Label-free and ultrasensitive microRNA detection based on novel molecular beacon binding readout and target recycling amplification

Biosensors and Bioelectronics

Volumn 53, Issue , 2014, Pages 377-383

  Dong, Haifeng ^a   Hao, Kaihong ^a   Tian, Yaping ^b   Jin, Shi ^a   Lu, Huiting ^a   Zhou, Shu Feng ^c   Zhang, Xueji ^a  

^a UNIVERSITY OF SCIENCE AND TECHNOLOGY BEIJING   (China)

^b CHINESE PLA GENERAL HOSPITAL   (China)

^c UNIVERSITY OF SOUTH FLORIDA   (United States)

Author keywords

MicroRNA detection; Molecular beacon; Oligonucleotide stabilized Ag nanoclusters; Target recycling

Indexed keywords

AG NANOCLUSTERS; FLUORESCENCE QUENCHING; HIGH SIGNAL-TO-NOISE RATIO; JUNCTION STRUCTURE; MICRORNA DETECTIONS; MOLECULAR BEACON; OPTIMAL CONDITIONS; SIGNAL AMPLIFICATIONS;

BIOSENSORS; METAL IONS; NANOCLUSTERS; OLIGONUCLEOTIDES; PROBES; RECYCLING;

RNA;

ENDONUCLEASE; MERCURY; MICRORNA; SILVER NANOPARTICLE;

ARTICLE; BIOSENSOR; CHEMICAL STRUCTURE; CONCENTRATION (PARAMETERS); CONTROLLED STUDY; FLUORESCENCE ANALYSIS; GENE AMPLIFICATION; GENE TARGETING; GENETIC PROCEDURES; MOLECULAR BEACON; PROTEIN RNA BINDING; RNA ANALYSIS; RNA BINDING; RNA CLEAVAGE; RNA CONFORMATION; RNA HYBRIDIZATION; SIGNAL NOISE RATIO; STRUCTURE ANALYSIS; TEMPERATURE;

MICRORNA DETECTION; MOLECULAR BEACON; OLIGONUCLEOTIDE-STABILIZED AG NANOCLUSTERS; TARGET RECYCLING;

BIOSENSING TECHNIQUES; HUMANS; MERCURY; METAL NANOPARTICLES; MICRORNAS; MOLECULAR PROBES; SIGNAL-TO-NOISE RATIO; SILVER;

EID: 84887008957     PISSN: 09565663     EISSN: 18734235     Source Type: Journal    
DOI: 10.1016/j.bios.2013.09.061     Document Type: Article

References (51)

1. Ambros V. Nature 2004, 431:350-355.
2. Bartel D.P. Cell 2004, 116:281-297.
3. Bonanni A., Pumera M. ACS Nano 2011, 5:2356-2361.
4. Calin G.A., Croce C.M. Nature Reviews Cancer 2006, 6:857-866.
5. Cissell K.A., Shrestha S., Deo S.K. Analytical Chemistry 2007, 79:4754-4761.
6. Dipak K.B., Harekrishna B., Priyanka S., Gobinda P.S., Sankar P.D.M., Ajay J. Journal of Molecular Liquids 2009, 145:33-37.
7. Dong H.F., Gao W.C., Yan F., Ji H.X., Ju H.X. Analytical Chemistry 2010, 82:5511-5517.
8. Dong H.F., Zhang J., Ju H.X., Lu H.T., Wang S.Y., Jin S., Hao K.H., Du H.W., Zhang X.J. Analytical Chemistry 2012, 84:4587-4593.
9. Dong H.F., Jin S., Ju H.X., Hao K.H., Xu L.P., Lu H.T., Zhang X.J. Analytical Chemistry 2012, 84:8670-8676.
10. Duan H.W., Nie S.M. Journal of the American Chemical Society 2007, 129:2412-2413.
11. Dyadyusha L., Yin H., Jaiswal S., Brown T., Baumberg J.J., Booy F.P., Melvin T. Chemical Communications 2005, 25:3201-3203.
12. Elisabeth G.G., Patrick O.J., Anthony G., Dave B., Deborah K.F. Advanced Materials 2008, 20:279-283.
13. Garrison J.C., Youngs W.J. Chemical Reviews 2005, 105:3978-4008.
14. Guo C.L., Joseph I. Analytical Chemistry 2011, 83:2883-2889.
15. Guo W.W., Yuan J.P., Wang E.K. Chemical Communications 2009, 3395-3397.
16. He L.G., Hannon J. Nature Reviews Genetics 2004, 5:522-531.
17. Huy D.G., Zhang M., Zuo P., Ye B.C. Analyst 2011, 136:3289-3294.
18. Jay C., Nemunaitis J., Chen P., Fulgham P., Tong A.W. Cell Biology 2007, 26:293-300.
19. Jeffrey S.S. Nature Biotechnology 2008, 26:400-401.
20. Kumar M.S., Lu J., Mercer K.L., Golub T.R., Jacks T. Nature Genetics 2007, 39:673-677.
21. Lee K., Maisel K., Rouillard J., Gulari E., Kim J. Chemistry of Materials 2008, 20:2848-2850.
22. Lewis B.P., Burge C.B., Bartel D.P. Cell 2005, 120(1):15-20.
23. Li J.J., Geyer R., Tan W.H. Nucleic Acids Research 2000, 28:e52.
24. Liu Y.Q., Zhang M., Yin B.C., Ye B.C. Analytical Chemistry 2012, 84:5165-5169.
25. Lu J., Getz G., Miska E.A., Alvarez-Saavedra E., Lamb J., Peck D., Sweet-Cordero, Mallory A.C., Vaucheret H. Nature Genetics 2006, 38(Suppl 1):S31-S36.
26. Mallory, A.C., Vaucheret, H., Nat. Genet. 2006, 38 (Suppl 1), S31-S36.
27. Marras S.A.E. Methods in Molecular Biology 2006, 335:3-16.
28. Nelson P.T., Baldwin D.A., Scearce L.M., Oberholtzer J.C., Tobias J.W., Mourelatos Z. Nature Methods 2004, 1:155-161.
29. Nguyen B.T., Anslyn E.V. Coordination Chemistry Reviews 2006, 250:3118-3127.
30. Oh, E., Hong, M.Y., Lee, D., Nam, S.H., Yoon, H.C., Kim, H.S., 2005. Journal of the American Chemical Society127, 3270-3271.
31. Pall G.S., Codony-Servat C., Byrne C.J., Ritchie L., Hamilton A. Nucleic Acids Research 2007, 35(8):e60.
32. Pasquinelli A.E., Hunter S., Bracht J. Current Opinion in Genetics & Development 2005, 15:200-205.
33. Jeffrey T.P., Story S.P., Juarez S., Votto S.S., Herbst A.G., Degtyareva N.N., Sengupta B. Analytical Chemistry 2012, 84:356-364.
34. Petty Jeffrey T., Sengupta B., Story S.P., Degtyareva N.N. Analytical Chemistry 2011, 83:5957-5964.
35. Plasterk R.H. Cell 2006, 124:877-881.
36. Rao T.U.B., Pradeep T. Angewandte Chemie International Edition 2010, 49:3925-3929.
37. Rodríguez-Sánchez M.L., José R.M., Blanco M.C., José R., López Quintela M.A. Journal of Physical Chemistry 2005, 109:1183-1191.
38. Sokol D.L., Zhang X., Lu P., Gewirtz A.M. Proceedings of the National Academy of Sciences of the United States of America 1998, 95:11538-11543.
39. Tang Z.W., Wang K.M., Tan W.H., Ma C.B., Li J., Liu L.F., Guo Q.P., Meng X.X. Nucleic Acids Research 2005, 33:e97.
40. Thumu B.R., Bodappa N., Thalappil P. Journal of the American Chemical Society 2010, 132:16304.
41. Tricoli J.V., Jacobson J.W. Cancer Research 2007, 67:4553-4555.
42. Tyaji S., Kramer F.R. Nature Biotechnology 1996, 14:303-308.
43. Wark A.W., Lee H.J., Corn R.M. Angewandte Chemie International Edition 2008, 47:644-652.
44. Wang K.M., Tang Z.W., Yang C.Y.J., Kim Y.M., Fang X.H., Li W., Wu Y.R., Medley C.D., Cao Z.H., Li J., Colon P., Lin H., Tan W.H. Angewandte Chemie International Edition 2009, 48:856-870.
45. Wang Y.X., Li J.S., Wang H., Jin J.Y., Liu J.H., Wang K., Tan M., Yang W.H., R.H Analytical Chemistry 2010, 82:6607-6612.
46. Wipf P., Venkatraman S., Miller C.P., Geib S.J. Angewandte Chemie International Edition 1994, 106:1554-1556.
47. Ye B.C., Yin B.C. Angewandte Chemie International Edition 2008, 47:8386-8389.
48. Yeh H.C., Sharma J., Han J.J., Martinez J.S., Werner J.H. Nano Letters 2010, 10:3106-3311.
49. Zhang M., Le H.N., Jiang X.Q., Ye B.C. Chemical Communications 2013, 49:2133-2135.
50. Zhao B., Liu Z.R., Liu Z.L., Liu G.X., Li Z., Wang J.X., Dong X.T. Electrochemistry Communications 2009, 11:1707-1710.
51. Zheng J., Nicovich P.R., Dickson R.M. Annual Review of Physical Chemistry 2007, 58(409):409-431.