Improvement of L-arabinose fermentation by modifying the metabolic pathway and transport in Saccharomyces cerevisiae

BioMed Research International

Volumn 2013, Issue , 2013, Pages

  Wang, Chengqiang ^a   Shen, Yu ^a   Zhang, Yanyan ^a   Suo, Fan ^a   Hou, Jin ^a   Bao, Xiaoming ^a  

^a SHANDONG UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

ALCOHOL; ARABINOSE; TRANSCRIPTION FACTOR TAL1; GLUCOSE;

ARTICLE; ENZYME METABOLISM; FERMENTATION; FUNGUS GROWTH; GENE EXPRESSION; LACTOBACILLUS PLANTARUM; METABOLIC CAPACITY; NONHUMAN; SACCHAROMYCES CEREVISIAE; CHEMISTRY; GENETICS; METABOLIC ENGINEERING; METABOLISM; SYNTHESIS; TRANSPORT AT THE CELLULAR LEVEL;

ARABINOSE; BIOLOGICAL TRANSPORT; ETHANOL; FERMENTATION; GLUCOSE; LACTOBACILLUS PLANTARUM; METABOLIC ENGINEERING; METABOLIC NETWORKS AND PATHWAYS; SACCHAROMYCES CEREVISIAE;

EID: 84886468735     PISSN: 23146133     EISSN: 23146141     Source Type: Journal    
DOI: 10.1155/2013/461204     Document Type: Article

References (30)

1. den Haan R., Kroukamp H., Mert M., Bloom M., Görgens J. F., van Zyl W. H., Engineering Saccharomyces cerevisiae for next generation ethanol production. Journal of Chemical Technology & Biotechnology 2013 88 6 983 991
2. Mabee W. E., Policy options to support biofuel production. Advances in Biochemical Engineering/Biotechnology 2007 108 329 357 2-s2.0-34548732592 10.1007/10-2007-059 (Pubitemid 47434551)
3. Farrell A. E., Plevin R. J., Turner B. T., Jones A. D., O'Hare M., Kammen D. M., Ethanol can contribute to energy and environmental goals. Science 2006 311 5760 506 508 2-s2.0-31544462628 10.1126/science.1121416 (Pubitemid 43157725)
4. Hahn-Hägerdal B., Galbe M., Gorwa-Grauslund M. F., Lidén G., Zacchi G., Bio-ethanol-the fuel of tomorrow from the residues of today. Trends in Biotechnology 2006 24 12 549 556 2-s2.0-33751208021 10.1016/j.tibtech.2006. 10.004 (Pubitemid 44781248)
5. Galbe M., Zacchi G., A review of the production of ethanol from softwood. Applied Microbiology and Biotechnology 2002 59 6 618 628 2-s2.0-0036385526 10.1007/s00253-002-1058-9
6. Kim S. R., Ha S., Wei N., Oh E. J., Jin Y., Simultaneous co-fermentation of mixed sugars: a promising strategy for producing cellulosic ethanol. Trends in Biotechnology 2012 30 5 274 282 2-s2.0-84859945280 10.1016/j.tibtech.2012.01. 005
7. Seiboth B., Metz B., Fungal arabinan and L-arabinose metabolism. Applied Microbiology and Biotechnology 2011 89 6 1665 1673 2-s2.0-79952573627 10.1007/s00253-010-3071-8
8. Wisselink H. W., Toirkens M. J., Berriel M. D. R. F., Winkler A. A., van Dijken J. P., Pronk J. T., van Maris A. J. A., Engineering of Saccharomyces cerevisiae for efficient anaerobic alcoholic fermentation of L-arabinose. Applied and Environmental Microbiology 2007 73 15 4881 4891 2-s2.0-34547752339 10.1128/AEM.00177-07 (Pubitemid 47237237)
9. Hahn-Hägerdal B., Karhumaa K., Jeppsson M., Gorwa-Grauslund M. F., Metabolic engineering for pentose utilization in Saccharomyces cerevisiae. Advances in Biochemical Engineering/Biotechnology 2007 108 147 177 2-s2.0-34548789083 10.1007/10-2007-062 (Pubitemid 47434545)
10. Schleif R., Regulation of the L-arabinose operon of Escherichia coli. Trends in Genetics 2000 16 12 559 565 2-s2.0-0034564982 10.1016/S0168-9525(00) 02153-3
11. Fonseca C., Romão R., de Sousa H. R., Hahn-Hägerdal B., Spencer-Martins I., L-arabinose transport and catabolism in yeast. FEBS Journal 2007 274 14 3589 3600 2-s2.0-34447310554 10.1111/j.1742-4658.2007.05892.x (Pubitemid 47052398)
12. Bettiga M., Bengtsson O., Hahn-Hägerdal B., Gorwa-Grauslund M. F., Arabinose and xylose fermentation by recombinant Saccharomyces cerevisiae expressing a fungal pentose utilization pathway. Microbial Cell Factories 2009 8, article 40 2-s2.0-68949213819 10.1186/1475-2859-8-40
13. Becker J., Boles E., A modified Saccharomyces cerevisiae strain that consumes L-arabinose and produces ethanol. Applied and Environmental Microbiology 2003 69 7 4144 4150 2-s2.0-0037962155 10.1128/AEM.69.7.4144-4150. 2003 (Pubitemid 36873782)
14. Sedlak M., Ho N. W. Y., Expression of E. coli araBAD operon encoding enzymes for metabolizing L-arabinose in Saccharomyces cerevisiae. Enzyme and Microbial Technology 2001 28 1 16 24 2-s2.0-0035793151 10.1016/S0141-0229(00) 00282-9
15. Wiedemann B., Boles E., Codon-optimized bacterial genes improve L-arabinose fermentation in recombinant Saccharomyces cerevisiae. Applied and Environmental Microbiology 2008 74 7 2043 2050 2-s2.0-42049123423 10.1128/AEM.02395-07 (Pubitemid 351522057)
16. Wisselink H. W., Cipollina C., Oud B., Crimi B., Heijnen J. J., Pronk J. T., van Maris A. J. A., Metabolome, transcriptome and metabolic flux analysis of arabinose fermentation by engineered Saccharomyces cerevisiae. Metabolic Engineering 2010 12 6 537 551 2-s2.0-78049451371 10.1016/j.ymben.2010.08.003
17. Entian K. D., Kötter P., Alistair J. P. B., Mick T., 23 yeast mutant and plasmid collections. Methods in Microbiology 1998 New York, NY, USA Academic Press 431 449
18. Güldener U., Heck S., Fiedler T., Beinhauer J., Hegemann J. H., A new efficient gene disruption cassette for repeated use in budding yeast. Nucleic Acids Research 1996 24 13 2519 2524 2-s2.0-0029994841 10.1093/nar/24.13.2519 (Pubitemid 26237149)
19. Peng B., Shen Y., Li X., Chen X., Hou J., Bao X., Improvement of xylose fermentation in respiratory-deficient xylose-fermenting Saccharomyces cerevisiae. Metabolic Engineering 2012 14 1 9 18 2-s2.0-84855419323 10.1016/j.ymben.2011.12.001
20. Walfridsson M., Anderlund M., Bao X., Hahn-Hägerdal B., Expression of different levels of enzymes from the Pichia stipitis XYL1 and XYL2 genes in Saccharomyces cerevisiae and its effects on product formation during xylose utilisation. Applied Microbiology and Biotechnology 1997 48 2 218 224 2-s2.0-0030772483 10.1007/s002530051041 (Pubitemid 27394753)
21. Struhl K., Stinchcomb D. T., Scherer S., Davis R. W., High-frequency transformation of yeast: autonomous replication of hybrid DNA molecules. Proceedings of the National Academy of Sciences of the United States of America 1979 76 3 1035 1039 2-s2.0-0018449422
22. Liu X., Zhang X., Wang C., Liu L., Lei M., Bao X., Genetic and comparative transcriptome analysis of bromodomain factor 1 in the salt stress response of Saccharomyces cerevisiae. Current Microbiology 2007 54 4 325 330 2-s2.0-33947396806 10.1007/s00284-006-0525-4 (Pubitemid 46452248)
23. Shen Y., Chen X., Peng B., Chen L., Hou J., Bao X., An efficient xylose-fermenting recombinant Saccharomyces cerevisiae strain obtained through adaptive evolution and its global transcription profile. Applied Microbiology and Biotechnology 2012 96 4 1079 1091
24. Sharp P. M., Li W., The codon adaptation index-a measure of directional synonymous codon usage bias, and its potential applications. Nucleic Acids Research 1987 15 3 1281 1295 2-s2.0-0023650543 10.1093/nar/15.3.1281
25. Ji L., Shen Y., Xu L., Peng B., Xiao Y., Bao X., Enhanced resistance of Saccharomyces cerevisiae to vanillin by expression of lacA from Trametes sp. AH28-2. Bioresource Technology 2011 102 17 8105 8109 2-s2.0-79960843079 10.1016/j.biortech.2011.06.057
26. Gietz R. D., Schiestl R. H., Willems A. R., Woods R. A., Studies on the transformation of intact yeast cells by the LiAc/SS-DNA/PEG procedure. Yeast 1995 11 4 355 360 2-s2.0-0028954118 10.1002/yea.320110408
27. Livak K. J., Schmittgen T. D., Analysis of relative gene expression data using real-time quantitative PCR and the 2-ΔΔCT method. Methods 2001 25 4 402 408 2-s2.0-0035710746 10.1006/meth.2001.1262 (Pubitemid 34164012)
28. von Sivers M., Zacchi G., Ethanol from lignocellulosics: a review of the economy. Bioresource Technology 1996 56 2-3 131 140 2-s2.0-0030131606 10.1016/0960-8524(96)00018-1 (Pubitemid 26355509)
29. Wu G., Zheng Y., Qureshi I., Zin H. T., Beck T., Bulka B., Freeland S. J., SGDB: a database of synthetic genes re-designed for optimizing protein over-expression. Nucleic Acids Research 2007 35 supplement 1 D76 D79 2-s2.0-33846105724 10.1093/nar/gkl648 (Pubitemid 46056174)
30. Subtil T., Boles E., Improving L-arabinose utilization of pentose fermenting Saccharomyces cerevisiae cells by heterologous expression of L-arabinose transporting sugar transporters. Biotechnology for Biofuels 2011 4 38 2-s2.0-80053902438 10.1186/1754-6834-4-38