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Volumn 6, Issue 5, 2011, Pages

Human endogenous retrovirus K106 (HERV-k106) was infectious after the emergence of anatomically modern humans

Author keywords

[No Author keywords available]

Indexed keywords

3' UNTRANSLATED REGION; 5' UNTRANSLATED REGION; ARTICLE; CONTROLLED STUDY; GENE INSERTION; GENE LOCUS; GENE SEQUENCE; GENETIC VARIABILITY; HUMAN; HUMAN CELL; LONG TERMINAL REPEAT; MOLECULAR EVOLUTION; NONHUMAN; NUCLEOTIDE SEQUENCE; RETROVIRUS; RETROVIRUS INFECTION; RETROVIRUS K106; RETROVIRUS K106 INFECTION; RETROVIRUS K116; BINDING SITE; CLASSIFICATION; ENDOGENOUS RETROVIRUS; GENE EXPRESSION REGULATION; GENETICS; HUMAN GENOME; MOLECULAR GENETICS; PHYLOGENY; PROVIRUS; TIME; VIRUS GENOME;

EID: 79957492160     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0020234     Document Type: Article
Times cited : (42)

References (43)
  • 1
    • 33750341578 scopus 로고    scopus 로고
    • The evolutionary dynamics of human endogenous retroviral families
    • Bannert N, Kurth R, (2006) The evolutionary dynamics of human endogenous retroviral families. Annu Rev Genomics Hum Genet 7: 149-173.
    • (2006) Annu Rev Genomics Hum Genet , vol.7 , pp. 149-173
    • Bannert, N.1    Kurth, R.2
  • 2
    • 0036088127 scopus 로고    scopus 로고
    • HERVd: database of human endogenous retroviruses
    • Paces J, Pavlicek A, Paces V, (2002) HERVd: database of human endogenous retroviruses. Nucleic Acids Res 30: 205-206.
    • (2002) Nucleic Acids Res , vol.30 , pp. 205-206
    • Paces, J.1    Pavlicek, A.2    Paces, V.3
  • 3
    • 0035734951 scopus 로고    scopus 로고
    • Evidence for genomic rearrangements mediated by human endogenous retroviruses during primate evolution
    • Hughes JF, Coffin JM, (2001) Evidence for genomic rearrangements mediated by human endogenous retroviruses during primate evolution. Nat Genet 29: 487-489.
    • (2001) Nat Genet , vol.29 , pp. 487-489
    • Hughes, J.F.1    Coffin, J.M.2
  • 4
    • 50849100134 scopus 로고    scopus 로고
    • Antiretroelement activity of APOBEC3H was lost twice in recent human evolution
    • OhAinle M, Kerns JA, Li MM, Malik HS, Emerman M, (2008) Antiretroelement activity of APOBEC3H was lost twice in recent human evolution. Cell Host Microbe 4: 249-259.
    • (2008) Cell Host Microbe , vol.4 , pp. 249-259
    • OhAinle, M.1    Kerns, J.A.2    Li, M.M.3    Malik, H.S.4    Emerman, M.5
  • 5
    • 34250839345 scopus 로고    scopus 로고
    • Restriction of an extinct retrovirus by the human TRIM5alpha antiviral protein
    • Kaiser SM, Malik HS, Emerman M, (2007) Restriction of an extinct retrovirus by the human TRIM5alpha antiviral protein. Science 316: 1756-1758.
    • (2007) Science , vol.316 , pp. 1756-1758
    • Kaiser, S.M.1    Malik, H.S.2    Emerman, M.3
  • 7
    • 23244460443 scopus 로고    scopus 로고
    • The distribution of the endogenous retroviruses HERV-K113 and HERV-K115 in health and disease
    • Moyes DL, Martin A, Sawcer S, Temperton N, Worthington J, et al. (2005) The distribution of the endogenous retroviruses HERV-K113 and HERV-K115 in health and disease. Genomics 86: 337-341.
    • (2005) Genomics , vol.86 , pp. 337-341
    • Moyes, D.L.1    Martin, A.2    Sawcer, S.3    Temperton, N.4    Worthington, J.5
  • 8
    • 52649113832 scopus 로고    scopus 로고
    • Human endogenous retrovirus K (HML-2) elements in the plasma of people with lymphoma and breast cancer
    • Contreras-Galindo R, Kaplan MH, Leissner P, Verjat T, Ferlenghi I, et al. (2008) Human endogenous retrovirus K (HML-2) elements in the plasma of people with lymphoma and breast cancer. J Virol 82: 9329-9336.
    • (2008) J Virol , vol.82 , pp. 9329-9336
    • Contreras-Galindo, R.1    Kaplan, M.H.2    Leissner, P.3    Verjat, T.4    Ferlenghi, I.5
  • 9
    • 33846829834 scopus 로고    scopus 로고
    • HIV-1 infection increases the expression of human endogenous retroviruses type K (HERV-K) in vitro
    • Contreras-Galindo R, Lopez P, Velez R, Yamamura Y, (2007) HIV-1 infection increases the expression of human endogenous retroviruses type K (HERV-K) in vitro. AIDS Res Hum Retroviruses 23: 116-122.
    • (2007) AIDS Res Hum Retroviruses , vol.23 , pp. 116-122
    • Contreras-Galindo, R.1    Lopez, P.2    Velez, R.3    Yamamura, Y.4
  • 11
    • 34250813062 scopus 로고    scopus 로고
    • Insertional polymorphisms: a new lease of life for endogenous retroviruses in human disease
    • Moyes D, Griffiths DJ, Venables PJ, (2007) Insertional polymorphisms: a new lease of life for endogenous retroviruses in human disease. Trends Genet 23: 326-333.
    • (2007) Trends Genet , vol.23 , pp. 326-333
    • Moyes, D.1    Griffiths, D.J.2    Venables, P.J.3
  • 12
    • 77954633050 scopus 로고    scopus 로고
    • HIV persistence and the prospect of long-term drug-free remissions for HIV-infected individuals
    • Trono D, Van Lint C, Rouzioux C, Verdin E, Barre-Sinoussi F, et al. (2010) HIV persistence and the prospect of long-term drug-free remissions for HIV-infected individuals. Science 329: 174-180.
    • (2010) Science , vol.329 , pp. 174-180
    • Trono, D.1    Van Lint, C.2    Rouzioux, C.3    Verdin, E.4    Barre-Sinoussi, F.5
  • 13
    • 0034108733 scopus 로고    scopus 로고
    • Identification and characterization of novel human endogenous retrovirus families by phylogenetic screening of the human genome mapping project database
    • Tristem M, (2000) Identification and characterization of novel human endogenous retrovirus families by phylogenetic screening of the human genome mapping project database. J Virol 74: 3715-3730.
    • (2000) J Virol , vol.74 , pp. 3715-3730
    • Tristem, M.1
  • 14
    • 0037357461 scopus 로고    scopus 로고
    • Estimation of divergence times for major lineages of primate species
    • Glazko GV, Nei M, (2003) Estimation of divergence times for major lineages of primate species. Mol Biol Evol 20: 424-434.
    • (2003) Mol Biol Evol , vol.20 , pp. 424-434
    • Glazko, G.V.1    Nei, M.2
  • 15
    • 33645522272 scopus 로고    scopus 로고
    • Many human endogenous retrovirus K (HERV-K) proviruses are unique to humans
    • Barbulescu M, Turner G, Seaman MI, Deinard AS, Kidd KK, et al. (1999) Many human endogenous retrovirus K (HERV-K) proviruses are unique to humans. Curr Biol 9: 861-868.
    • (1999) Curr Biol , vol.9 , pp. 861-868
    • Barbulescu, M.1    Turner, G.2    Seaman, M.I.3    Deinard, A.S.4    Kidd, K.K.5
  • 16
    • 12144282045 scopus 로고    scopus 로고
    • Allelic variation of HERV-K(HML-2) endogenous retroviral elements in human populations
    • Macfarlane C, Simmonds P, (2004) Allelic variation of HERV-K(HML-2) endogenous retroviral elements in human populations. J Mol Evol 59: 642-656.
    • (2004) J Mol Evol , vol.59 , pp. 642-656
    • Macfarlane, C.1    Simmonds, P.2
  • 17
    • 0035797901 scopus 로고    scopus 로고
    • Insertional polymorphisms of full-length endogenous retroviruses in humans
    • Turner G, Barbulescu M, Su M, Jensen-Seaman MI, Kidd KK, et al. (2001) Insertional polymorphisms of full-length endogenous retroviruses in humans. Curr Biol 11: 1531-1535.
    • (2001) Curr Biol , vol.11 , pp. 1531-1535
    • Turner, G.1    Barbulescu, M.2    Su, M.3    Jensen-Seaman, M.I.4    Kidd, K.K.5
  • 18
    • 0029058002 scopus 로고
    • Complement component C4 gene intron 9 as a phylogenetic marker for primates: long terminal repeats of the endogenous retrovirus ERV-K(C4) are a molecular clock of evolution
    • Dangel AW, Baker BJ, Mendoza AR, Yu CY, (1995) Complement component C4 gene intron 9 as a phylogenetic marker for primates: long terminal repeats of the endogenous retrovirus ERV-K(C4) are a molecular clock of evolution. Immunogenetics 42: 41-52.
    • (1995) Immunogenetics , vol.42 , pp. 41-52
    • Dangel, A.W.1    Baker, B.J.2    Mendoza, A.R.3    Yu, C.Y.4
  • 21
    • 0034682079 scopus 로고    scopus 로고
    • Differences in HERV-K LTR insertions in orthologous loci of humans and great apes
    • Lebedev YB, Belonovitch OS, Zybrova NV, Khil PP, Kurdyukov SG, et al. (2000) Differences in HERV-K LTR insertions in orthologous loci of humans and great apes. Gene 247: 265-277.
    • (2000) Gene , vol.247 , pp. 265-277
    • Lebedev, Y.B.1    Belonovitch, O.S.2    Zybrova, N.V.3    Khil, P.P.4    Kurdyukov, S.G.5
  • 22
    • 0024297354 scopus 로고
    • Multiple sequence alignment with hierarchical clustering
    • Corpet F, (1988) Multiple sequence alignment with hierarchical clustering. Nucleic Acids Res 16: 10881-10890.
    • (1988) Nucleic Acids Res , vol.16 , pp. 10881-10890
    • Corpet, F.1
  • 23
    • 33846542981 scopus 로고    scopus 로고
    • Reconstitution of an infectious human endogenous retrovirus
    • Lee YN, Bieniasz PD, (2007) Reconstitution of an infectious human endogenous retrovirus. PLoS Pathog 3: e10.
    • (2007) PLoS Pathog , vol.3
    • Lee, Y.N.1    Bieniasz, P.D.2
  • 24
    • 33845296602 scopus 로고    scopus 로고
    • Identification of an infectious progenitor for the multiple-copy HERV-K human endogenous retroelements
    • Dewannieux M, Harper F, Richaud A, Letzelter C, Ribet D, et al. (2006) Identification of an infectious progenitor for the multiple-copy HERV-K human endogenous retroelements. Genome Res 16: 1548-1556.
    • (2006) Genome Res , vol.16 , pp. 1548-1556
    • Dewannieux, M.1    Harper, F.2    Richaud, A.3    Letzelter, C.4    Ribet, D.5
  • 25
    • 72849121671 scopus 로고    scopus 로고
    • Cross-sectional dating of novel haplotypes of HERV-K 113 and HERV-K 115 indicate these proviruses originated in Africa before Homo sapiens
    • Jha AR, Pillai SK, York VA, Sharp ER, Storm EC, et al. (2009) Cross-sectional dating of novel haplotypes of HERV-K 113 and HERV-K 115 indicate these proviruses originated in Africa before Homo sapiens. Mol Biol Evol 26: 2617-2626.
    • (2009) Mol Biol Evol , vol.26 , pp. 2617-2626
    • Jha, A.R.1    Pillai, S.K.2    York, V.A.3    Sharp, E.R.4    Storm, E.C.5
  • 26
    • 0036184745 scopus 로고    scopus 로고
    • Generating samples under a Wright-Fisher neutral model of genetic variation
    • Hudson RR, (2002) Generating samples under a Wright-Fisher neutral model of genetic variation. Bioinformatics 18: 337-338.
    • (2002) Bioinformatics , vol.18 , pp. 337-338
    • Hudson, R.R.1
  • 27
    • 27544497650 scopus 로고    scopus 로고
    • Calibrating a coalescent simulation of human genome sequence variation
    • Schaffner SF, Foo C, Gabriel S, Reich D, Daly MJ, et al. (2005) Calibrating a coalescent simulation of human genome sequence variation. Genome Res 15: 1576-1583.
    • (2005) Genome Res , vol.15 , pp. 1576-1583
    • Schaffner, S.F.1    Foo, C.2    Gabriel, S.3    Reich, D.4    Daly, M.J.5
  • 28
    • 0024313579 scopus 로고
    • Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
    • Tajima F, (1989) Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123: 585-595.
    • (1989) Genetics , vol.123 , pp. 585-595
    • Tajima, F.1
  • 29
    • 0027453041 scopus 로고
    • Statistical tests of neutrality of mutations
    • Fu YX, Li WH, (1993) Statistical tests of neutrality of mutations. Genetics 133: 693-709.
    • (1993) Genetics , vol.133 , pp. 693-709
    • Fu, Y.X.1    Li, W.H.2
  • 30
    • 65649117685 scopus 로고    scopus 로고
    • DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
    • Librado P, Rozas J, (2009) DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25: 1451-1452.
    • (2009) Bioinformatics , vol.25 , pp. 1451-1452
    • Librado, P.1    Rozas, J.2
  • 31
    • 79957452113 scopus 로고    scopus 로고
    • Browser THS The HGDP Selection Browser
    • Browser THS The HGDP Selection Browser.
  • 33
    • 35349012592 scopus 로고    scopus 로고
    • Genome-wide detection and characterization of positive selection in human populations
    • Sabeti PC, Varilly P, Fry B, Lohmueller J, Hostetter E, et al. (2007) Genome-wide detection and characterization of positive selection in human populations. Nature 449: 913-918.
    • (2007) Nature , vol.449 , pp. 913-918
    • Sabeti, P.C.1    Varilly, P.2    Fry, B.3    Lohmueller, J.4    Hostetter, E.5
  • 35
    • 13944279562 scopus 로고    scopus 로고
    • Stratigraphic placement and age of modern humans from Kibish, Ethiopia
    • McDougall I, Brown FH, Fleagle JG, (2005) Stratigraphic placement and age of modern humans from Kibish, Ethiopia. Nature 433: 733-736.
    • (2005) Nature , vol.433 , pp. 733-736
    • McDougall, I.1    Brown, F.H.2    Fleagle, J.G.3
  • 37
    • 34648822341 scopus 로고    scopus 로고
    • Effects of recombination rate on human endogenous retrovirus fixation and persistence
    • Katzourakis A, Pereira V, Tristem M, (2007) Effects of recombination rate on human endogenous retrovirus fixation and persistence. J Virol 81: 10712-10717.
    • (2007) J Virol , vol.81 , pp. 10712-10717
    • Katzourakis, A.1    Pereira, V.2    Tristem, M.3
  • 38
    • 45849088092 scopus 로고    scopus 로고
    • The effects of recombination rate on the distribution and abundance of transposable elements
    • Dolgin ES, Charlesworth B, (2008) The effects of recombination rate on the distribution and abundance of transposable elements. Genetics 178: 2169-2177.
    • (2008) Genetics , vol.178 , pp. 2169-2177
    • Dolgin, E.S.1    Charlesworth, B.2
  • 41
    • 25144501550 scopus 로고    scopus 로고
    • Genomewide screening reveals high levels of insertional polymorphism in the human endogenous retrovirus family HERV-K(HML2): implications for present-day activity
    • Belshaw R, Dawson AL, Woolven-Allen J, Redding J, Burt A, et al. (2005) Genomewide screening reveals high levels of insertional polymorphism in the human endogenous retrovirus family HERV-K(HML2): implications for present-day activity. J Virol 79: 12507-12514.
    • (2005) J Virol , vol.79 , pp. 12507-12514
    • Belshaw, R.1    Dawson, A.L.2    Woolven-Allen, J.3    Redding, J.4    Burt, A.5
  • 42
    • 1242319532 scopus 로고    scopus 로고
    • Human endogenous retrovirus K solo-LTR formation and insertional polymorphisms: implications for human and viral evolution
    • Hughes JF, Coffin JM, (2004) Human endogenous retrovirus K solo-LTR formation and insertional polymorphisms: implications for human and viral evolution. Proc Natl Acad Sci U S A 101: 1668-1672.
    • (2004) Proc Natl Acad Sci U S A , vol.101 , pp. 1668-1672
    • Hughes, J.F.1    Coffin, J.M.2
  • 43
    • 58149502605 scopus 로고    scopus 로고
    • A single amino acid substitution in a segment of the CA protein within Gag that has similarity to human immunodeficiency virus type 1 blocks infectivity of a human endogenous retrovirus K provirus in the human genome
    • Heslin DJ, Murcia P, Arnaud F, Van Doorslaer K, Palmarini M, et al. (2009) A single amino acid substitution in a segment of the CA protein within Gag that has similarity to human immunodeficiency virus type 1 blocks infectivity of a human endogenous retrovirus K provirus in the human genome. J Virol 83: 1105-1114.
    • (2009) J Virol , vol.83 , pp. 1105-1114
    • Heslin, D.J.1    Murcia, P.2    Arnaud, F.3    Van Doorslaer, K.4    Palmarini, M.5


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