-
1
-
-
84856221968
-
A complex "mRNA degradation code" controls gene expression during animal development
-
Alonso, C.R. (2011) A complex "mRNA degradation code" controls gene expression during animal development. Trends Genet 28, 78-88.
-
(2011)
Trends Genet
, vol.28
, pp. 78-88
-
-
Alonso, C.R.1
-
2
-
-
4644309196
-
The functions of animal microRNAs
-
Ambros, V. (2004) The functions of animal microRNAs. Nature 431, 350-355.
-
(2004)
Nature
, vol.431
, pp. 350-355
-
-
Ambros, V.1
-
3
-
-
77952683165
-
Demystifying phenotypes: the comparative genomics of evo-devo
-
Artieri, C.G., & Singh, R.S. (2010a) Demystifying phenotypes: the comparative genomics of evo-devo. Fly (Austin) 4, 18-20.
-
(2010)
Fly (Austin)
, vol.4
, pp. 18-20
-
-
Artieri, C.G.1
Singh, R.S.2
-
4
-
-
77950454510
-
Molecular evidence for increased regulatory conservation during metamorphosis, and against deleterious cascading effects of hybrid breakdown in Drosophila
-
Artieri, C.G. & Singh, R.S. (2010b) Molecular evidence for increased regulatory conservation during metamorphosis, and against deleterious cascading effects of hybrid breakdown in Drosophila. BMC Biol 8, 26.
-
(2010)
BMC Biol
, vol.8
, pp. 26
-
-
Artieri, C.G.1
Singh, R.S.2
-
5
-
-
68749096120
-
Ontogeny and phylogeny: molecular signatures of selection, constraint, and temporal pleiotropy in the development of Drosophila
-
Artieri, C.G., Haerty, W., & Singh, R.S. (2009) Ontogeny and phylogeny: molecular signatures of selection, constraint, and temporal pleiotropy in the development of Drosophila. BMC Biol 7, 42.
-
(2009)
BMC Biol
, vol.7
, pp. 42
-
-
Artieri, C.G.1
Haerty, W.2
Singh, R.S.3
-
6
-
-
0003455528
-
Drosophila: A Laboratory Handbook
-
Cold Spring Harbor Laboratory Press, Cold Spring Harbor
-
Ashburner, M.A., Golic, K.G., & Hawley, R.S. (2005) Drosophila: A Laboratory Handbook. Cold Spring Harbor Laboratory Press, Cold Spring Harbor.
-
(2005)
-
-
Ashburner, M.A.1
Golic, K.G.2
Hawley, R.S.3
-
7
-
-
34548554082
-
Nup96-dependent hybrid lethality occurs in a subset of species from the simulans clade of Drosophila
-
Barbash, D.A. (2007) Nup96-dependent hybrid lethality occurs in a subset of species from the simulans clade of Drosophila. Genetics 176, 543-552.
-
(2007)
Genetics
, vol.176
, pp. 543-552
-
-
Barbash, D.A.1
-
8
-
-
33847207839
-
Lethality in Drosophila melanogaster/Drosophila simulans species hybrids is not associated with substantial transcriptional misregulation
-
Barbash, D.A., & Lorigan, J.G. (2007) Lethality in Drosophila melanogaster/Drosophila simulans species hybrids is not associated with substantial transcriptional misregulation. J Exp Zool B Mol Dev Evol 308, 74-84.
-
(2007)
J Exp Zool B Mol Dev Evol
, vol.308
, pp. 74-84
-
-
Barbash, D.A.1
Lorigan, J.G.2
-
9
-
-
0037547157
-
A rapidly evolving MYB-related protein causes species isolation in Drosophila
-
Barbash, D.A., Siino, D.F., Tarone, A.M., et al. (2003) A rapidly evolving MYB-related protein causes species isolation in Drosophila. Proc Natl Acad Sci USA 100, 5302-5307.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 5302-5307
-
-
Barbash, D.A.1
Siino, D.F.2
Tarone, A.M.3
-
10
-
-
0347444723
-
MicroRNAs: genomics, biogenesis, mechanism, and function
-
Bartel, D.P. (2004) MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 116, 281-297.
-
(2004)
Cell
, vol.116
, pp. 281-297
-
-
Bartel, D.P.1
-
11
-
-
84933498486
-
Heredity and variation in modern lights
-
In: Darwin and Modern Science (ed. A.C. Seward), pp. 85-101. Cambridge University Press, Cambridge
-
Bateson, W. (1909) Heredity and variation in modern lights. In: Darwin and Modern Science (ed. A.C. Seward), pp. 85-101. Cambridge University Press, Cambridge.
-
(1909)
-
-
Bateson, W.1
-
12
-
-
70450223175
-
Altered heterochromatin binding by a hybrid sterility protein in Drosophila sibling species
-
Bayes, J.J., & Malik, H.S. (2009) Altered heterochromatin binding by a hybrid sterility protein in Drosophila sibling species. Science 326, 1538-1541.
-
(2009)
Science
, vol.326
, pp. 1538-1541
-
-
Bayes, J.J.1
Malik, H.S.2
-
13
-
-
0000974446
-
The bristles of hybrids between Drosophila melanogaster and Drosophila simulans
-
Biddle, R.L. (1932) The bristles of hybrids between Drosophila melanogaster and Drosophila simulans. Genetics 17, 153-174.
-
(1932)
Genetics
, vol.17
, pp. 153-174
-
-
Biddle, R.L.1
-
14
-
-
33751577950
-
Two Dobzhansky-Muller genes interact to cause hybrid lethality in Drosophila
-
Brideau, N.J., Flores, H.A., Wang, J., et al. (2006) Two Dobzhansky-Muller genes interact to cause hybrid lethality in Drosophila. Science 314, 1292-1295.
-
(2006)
Science
, vol.314
, pp. 1292-1295
-
-
Brideau, N.J.1
Flores, H.A.2
Wang, J.3
-
15
-
-
51549109714
-
Gene expression disruptions of organism versus organ in Drosophila species hybrids
-
Catron, D.J., & Noor, M.A. (2008) Gene expression disruptions of organism versus organ in Drosophila species hybrids. PLoS One 3, e3009.
-
(2008)
PLoS One
, vol.3
-
-
Catron, D.J.1
Noor, M.A.2
-
16
-
-
40549119140
-
Drosophila simulans Lethal hybrid rescue mutation (Lhr) rescues inviable hybrids by restoring X chromosomal dosage compensation and causes fluctuating asymmetry of development
-
Chatterjee, R.N., Chatterjee, P., Pal, A., et al. (2007) Drosophila simulans Lethal hybrid rescue mutation (Lhr) rescues inviable hybrids by restoring X chromosomal dosage compensation and causes fluctuating asymmetry of development. J Genet 86, 203-215.
-
(2007)
J Genet
, vol.86
, pp. 203-215
-
-
Chatterjee, R.N.1
Chatterjee, P.2
Pal, A.3
-
17
-
-
3042750437
-
Speciation
-
Sinauer Associates, Inc., Sunderland, MA
-
Coyne, J.A., & Orr, H.A. (2004) Speciation. Sinauer Associates, Inc., Sunderland, MA.
-
(2004)
-
-
Coyne, J.A.1
Orr, H.A.2
-
18
-
-
85143470848
-
The Regulatory Genome: Gene Regulatory Networks in Development and Evolution
-
Academic Press
-
Davidson, E.H. (2006) The Regulatory Genome: Gene Regulatory Networks in Development and Evolution. Academic Press.
-
(2006)
-
-
Davidson, E.H.1
-
19
-
-
0018825985
-
Complex cis-acting regulatory genes demonstrated in Drosophila hybrids
-
Dickinson, W.J. (1980a) Complex cis-acting regulatory genes demonstrated in Drosophila hybrids. Dev Genet 1, 229-240.
-
(1980)
Dev Genet
, vol.1
, pp. 229-240
-
-
Dickinson, W.J.1
-
20
-
-
0019249667
-
Evolution of patterns of gene expression in Hawaiian picture-winged Drosophila
-
Dickinson, W.J. (1980b) Evolution of patterns of gene expression in Hawaiian picture-winged Drosophila. J Mol Evol 16, 73-94.
-
(1980)
J Mol Evol
, vol.16
, pp. 73-94
-
-
Dickinson, W.J.1
-
21
-
-
0018828716
-
Tissue specificity of enzyme expression regulated by diffusible factors: evidence in Drosophila hybrids
-
Dickinson, W.J. (1980c) Tissue specificity of enzyme expression regulated by diffusible factors: evidence in Drosophila hybrids. Science 207, 995-997.
-
(1980)
Science
, vol.207
, pp. 995-997
-
-
Dickinson, W.J.1
-
22
-
-
0018293589
-
Regulation of the tissue specificity of an enzyme by a cis-acting genetic element: evidence from interspecific Drosophila hybrids
-
Dickinson,W.J., & Carson, H.L. (1979) Regulation of the tissue specificity of an enzyme by a cis-acting genetic element: evidence from interspecific Drosophila hybrids. Proc Natl Acad Sci USA 76, 4559-4562.
-
(1979)
Proc Natl Acad Sci USA
, vol.76
, pp. 4559-4562
-
-
Dickinson, W.J.1
Carson, H.L.2
-
23
-
-
84966148444
-
Regulatory gene evolution: adaptive differences in expression of alcohol dehydrogenase in Drosophila melanogaster and Drosophila simulans
-
Dickinson, W.J., Rowan, R.G., & Brennan, M.D. (1984) Regulatory gene evolution: adaptive differences in expression of alcohol dehydrogenase in Drosophila melanogaster and Drosophila simulans. Heredity 52 (Pt 2), 215-225.
-
(1984)
Heredity
, vol.52
, Issue.PT 2
, pp. 215-225
-
-
Dickinson, W.J.1
Rowan, R.G.2
Brennan, M.D.3
-
24
-
-
0003792794
-
Genetics and the Origin of Species
-
Columbia University Press, New York
-
Dobzhansky, T. (1937) Genetics and the Origin of Species. Columbia University Press, New York.
-
(1937)
-
-
Dobzhansky, T.1
-
25
-
-
62449228052
-
Genetic changes accompanying the evolution of host specialization in Drosophila sechellia
-
Dworkin, I., & Jones, C.D. (2009) Genetic changes accompanying the evolution of host specialization in Drosophila sechellia. Genetics 181, 721-736.
-
(2009)
Genetics
, vol.181
, pp. 721-736
-
-
Dworkin, I.1
Jones, C.D.2
-
26
-
-
34548013932
-
The evolution of sex-biased genes and sex-biased gene expression
-
Ellegren, H., & Parsch, J. (2007) The evolution of sex-biased genes and sex-biased gene expression. Nat Rev Genet 8, 689-698.
-
(2007)
Nat Rev Genet
, vol.8
, pp. 689-698
-
-
Ellegren, H.1
Parsch, J.2
-
27
-
-
77951902699
-
Key considerations for measuring allelic expression on a genomic scale using high-throughput sequencing
-
Fontanillas, P., Landry, C.R., Wittkopp, P.J., et al. (2010) Key considerations for measuring allelic expression on a genomic scale using high-throughput sequencing. Mol Ecol 19 (Suppl 1), 212-227.
-
(2010)
Mol Ecol
, vol.19
, Issue.SUPPL. 1
, pp. 212-227
-
-
Fontanillas, P.1
Landry, C.R.2
Wittkopp, P.J.3
-
28
-
-
19844365733
-
Multi-species microarrays reveal the effect of sequence divergence on gene expression profiles
-
Gilad, Y., Rifkin, S.A., Bertone, P., et al. (2005) Multi-species microarrays reveal the effect of sequence divergence on gene expression profiles. Genome Res 15, 674-680.
-
(2005)
Genome Res
, vol.15
, pp. 674-680
-
-
Gilad, Y.1
Rifkin, S.A.2
Bertone, P.3
-
29
-
-
33644855479
-
Expression profiling in primates reveals a rapid evolution of human transcription factors
-
Gilad, Y., Oshlack, A., Smyth, G.K., et al. (2006) Expression profiling in primates reveals a rapid evolution of human transcription factors. Nature 440, 242-245.
-
(2006)
Nature
, vol.440
, pp. 242-245
-
-
Gilad, Y.1
Oshlack, A.2
Smyth, G.K.3
-
30
-
-
70649107892
-
Regulatory divergence in Drosophila melanogaster and D
-
Graze, R.M., McIntyre, L.M., Main, B.J., et al. (2009) Regulatory divergence in Drosophila melanogaster and D. simulans, a genomewide analysis of allele-specific expression. Genetics 183, 547-561.
-
(2009)
simulans, a genomewide analysis of allele-specific expression. Genetics
, vol.183
, pp. 547-561
-
-
Graze, R.M.1
McIntyre, L.M.2
Main, B.J.3
-
31
-
-
84861365328
-
Allelic imbalance in Drosophila hybrid heads: exons, isoforms, and evolution
-
doi: 10.1093/molbev/msr1318
-
Graze, R.M., Novelo, L.L., Amin, V., et al. (2012) Allelic imbalance in Drosophila hybrid heads: exons, isoforms, and evolution. Mol Biol Evol. doi: 10.1093/molbev/msr1318.
-
(2012)
Mol Biol Evol
-
-
Graze, R.M.1
Novelo, L.L.2
Amin, V.3
-
32
-
-
77955147087
-
Fragile regions and not functional constraints predominate in shaping gene organization in the genus Drosophila
-
von Grotthuss, M., Ashburner, M., & Ranz, J.M. (2010) Fragile regions and not functional constraints predominate in shaping gene organization in the genus Drosophila. Genome Res 20, 1084-1096.
-
(2010)
Genome Res
, vol.20
, pp. 1084-1096
-
-
Von Grotthuss, M.1
Ashburner, M.2
Ranz, J.M.3
-
33
-
-
77952231080
-
Advancing RNA-seq analysis
-
Haas, B.J., & Zody, M.C. (2010) Advancing RNA-seq analysis. Nat Biotechnol 28, 421-423.
-
(2010)
Nat Biotechnol
, vol.28
, pp. 421-423
-
-
Haas, B.J.1
Zody, M.C.2
-
34
-
-
33748175440
-
Gene regulation divergence is a major contributor to the evolution of Dobzhansky-Muller incompatibilities between species of Drosophila
-
Haerty, W., & Singh, R.S. (2006) Gene regulation divergence is a major contributor to the evolution of Dobzhansky-Muller incompatibilities between species of Drosophila. Mol Biol Evol 23, 1707-1714.
-
(2006)
Mol Biol Evol
, vol.23
, pp. 1707-1714
-
-
Haerty, W.1
Singh, R.S.2
-
35
-
-
37249039910
-
Evolution in the fast lane: rapidly evolving sex-related genes in Drosophila
-
Haerty, W., Jagadeeshan, S., Kulathinal, R.J., et al. (2007) Evolution in the fast lane: rapidly evolving sex-related genes in Drosophila. Genetics 177, 1321-1335.
-
(2007)
Genetics
, vol.177
, pp. 1321-1335
-
-
Haerty, W.1
Jagadeeshan, S.2
Kulathinal, R.J.3
-
36
-
-
77955379360
-
Sex ratio and unisexual sterility in animal hybrids
-
Haldane, J.B.S. (1922) Sex ratio and unisexual sterility in animal hybrids. J Genet. 12, 101-109.
-
(1922)
J Genet.
, vol.12
, pp. 101-109
-
-
Haldane, J.B.S.1
-
37
-
-
0037905413
-
Expression of enhancers is altered in Drosophila melanogaster hybrids
-
Hammerle, B., & Ferrus, A. (2003) Expression of enhancers is altered in Drosophila melanogaster hybrids. Evol Dev 5, 221-230.
-
(2003)
Evol Dev
, vol.5
, pp. 221-230
-
-
Hammerle, B.1
Ferrus, A.2
-
38
-
-
84858794348
-
The evolution of gene expression and the transcriptome-phenotype relationship
-
Harrison, P.W., Wright, A.E., & Mank, J.E. (2012) The evolution of gene expression and the transcriptome-phenotype relationship. Semin Cell Dev Biol 23, 222-229.
-
(2012)
Semin Cell Dev Biol
, vol.23
, pp. 222-229
-
-
Harrison, P.W.1
Wright, A.E.2
Mank, J.E.3
-
39
-
-
77958127781
-
Functional regulatory divergence of the innate immune system in interspecific Drosophila hybrids
-
Hill-Burns, E.M., & Clark, A.G. (2011) Functional regulatory divergence of the innate immune system in interspecific Drosophila hybrids. Mol Biol Evol 27, 2596-2605.
-
(2011)
Mol Biol Evol
, vol.27
, pp. 2596-2605
-
-
Hill-Burns, E.M.1
Clark, A.G.2
-
40
-
-
60149090021
-
The many pathways of RNA degradation
-
Houseley, J., & Tollervey, D. (2009) The many pathways of RNA degradation. Cell 136, 763-776.
-
(2009)
Cell
, vol.136
, pp. 763-776
-
-
Houseley, J.1
Tollervey, D.2
-
41
-
-
0023225168
-
Genetic rescue of inviable hybrids between Drosophila melanogaster and its sibling species
-
Hutter, P., & Ashburner, M. (1987) Genetic rescue of inviable hybrids between Drosophila melanogaster and its sibling species. Nature 327, 331-333.
-
(1987)
Nature
, vol.327
, pp. 331-333
-
-
Hutter, P.1
Ashburner, M.2
-
42
-
-
79955982964
-
Experimental evidence supports a sex-specific selective sieve in mitochondrial genome evolution
-
Innocenti, P., Morrow, E.H.,&Dowling, D.K. (2011) Experimental evidence supports a sex-specific selective sieve in mitochondrial genome evolution. Science 332, 845-848.
-
(2011)
Science
, vol.332
, pp. 845-848
-
-
Innocenti, P.1
Morrow, E.H.2
Dowling, D.K.3
-
43
-
-
39749184167
-
The evolution of gene regulation underlies a morphological difference between two Drosophila sister species
-
Jeong, S., Rebeiz, M., Andolfatto, P., et al. (2008) The evolution of gene regulation underlies a morphological difference between two Drosophila sister species. Cell 132, 783-793.
-
(2008)
Cell
, vol.132
, pp. 783-793
-
-
Jeong, S.1
Rebeiz, M.2
Andolfatto, P.3
-
44
-
-
72449139061
-
Evolution of sex-dependent gene expression in three recently diverged species of Drosophila
-
Jiang, Z-F., & Machado, C.A. (2009) Evolution of sex-dependent gene expression in three recently diverged species of Drosophila. Genetics 183, 1175-1185.
-
(2009)
Genetics
, vol.183
, pp. 1175-1185
-
-
Jiang, Z.-F.1
Machado, C.A.2
-
45
-
-
79952842474
-
Enrichment of mRNA-like non-coding RNAs in the divergence of Drosophila males
-
Jiang, Z.-F., Croshaw, D.A., Wang, Y., et al. (2011) Enrichment of mRNA-like non-coding RNAs in the divergence of Drosophila males. Mol Biol Evol 28, 1339-1348.
-
(2011)
Mol Biol Evol
, vol.28
, pp. 1339-1348
-
-
Jiang, Z.-F.1
Croshaw, D.A.2
Wang, Y.3
-
46
-
-
0034699110
-
Rapid speciation via parallel, directional selection on regulatory genetic pathways
-
Johnson, N.A., & Porter, A.H. (2000) Rapid speciation via parallel, directional selection on regulatory genetic pathways. J Theor Biol 205, 527-542.
-
(2000)
J Theor Biol
, vol.205
, pp. 527-542
-
-
Johnson, N.A.1
Porter, A.H.2
-
47
-
-
33845665237
-
Evolution of branched regulatory genetic pathways: directional selection on pleiotropic loci accelerates developmental system drift
-
Johnson, N.A., & Porter, A.H. (2007) Evolution of branched regulatory genetic pathways: directional selection on pleiotropic loci accelerates developmental system drift. Genetica 129, 57-70.
-
(2007)
Genetica
, vol.129
, pp. 57-70
-
-
Johnson, N.A.1
Porter, A.H.2
-
48
-
-
77952734936
-
High-throughput DNA sequencing-concepts and limitations
-
Kircher, M., & Kelso, J. (2010) High-throughput DNA sequencing-concepts and limitations. Bioessays 32, 524-536.
-
(2010)
Bioessays
, vol.32
, pp. 524-536
-
-
Kircher, M.1
Kelso, J.2
-
49
-
-
0042968976
-
The power of the 3' UTR: translational control and development
-
Kuersten, S., & Goodwin, E.B. (2003) The power of the 3' UTR: translational control and development. Nat Rev Genet 4, 626-637.
-
(2003)
Nat Rev Genet
, vol.4
, pp. 626-637
-
-
Kuersten, S.1
Goodwin, E.B.2
-
50
-
-
0242550723
-
A Dnmt2-like protein mediates DNA methylation in Drosophila
-
Kunert, N., Marhold, J., Stanke, J., et al. (2003) A Dnmt2-like protein mediates DNA methylation in Drosophila. Development 130, 5083-5090.
-
(2003)
Development
, vol.130
, pp. 5083-5090
-
-
Kunert, N.1
Marhold, J.2
Stanke, J.3
-
51
-
-
33645131133
-
Compensatory cis-trans evolution and the dysregulation of gene expression in interspecific hybrids of Drosophila
-
Landry, C.R.,Wittkopp, P.J., Taubes, C.H., et al. (2005) Compensatory cis-trans evolution and the dysregulation of gene expression in interspecific hybrids of Drosophila. Genetics 171, 1813-1822.
-
(2005)
Genetics
, vol.171
, pp. 1813-1822
-
-
Landry, C.R.1
Wittkopp, P.J.2
Taubes, C.H.3
-
52
-
-
37849044967
-
Polymorphic Y chromosomes harbor cryptic variation with manifold functional consequences
-
Lemos, B., Araripe, L.O., & Hartl, D.L. (2008) Polymorphic Y chromosomes harbor cryptic variation with manifold functional consequences. Science 319, 91-93.
-
(2008)
Science
, vol.319
, pp. 91-93
-
-
Lemos, B.1
Araripe, L.O.2
Hartl, D.L.3
-
53
-
-
0037819447
-
Transcription regulation and animal diversity
-
Levine, M., & Tjian, R. (2003) Transcription regulation and animal diversity. Nature 424, 147-151.
-
(2003)
Nature
, vol.424
, pp. 147-151
-
-
Levine, M.1
Tjian, R.2
-
54
-
-
79955123481
-
Lewin's Genes X
-
Jones and Bartlett, Sudbury, MA
-
Lewin, B., Krebs, J.E., Goldstein, E.S., et al. (2011) Lewin's Genes X. Jones and Bartlett, Sudbury, MA.
-
(2011)
-
-
Lewin, B.1
Krebs, J.E.2
Goldstein, E.S.3
-
55
-
-
77955134372
-
Genome-wide misexpression of X-linked versus autosomal genes associated with hybrid male sterility
-
Lu, X., Shapiro, J.A., Ting, C.T., et al. (2010) Genome-wide misexpression of X-linked versus autosomal genes associated with hybrid male sterility. Genome Res 20, 1097-1102.
-
(2010)
Genome Res
, vol.20
, pp. 1097-1102
-
-
Lu, X.1
Shapiro, J.A.2
Ting, C.T.3
-
56
-
-
79953061203
-
Insects as innovative models for functional studies of DNA methylation
-
Lyko, F., & Maleszka, R. (2011) Insects as innovative models for functional studies of DNA methylation. Trends Genet 27, 127-131.
-
(2011)
Trends Genet
, vol.27
, pp. 127-131
-
-
Lyko, F.1
Maleszka, R.2
-
57
-
-
0034735780
-
DNA methylation in Drosophila melanogaster
-
Lyko, F., Ramsahoye, B.H., & Jaenisch, R. (2000) DNA methylation in Drosophila melanogaster. Nature 408, 538-540.
-
(2000)
Nature
, vol.408
, pp. 538-540
-
-
Lyko, F.1
Ramsahoye, B.H.2
Jaenisch, R.3
-
58
-
-
85144477392
-
Drosophila: A Guide to Species Identification and Use
-
Elsevier, Chennai
-
Markow, T.A., & O'Grady, P.M. (2005) Drosophila: A Guide to Species Identification and Use. Elsevier, Chennai.
-
(2005)
-
-
Markow, T.A.1
O'Grady, P.M.2
-
59
-
-
23944483135
-
Post-transcriptional control of gene expression: a genome-wide perspective
-
Mata, J., Marguerat, S., & Bahler, J. (2005) Post-transcriptional control of gene expression: a genome-wide perspective. Trends Biochem Sci 30, 506-514.
-
(2005)
Trends Biochem Sci
, vol.30
, pp. 506-514
-
-
Mata, J.1
Marguerat, S.2
Bahler, J.3
-
60
-
-
77953010033
-
Regulatory divergence in Drosophila revealed by mRNA-seq
-
McManus, C.J., Coolon, J.D., Duff, M.O., et al. (2010) Regulatory divergence in Drosophila revealed by mRNA-seq. Genome Res 20, 816-825.
-
(2010)
Genome Res
, vol.20
, pp. 816-825
-
-
McManus, C.J.1
Coolon, J.D.2
Duff, M.O.3
-
61
-
-
0042692890
-
Rapid evolution of male-biased gene expression in Drosophila
-
Meiklejohn, C.D., Parsch, J., Ranz, J.M., et al. (2003) Rapid evolution of male-biased gene expression in Drosophila. Proc Natl Acad Sci USA 100, 9894-9899.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 9894-9899
-
-
Meiklejohn, C.D.1
Parsch, J.2
Ranz, J.M.3
-
62
-
-
40849094620
-
Coordinated evolution of co-expressed gene clusters in the Drosophila transcriptome
-
Mezey, J.G., Nuzhdin, S.V.,Ye, F., et al. (2008) Coordinated evolution of co-expressed gene clusters in the Drosophila transcriptome. BMC Evol Biol 8, 2.
-
(2008)
BMC Evol Biol
, vol.8
, pp. 2
-
-
Mezey, J.G.1
Nuzhdin, S.V.2
Ye, F.3
-
63
-
-
0038420716
-
Genome-wide patterns of expression in Drosophila pure species and hybrid males
-
Michalak, P., & Noor, M.A. (2003) Genome-wide patterns of expression in Drosophila pure species and hybrid males. Mol Biol Evol 20, 1070-1076.
-
(2003)
Mol Biol Evol
, vol.20
, pp. 1070-1076
-
-
Michalak, P.1
Noor, M.A.2
-
64
-
-
4344651020
-
Association of misexpression with sterility in hybrids of Drosophila simulans and D
-
Michalak, P.,&Noor, M.A. (2004) Association of misexpression with sterility in hybrids of Drosophila simulans and D. mauritiana. J Mol Evol 59, 277-282.
-
(2004)
mauritiana. J Mol Evol
, vol.59
, pp. 277-282
-
-
Michalak, P.1
Noor, M.A.2
-
65
-
-
0036207282
-
Untranslated regions of mRNAs
-
REVIEWS0004
-
Mignone, F., Gissi, C., Liuni, S., et al. (2002) Untranslated regions of mRNAs. Genome Biol 3, REVIEWS0004.
-
(2002)
Genome Biol
, vol.3
-
-
Mignone, F.1
Gissi, C.2
Liuni, S.3
-
66
-
-
0002636459
-
Annotation of the Drosophila melanogaster euchromatic genome: a systematic review
-
RESEARCH0083
-
Misra, S., Crosby, M.A., Mungall, C.J., et al. (2002) Annotation of the Drosophila melanogaster euchromatic genome: a systematic review. Genome Biol 3, RESEARCH0083.
-
(2002)
Genome Biol
, vol.3
-
-
Misra, S.1
Crosby, M.A.2
Mungall, C.J.3
-
67
-
-
33845889502
-
Genome-wide patterns of expression in Drosophila pure species and hybrid males
-
Moehring, A.J., Teeter, K.C., & Noor, M.A. (2007) Genome-wide patterns of expression in Drosophila pure species and hybrid males. II. Examination of multiple-species hybridizations, platforms, and life cycle stages. Mol Biol Evol 24, 137-145.
-
(2007)
II. Examination of multiple-species hybridizations, platforms, and life cycle stages. Mol Biol Evol
, vol.24
, pp. 137-145
-
-
Moehring, A.J.1
Teeter, K.C.2
Noor, M.A.3
-
68
-
-
46249106990
-
Mapping and quantifying mammalian transcriptomes by RNA-seq
-
Mortazavi, A., Williams, B.A., McCue, K., et al. (2008) Mapping and quantifying mammalian transcriptomes by RNA-seq. Nat Methods 5, 621-628.
-
(2008)
Nat Methods
, vol.5
, pp. 621-628
-
-
Mortazavi, A.1
Williams, B.A.2
McCue, K.3
-
69
-
-
0003470749
-
Bearings of the Drosophila work on systematics
-
In: The New Systematics (ed. J. Huxley), pp. 185-268. Clarendon Press, Oxford
-
Muller, H.J. (1940) Bearings of the Drosophila work on systematics. In: The New Systematics (ed. J. Huxley), pp. 185-268. Clarendon Press, Oxford.
-
(1940)
-
-
Muller, H.J.1
-
70
-
-
84886318353
-
Isozyme polymorphism due to regulatory influence
-
Nair, P.S., Carson, H.L., & Sene, F.M. (1977) Isozyme polymorphism due to regulatory influence. Am Nat 111, 789-791.
-
(1977)
Am Nat
, vol.111
, pp. 789-791
-
-
Nair, P.S.1
Carson, H.L.2
Sene, F.M.3
-
71
-
-
22144491143
-
Patterns of evolution of genes disrupted in expression in Drosophila species hybrids
-
Noor, M.A. (2005) Patterns of evolution of genes disrupted in expression in Drosophila species hybrids. Genet Res 85, 119-125.
-
(2005)
Genet Res
, vol.85
, pp. 119-125
-
-
Noor, M.A.1
-
72
-
-
0346731275
-
Characterization of a male-predominant antisense transcript underexpressed in hybrids of Drosophila pseudoobscura and D
-
Noor, M.A., Michalak, P., & Donze, D. (2003) Characterization of a male-predominant antisense transcript underexpressed in hybrids of Drosophila pseudoobscura and D. persimilis. Genetics 165, 1823-1830.
-
(2003)
persimilis. Genetics
, vol.165
, pp. 1823-1830
-
-
Noor, M.A.1
Michalak, P.2
Donze, D.3
-
73
-
-
0034920057
-
The evolution of postzygotic isolation: accumulating Dobzhansky-Muller incompatibilities
-
Orr, H.A., & Turelli, M. (2001) The evolution of postzygotic isolation: accumulating Dobzhansky-Muller incompatibilities. Evolution 55, 1085-1094.
-
(2001)
Evolution
, vol.55
, pp. 1085-1094
-
-
Orr, H.A.1
Turelli, M.2
-
74
-
-
33751307198
-
Misregulation of sex-lethal and disruption of male-specific lethal complex localization in Drosophila species hybrids
-
Pal Bhadra, M., Bhadra, U., & Birchler, J.A. (2006) Misregulation of sex-lethal and disruption of male-specific lethal complex localization in Drosophila species hybrids. Genetics 174, 1151-1159.
-
(2006)
Genetics
, vol.174
, pp. 1151-1159
-
-
Pal Bhadra, M.1
Bhadra, U.2
Birchler, J.A.3
-
75
-
-
58849131469
-
Dynamics of hybrid incompatibility in gene networks in a constant environment
-
Palmer, M.E., & Feldman, M.W. (2009) Dynamics of hybrid incompatibility in gene networks in a constant environment. Evolution 63, 418-431.
-
(2009)
Evolution
, vol.63
, pp. 418-431
-
-
Palmer, M.E.1
Feldman, M.W.2
-
76
-
-
4844222675
-
A survey of ovary-, testis-, and soma-biased gene expression in Drosophila melanogaster adults
-
Parisi, M., Nuttall, R., Edwards, P., et al. (2004) A survey of ovary-, testis-, and soma-biased gene expression in Drosophila melanogaster adults. Genome Biol 5, R40.
-
(2004)
Genome Biol
, vol.5
-
-
Parisi, M.1
Nuttall, R.2
Edwards, P.3
-
77
-
-
58449091818
-
A single gene causes both male sterility and segregation distortion in Drosophila hybrids
-
Phadnis, N., & Orr, H.A. (2009) A single gene causes both male sterility and segregation distortion in Drosophila hybrids. Science 323, 376-379.
-
(2009)
Science
, vol.323
, pp. 376-379
-
-
Phadnis, N.1
Orr, H.A.2
-
78
-
-
29244468298
-
Uncovering evolutionary patterns of gene expression using microarrays
-
Ranz, J.M., & Machado, C.A. (2006) Uncovering evolutionary patterns of gene expression using microarrays. Trends Ecol Evol 21, 29-37.
-
(2006)
Trends Ecol Evol
, vol.21
, pp. 29-37
-
-
Ranz, J.M.1
Machado, C.A.2
-
79
-
-
0037504137
-
Sex-dependent gene expression and evolution of the Drosophila transcriptome
-
Ranz, J.M., Castillo-Davis, C.I., Meiklejohn, C.D., et al. (2003) Sex-dependent gene expression and evolution of the Drosophila transcriptome. Science 300, 1742-1745.
-
(2003)
Science
, vol.300
, pp. 1742-1745
-
-
Ranz, J.M.1
Castillo-Davis, C.I.2
Meiklejohn, C.D.3
-
80
-
-
1542316920
-
Anomalies in the expression profile of interspecific hybrids of Drosophila melanogaster and Drosophila simulans
-
Ranz, J.M., Namgyal, K., Gibson, G., et al. (2004) Anomalies in the expression profile of interspecific hybrids of Drosophila melanogaster and Drosophila simulans. Genome Res 14, 373-379.
-
(2004)
Genome Res
, vol.14
, pp. 373-379
-
-
Ranz, J.M.1
Namgyal, K.2
Gibson, G.3
-
81
-
-
71149115250
-
Evolution of the tan locus contributed to pigment loss in Drosophila santomea: a response to Matute et al.
-
Rebeiz, M., Ramos-Womack, M., Jeong, S., et al. (2009) Evolution of the tan locus contributed to pigment loss in Drosophila santomea: a response to Matute et al. Cell 139, 1189-1196.
-
(2009)
Cell
, vol.139
, pp. 1189-1196
-
-
Rebeiz, M.1
Ramos-Womack, M.2
Jeong, S.3
-
82
-
-
0038450801
-
Little qualitative RNA misexpression in sterile male F1 hybrids of Drosophila pseudoobscura and D
-
Reiland, J., & Noor, M.A. (2002) Little qualitative RNA misexpression in sterile male F1 hybrids of Drosophila pseudoobscura and D. persimilis. BMC Evol Biol 2, 16.
-
(2002)
persimilis. BMC Evol Biol
, vol.2
, pp. 16
-
-
Reiland, J.1
Noor, M.A.2
-
83
-
-
34848892755
-
Species-specific positive selection of the male-specific lethal complex that participates in dosage compensation in Drosophila
-
Rodriguez, M.A., Vermaak, D., Bayes, J.J., et al. (2007) Species-specific positive selection of the male-specific lethal complex that participates in dosage compensation in Drosophila. Proc Natl Acad Sci USA 104, 15412-15417.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 15412-15417
-
-
Rodriguez, M.A.1
Vermaak, D.2
Bayes, J.J.3
-
84
-
-
80054737754
-
Interspecific Y chromosome introgressions disrupt testis-specific gene expression and male reproductive phenotypes in Drosophila
-
Sackton, T.B., Montenegro, H., Hartl, D.L., et al. (2012) Interspecific Y chromosome introgressions disrupt testis-specific gene expression and male reproductive phenotypes in Drosophila. Proc Natl Acad Sci USA 108, 17046-17051.
-
(2012)
Proc Natl Acad Sci USA
, vol.108
, pp. 17046-17051
-
-
Sackton, T.B.1
Montenegro, H.2
Hartl, D.L.3
-
85
-
-
0027154908
-
Cytogenetical localization of zygotic hybrid rescue (Zhr), a Drosophila melanogaster gene that rescues interspecific hybrids from embryonic lethality
-
Sawamura, K., & Yamamoto, M.T. (1993) Cytogenetical localization of zygotic hybrid rescue (Zhr), a Drosophila melanogaster gene that rescues interspecific hybrids from embryonic lethality. Mol Gen Genet 239, 441-449.
-
(1993)
Mol Gen Genet
, vol.239
, pp. 441-449
-
-
Sawamura, K.1
Yamamoto, M.T.2
-
87
-
-
33751081282
-
RNA editing in Drosophila melanogaster: new targets and functional consequences
-
Stapleton, M., Carlson, J.W., & Celniker, S.E. (2006) RNA editing in Drosophila melanogaster: new targets and functional consequences. RNA 12, 1922-1932.
-
(2006)
RNA
, vol.12
, pp. 1922-1932
-
-
Stapleton, M.1
Carlson, J.W.2
Celniker, S.E.3
-
88
-
-
0032480981
-
A role of Ultrabithorax in morphological differences between Drosophila species
-
Stern, D.L. (1998) A role of Ultrabithorax in morphological differences between Drosophila species. Nature 396, 463-466.
-
(1998)
Nature
, vol.396
, pp. 463-466
-
-
Stern, D.L.1
-
90
-
-
0034712834
-
Divergence of larval morphology between Drosophila sechellia and its sibling species caused by cis-regulatory evolution of ovo/shaven-baby
-
Sucena, E., & Stern, D.L. (2000) Divergence of larval morphology between Drosophila sechellia and its sibling species caused by cis-regulatory evolution of ovo/shaven-baby. Proc Natl Acad Sci USA 97, 4530-4534.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 4530-4534
-
-
Sucena, E.1
Stern, D.L.2
-
91
-
-
3042713996
-
The normal function of a speciation gene, Odysseus, and its hybrid sterility effect
-
Sun, S., Ting, C.T., & Wu, C.I. (2004) The normal function of a speciation gene, Odysseus, and its hybrid sterility effect. Science 305, 81-83.
-
(2004)
Science
, vol.305
, pp. 81-83
-
-
Sun, S.1
Ting, C.T.2
Wu, C.I.3
-
92
-
-
79951670841
-
Male sex interspecies divergence and down regulation of expression of spermatogenesis genes in Drosophila sterile hybrids
-
Sundararajan, V., & Civetta, A. (2011) Male sex interspecies divergence and down regulation of expression of spermatogenesis genes in Drosophila sterile hybrids. J Mol Evol 72, 80-89.
-
(2011)
J Mol Evol
, vol.72
, pp. 80-89
-
-
Sundararajan, V.1
Civetta, A.2
-
93
-
-
80053064781
-
Two types of cis-trans compensation in the evolution of transcriptional regulation
-
Takahasi, K.R., Matsuo, T., & Takano-Shimizu-Kouno, T. (2011) Two types of cis-trans compensation in the evolution of transcriptional regulation. Proc Natl Acad Sci USA 108, 15276-15281.
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, pp. 15276-15281
-
-
Takahasi, K.R.1
Matsuo, T.2
Takano-Shimizu-Kouno, T.3
-
94
-
-
84996413084
-
Further studies on the lethal hybrid (Lhr) gene of Drosophila simulans
-
Takamura, T., & Watanabe, T.K. (1980) Further studies on the lethal hybrid (Lhr) gene of Drosophila simulans. Jpn J Genet 55, 405-408.
-
(1980)
Jpn J Genet
, vol.55
, pp. 405-408
-
-
Takamura, T.1
Watanabe, T.K.2
-
95
-
-
59849091476
-
Evolution of the Drosophila nuclear pore complex results in multiple hybrid incompatibilities
-
Tang, S., & Presgraves, D.C. (2009) Evolution of the Drosophila nuclear pore complex results in multiple hybrid incompatibilities. Science 323, 779-782.
-
(2009)
Science
, vol.323
, pp. 779-782
-
-
Tang, S.1
Presgraves, D.C.2
-
96
-
-
0032553369
-
A rapidly evolving homeobox at the site of a hybrid sterility gene
-
Ting, C.T., Tsaur, S.C., Wu, M.L., et al. (1998) A rapidly evolving homeobox at the site of a hybrid sterility gene. Science 282, 1501-1504.
-
(1998)
Science
, vol.282
, pp. 1501-1504
-
-
Ting, C.T.1
Tsaur, S.C.2
Wu, M.L.3
-
97
-
-
0035051264
-
Developmental system drift and flexibility in evolutionary trajectories
-
True, J.R., & Haag, E.S. (2001) Developmental system drift and flexibility in evolutionary trajectories. Evol Dev 3, 109-119.
-
(2001)
Evol Dev
, vol.3
, pp. 109-119
-
-
True, J.R.1
Haag, E.S.2
-
98
-
-
43249099500
-
Twenty-five years of quantitative PCR for gene expression analysis
-
VanGuilder, H.D., Vrana, K.E., & Freeman, W.M. (2008) Twenty-five years of quantitative PCR for gene expression analysis. Biotechniques 44, 619-626.
-
(2008)
Biotechniques
, vol.44
, pp. 619-626
-
-
VanGuilder, H.D.1
Vrana, K.E.2
Freeman, W.M.3
-
99
-
-
36148942524
-
Transgenesis upgrades for Drosophila melanogaster
-
Venken, K.J., & Bellen, H.J. (2007) Transgenesis upgrades for Drosophila melanogaster. Development 134, 3571-3584.
-
(2007)
Development
, vol.134
, pp. 3571-3584
-
-
Venken, K.J.1
Bellen, H.J.2
-
100
-
-
67349098844
-
Versatile P[acman] BAC libraries for transgenesis studies in Drosophila melanogaster
-
Venken, K.J., Carlson, J.W., Schulze, K.L., et al. (2009) Versatile P[acman] BAC libraries for transgenesis studies in Drosophila melanogaster. Nat Methods 6, 431-434.
-
(2009)
Nat Methods
, vol.6
, pp. 431-434
-
-
Venken, K.J.1
Carlson, J.W.2
Schulze, K.L.3
-
101
-
-
0003604438
-
Über Entwickelungsgeschichte der Thiere: Beobachtung und Reflexion
-
Borntrager, Königsberg
-
Von Baer, K.E. (1828) Über Entwickelungsgeschichte der Thiere: Beobachtung und Reflexion. Borntrager, Königsberg.
-
(1828)
-
-
Von Baer, K.E.1
-
102
-
-
57749195712
-
RNA-seq: a revolutionary tool for transcriptomics
-
Wang, Z., Gerstein, M., & Snyder, M. (2009) RNA-seq: a revolutionary tool for transcriptomics. Nat Rev Genet 10, 57-63.
-
(2009)
Nat Rev Genet
, vol.10
, pp. 57-63
-
-
Wang, Z.1
Gerstein, M.2
Snyder, M.3
-
103
-
-
84857206944
-
Using pyrosequencing to measure allele-specific mRNA abundance and infer the effects of cis-and transregulatory differences
-
Wittkopp, P.J. (2011) Using pyrosequencing to measure allele-specific mRNA abundance and infer the effects of cis-and transregulatory differences. Methods Mol Biol 772, 297-317.
-
(2011)
Methods Mol Biol
, vol.772
, pp. 297-317
-
-
Wittkopp, P.J.1
-
104
-
-
3042722019
-
Evolutionary changes in cis and trans gene regulation
-
Wittkopp, P.J., Haerum, B.K., & Clark, A.G. (2004) Evolutionary changes in cis and trans gene regulation. Nature 430, 85-88.
-
(2004)
Nature
, vol.430
, pp. 85-88
-
-
Wittkopp, P.J.1
Haerum, B.K.2
Clark, A.G.3
-
105
-
-
39749116219
-
Regulatory changes underlying expression differences within and between Drosophila species
-
Wittkopp, P.J., Haerum, B.K., & Clark, A.G. (2008) Regulatory changes underlying expression differences within and between Drosophila species. Nat Genet 40, 346-350.
-
(2008)
Nat Genet
, vol.40
, pp. 346-350
-
-
Wittkopp, P.J.1
Haerum, B.K.2
Clark, A.G.3
-
106
-
-
33847057226
-
The evolutionary significance of cis-regulatory mutations
-
Wray, G.A. (2007) The evolutionary significance of cis-regulatory mutations. Nat Rev Genet 8, 206-216.
-
(2007)
Nat Rev Genet
, vol.8
, pp. 206-216
-
-
Wray, G.A.1
-
107
-
-
0042697343
-
The evolution of transcriptional regulation in eukaryotes
-
Wray, G.A., Hahn, M.W., Abouheif, E., et al. (2003) The evolution of transcriptional regulation in eukaryotes.Mol Biol Evol 20, 1377-1419.
-
(2003)
Mol Biol Evol
, vol.20
, pp. 1377-1419
-
-
Wray, G.A.1
Hahn, M.W.2
Abouheif, E.3
-
108
-
-
0001688073
-
Evolution of post-mating reproductive isolation -the composite nature of Haldane's rule and its genetic bases
-
Wu, C.-I., & Davis, A.W. (1993) Evolution of post-mating reproductive isolation -the composite nature of Haldane's rule and its genetic bases. Am Nat 187-212.
-
(1993)
Am Nat
, pp. 187-212
-
-
Wu, C.-I.1
Davis, A.W.2
-
109
-
-
30244467422
-
Haldane's rule and its legacy: Why are there so many sterile males?
-
Wu, C.I., Johnson, N.A., & Palopoli, M.F. (1996) Haldane's rule and its legacy: Why are there so many sterile males? Trends Ecol Evol 11, 281-284.
-
(1996)
Trends Ecol Evol
, vol.11
, pp. 281-284
-
-
Wu, C.I.1
Johnson, N.A.2
Palopoli, M.F.3
-
110
-
-
79955142870
-
Population transcriptomics: insights from Drosophila simulans, Drosophila sechellia and their hybrids
-
Wurmser, F., Ogereau, D., Mary-Huard, T., et al. (2011) Population transcriptomics: insights from Drosophila simulans, Drosophila sechellia and their hybrids. Genetica 139, 465-477.
-
(2011)
Genetica
, vol.139
, pp. 465-477
-
-
Wurmser, F.1
Ogereau, D.2
Mary-Huard, T.3
-
111
-
-
34848905626
-
Evidence for transgenerational transmission of epigenetic tumor susceptibility in Drosophila
-
Xing, Y., Shi, S., Le, L., et al. (2007) Evidence for transgenerational transmission of epigenetic tumor susceptibility in Drosophila. PLoS Genet 3, 1598-1606.
-
(2007)
PLoS Genet
, vol.3
, pp. 1598-1606
-
-
Xing, Y.1
Shi, S.2
Le, L.3
-
112
-
-
0027160823
-
A combined classical genetic and high resolution two-dimensional electrophoretic approach to the assessment of the number of genes affecting hybrid male sterility in Drosophila simulans and Drosophila sechellia
-
Zeng, L.W., & Singh, R.S. (1993) A combined classical genetic and high resolution two-dimensional electrophoretic approach to the assessment of the number of genes affecting hybrid male sterility in Drosophila simulans and Drosophila sechellia. Genetics 135, 135-147.
-
(1993)
Genetics
, vol.135
, pp. 135-147
-
-
Zeng, L.W.1
Singh, R.S.2
|