013, date last accessed).
-
-
-
-
30
-
-
0035865239
-
Evolutionary analyses of the human genome
-
Li,W.H. et al. (2001) Evolutionary analyses of the human genome. Nature, 409, 847-849.
-
(2001)
Nature
, vol.409
, pp. 847-849
-
-
Li, W.H.1
-
31
-
-
35548984723
-
Evolution of mammalian chitinase(-like) members of family 18 glycosyl hydrolases
-
Bussink,A.P. et al. (2007) Evolution of mammalian chitinase(-like) members of family 18 glycosyl hydrolases. Genetics, 177, 959-970.
-
(2007)
Genetics
, vol.177
, pp. 959-970
-
-
Bussink, A.P.1
-
32
-
-
33646869235
-
Comprehensive analysis of 19q12 amplicon in human gastric cancers
-
Leung,S.Y. et al. (2006) Comprehensive analysis of 19q12 amplicon in human gastric cancers. Mod. Pathol., 19, 854-863.
-
(2006)
Mod. Pathol.
, vol.19
, pp. 854-863
-
-
Leung, S.Y.1
-
33
-
-
84859532376
-
Retrotransposon profiling of RNA polymerase III initiation sites
-
Qi,X. et al. (2012) Retrotransposon profiling of RNA polymerase III initiation sites. Genome Res., 22, 681-692.
-
(2012)
Genome Res.
, vol.22
, pp. 681-692
-
-
Qi, X.1
-
34
-
-
80455174805
-
A novel tumor-derived SGOL1 variant causes abnormal mitosis and unstable chromatid cohesion
-
Kahyo,T. et al. (2011) A novel tumor-derived SGOL1 variant causes abnormal mitosis and unstable chromatid cohesion. Oncogene, 30, 4453-4463.
-
(2011)
Oncogene
, vol.30
, pp. 4453-4463
-
-
Kahyo, T.1
-
35
-
-
80054773609
-
Reduced expression of MUTYH with suppressive activity against mutations caused by 8-hydroxyguanine is a novelpredictor of a poor prognosis in human gastric cancer
-
Shinmura,K. et al. (2011) Reduced expression of MUTYH with suppressive activity against mutations caused by 8-hydroxyguanine is a novelpredictor of a poor prognosis in human gastric cancer. J. Pathol., 225, 414-423.
-
(2011)
J. Pathol.
, vol.225
, pp. 414-423
-
-
Shinmura, K.1
-
36
-
-
80053096262
-
Genetic susceptibility to lung cancer
-
(Schol. Ed)
-
Sugimura,H. et al. (2011) Genetic susceptibility to lung cancer. Front. Biosci. (Schol. Ed)., 3, 1463-1477.
-
(2011)
Front. Biosci.
, vol.3
, pp. 1463-1477
-
-
Sugimura, H.1
-
37
-
-
1242319532
-
Human endogenous retrovirus K solo-LTR formation and insertional polymorphisms: implications for human and viral evolution
-
Hughes,J.F. et al. (2004) Human endogenous retrovirus K solo-LTR formation and insertional polymorphisms: implications for human and viral evolution. Proc. Natl Acad. Sci. USA, 101, 1668-1672.
-
(2004)
Proc. Natl Acad. Sci. USA
, vol.101
, pp. 1668-1672
-
-
Hughes, J.F.1
-
38
-
-
25144501550
-
Genomewide screening reveals high levels of insertional polymorphism in the human endogenous retrovirus family HERV-K(HML2): implications for present-day activity
-
Belshaw,R. et al. (2005) Genomewide screening reveals high levels of insertional polymorphism in the human endogenous retrovirus family HERV-K(HML2): implications for present-day activity. J. Virol., 79, 12507-12514.
-
(2005)
J. Virol.
, vol.79
, pp. 12507-12514
-
-
Belshaw, R.1
-
39
-
-
0035864284
-
Characterization of the three HERV-H proviruses with an open envelope reading frame encompassing the immunosuppressive domain and evolutionary history in primates
-
de Parseval,N. et al. (2001) Characterization of the three HERV-H proviruses with an open envelope reading frame encompassing the immunosuppressive domain and evolutionary history in primates. Virology, 279, 558-569.
-
(2001)
Virology
, vol.279
, pp. 558-569
-
-
De Parseval, N.1
-
40
-
-
55549145080
-
Endogenous retroviruses and cancer
-
Ruprecht,K. et al. (2008) Endogenous retroviruses and cancer. Cell. Mol. Life Sci., 65, 3366-3382.
-
(2008)
Cell. Mol. Life Sci.
, vol.65
, pp. 3366-3382
-
-
Ruprecht, K.1
-
41
-
-
9344225717
-
Insertional polymorphisms of endogenous HERV-K113 and HERV-K115 retroviruses in breast cancer patients and age-matched controls
-
Burmeister,T. et al. (2004) Insertional polymorphisms of endogenous HERV-K113 and HERV-K115 retroviruses in breast cancer patients and age-matched controls. AIDS Res. Hum. Retroviruses, 20, 1223-1229.
-
(2004)
AIDS Res. Hum. Retroviruses
, vol.20
, pp. 1223-1229
-
-
Burmeister, T.1
-
42
-
-
23244460443
-
The distribution of the endogenous retroviruses HERV-K113 and HERV-K115 in health and disease
-
Moyes,D.L. et al. (2005) The distribution of the endogenous retroviruses HERV-K113 and HERV-K115 in health and disease. Genomics, 86, 337-341.
-
(2005)
Genomics
, vol.86
, pp. 337-341
-
-
Moyes, D.L.1
-
43
-
-
41449090386
-
HERV-K113 is not associated with multiple sclerosis in a large family-based study
-
Moyes,D.L. et al. (2008) HERV-K113 is not associated with multiple sclerosis in a large family-based study. AIDS Res. Hum. Retroviruses, 24, 363-365.
-
(2008)
AIDS Res. Hum. Retroviruses
, vol.24
, pp. 363-365
-
-
Moyes, D.L.1
-
44
-
-
34648815009
-
Lung cancer in never smokers-a different disease
-
Sun,S. et al. (2007) Lung cancer in never smokers-a different disease. Nat. Rev. Cancer, 7, 778-790.
-
(2007)
Nat. Rev. Cancer
, vol.7
, pp. 778-790
-
-
Sun, S.1
-
45
-
-
11144248017
-
CpG methylation directly regulates transcriptional activity of the human endogenous retrovirus family HERV-K(HML-2)
-
Lavie,L. et al. (2005) CpG methylation directly regulates transcriptional activity of the human endogenous retrovirus family HERV-K(HML-2). J. Virol., 79, 876-883.
-
(2005)
J. Virol.
, vol.79
, pp. 876-883
-
-
Lavie, L.1
-
46
-
-
0344321897
-
Impact of aging on DNA methylation
-
Richardson,B. (2003) Impact of aging on DNA methylation. Ageing Res. Rev., 2, 245-261.
-
(2003)
Ageing Res. Rev.
, vol.2
, pp. 245-261
-
-
Richardson, B.1
-
47
-
-
77951169806
-
Distinctive patterns of age-dependent hypomethylation in interspersed repetitive sequences
-
Jintaridth,P. et al. (2010) Distinctive patterns of age-dependent hypomethylation in interspersed repetitive sequences. Physiol. Genomics, 41, 194-200.
-
(2010)
Physiol. Genomics
, vol.41
, pp. 194-200
-
-
Jintaridth, P.1
-
48
-
-
33749505475
-
Insertional polymorphism of endogenous retrovirus HERV-K115 in schizophrenia
-
Otowa,T. et al. (2006) Insertional polymorphism of endogenous retrovirus HERV-K115 in schizophrenia. Neurosci. Lett., 408, 226-229.
-
(2006)
Neurosci. Lett.
, vol.408
, pp. 226-229
-
-
Otowa, T.1
-
49
-
-
2942668626
-
Acidic mammalian chitinase in asthmatic Th2 inflammation and IL-13 pathway activation
-
Zhu,Z. et al. (2004) Acidic mammalian chitinase in asthmatic Th2 inflammation and IL-13 pathway activation. Science, 304, 1678-1682.
-
(2004)
Science
, vol.304
, pp. 1678-1682
-
-
Zhu, Z.1
-
50
-
-
65249168882
-
Acidic mammalian chitinase regulates epithelial cell apoptosis via a chitinolytic-independent mechanism
-
Hartl,D. et al. (2009) Acidic mammalian chitinase regulates epithelial cell apoptosis via a chitinolytic-independent mechanism. J. Immunol., 182, 5098-5106.
-
(2009)
J. Immunol.
, vol.182
, pp. 5098-5106
-
-
Hartl, D.1
-
51
-
-
57749119534
-
Acidic mammalian chitinase is secreted via an ADAM17/epidermal growth factor receptor-dependent pathway and stimulates chemokine production by pulmonary epithelial cells
-
Hartl,D. et al. (2008) Acidic mammalian chitinase is secreted via an ADAM17/epidermal growth factor receptor-dependent pathway and stimulates chemokine production by pulmonary epithelial cells. J. Biol. Chem., 283, 33472-33482.
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 33472-33482
-
-
Hartl, D.1
-
52
-
-
33750368085
-
Structural variation of the human genome
-
Sharp,A.J. et al. (2006) Structural variation of the human genome. Annu. Rev. Genomics Hum. Genet., 7, 407-442.
-
(2006)
Annu. Rev. Genomics Hum. Genet.
, vol.7
, pp. 407-442
-
-
Sharp, A.J.1
|