메뉴 건너뛰기




Volumn 14, Issue 10, 2013, Pages

The genetic heterogeneity and mutational burden of engineered melanomas in zebrafish models

(40)  Yen, Jennifer a   White, Richard M b   Wedge, David C a   Van Loo, Peter a,c   de Ridder, Jeroen d   Capper, Amy e   Richardson, Jennifer e   Jones, David a   Raine, Keiran a   Watson, Ian R f   Wu, Chang Jiun f   Cheng, Jiqiu g   Martincorena, Iñigo a   Nik Zainal, Serena a   Mudie, Laura a   Moreau, Yves g   Marshall, John a   Ramakrishna, Manasa a   Tarpey, Patrick a   Shlien, Adam a   more..


Author keywords

[No Author keywords available]

Indexed keywords

CYCLIC AMP DEPENDENT PROTEIN KINASE; GLUTAMIC ACID; GLUTAMINE; LYSINE; MITOGEN ACTIVATED PROTEIN KINASE; VALINE;

EID: 84886228663     PISSN: None     EISSN: 1474760X     Source Type: Journal    
DOI: 10.1186/gb-2013-14-10-r113     Document Type: Article
Times cited : (38)

References (66)
  • 1
    • 84860214530 scopus 로고    scopus 로고
    • From genes to drugs: targeted strategies for melanoma
    • Flaherty KT, Hodi FS, Fisher DE. From genes to drugs: targeted strategies for melanoma. Nat Publ Group 2012, 12:349-361.
    • (2012) Nat Publ Group , vol.12 , pp. 349-361
    • Flaherty, K.T.1    Hodi, F.S.2    Fisher, D.E.3
  • 6
    • 74049101047 scopus 로고    scopus 로고
    • Oncogenic NRAS cooperates with p53 loss to generate melanoma in zebrafish
    • 10.1089/zeb.2009.0606, 2943216,2943216, 19954345
    • Dovey M, White RM, Zon LI. Oncogenic NRAS cooperates with p53 loss to generate melanoma in zebrafish. Zebrafish 2009, 6:397-404. 10.1089/zeb.2009.0606, 2943216,2943216, 19954345.
    • (2009) Zebrafish , vol.6 , pp. 397-404
    • Dovey, M.1    White, R.M.2    Zon, L.I.3
  • 7
    • 84874189784 scopus 로고    scopus 로고
    • Highly recurrent TERT promoter mutations in human melanoma
    • 10.1126/science.1229259, 23348506
    • Huang FW, Hodis E, Xu MJ, Kryukov GV, Chin L, Garraway LA. Highly recurrent TERT promoter mutations in human melanoma. Science 2013, 339:957-959. 10.1126/science.1229259, 23348506.
    • (2013) Science , vol.339 , pp. 957-959
    • Huang, F.W.1    Hodis, E.2    Xu, M.J.3    Kryukov, G.V.4    Chin, L.5    Garraway, L.A.6
  • 12
    • 19944426854 scopus 로고    scopus 로고
    • Tp53 mutant zebrafish develop malignant peripheral nerve sheath tumors
    • 10.1073/pnas.0406252102, 544293, 15630097
    • Berghmans S, Look TA. tp53 mutant zebrafish develop malignant peripheral nerve sheath tumors. Proc Natl Acad Sci U S A 2005, 102:407-412. 10.1073/pnas.0406252102, 544293, 15630097.
    • (2005) Proc Natl Acad Sci U S A , vol.102 , pp. 407-412
    • Berghmans, S.1    Look, T.A.2
  • 13
    • 0033037541 scopus 로고    scopus 로고
    • The INK4A/ARF locus and its two gene products
    • 10.1016/S0959-437X(99)80004-5, 10072356
    • Sharpless NE, DePinho RA. The INK4A/ARF locus and its two gene products. Curr Opin Genet Dev 1999, 9:22-30. 10.1016/S0959-437X(99)80004-5, 10072356.
    • (1999) Curr Opin Genet Dev , vol.9 , pp. 22-30
    • Sharpless, N.E.1    DePinho, R.A.2
  • 14
    • 79151477713 scopus 로고    scopus 로고
    • Mitfa is required at multiple stages of melanocyte differentiation but not to establish the melanocyte stem cell
    • 10.1016/j.ydbio.2010.12.004, 3040983, 21146516
    • Johnson SL, Nguyen AN, Lister JA. mitfa is required at multiple stages of melanocyte differentiation but not to establish the melanocyte stem cell. Dev Biol 2011, 350:405-413. 10.1016/j.ydbio.2010.12.004, 3040983, 21146516.
    • (2011) Dev Biol , vol.350 , pp. 405-413
    • Johnson, S.L.1    Nguyen, A.N.2    Lister, J.A.3
  • 16
    • 0032824044 scopus 로고    scopus 로고
    • Nacre encodes a zebrafish microphthalmia-related protein that regulates neural-crest-derived pigment cell fate
    • Lister JA, Robertson CP, Lepage T, Johnson SL, Raible DW. Nacre encodes a zebrafish microphthalmia-related protein that regulates neural-crest-derived pigment cell fate. Development 1999, 126:3757-3767.
    • (1999) Development , vol.126 , pp. 3757-3767
    • Lister, J.A.1    Robertson, C.P.2    Lepage, T.3    Johnson, S.L.4    Raible, D.W.5
  • 17
    • 39149134579 scopus 로고    scopus 로고
    • Zebrafish pten genes have overlapping and non-redundant functions in tumorigenesis and embryonic development
    • Faucherre A, Taylor GS, Overvoorde J, Dixon JE, Hertog JD. Zebrafish pten genes have overlapping and non-redundant functions in tumorigenesis and embryonic development. Oncogene 2007, 27:1079-1086.
    • (2007) Oncogene , vol.27 , pp. 1079-1086
    • Faucherre, A.1    Taylor, G.S.2    Overvoorde, J.3    Dixon, J.E.4    Hertog, J.D.5
  • 22
    • 84857838310 scopus 로고    scopus 로고
    • Efficient de novo assembly of large genomes using compressed data structures
    • 10.1101/gr.126953.111, 3290790, 22156294
    • Simpson JT, Durbin R. Efficient de novo assembly of large genomes using compressed data structures. Genome Res 2012, 22:549-556. 10.1101/gr.126953.111, 3290790, 22156294.
    • (2012) Genome Res , vol.22 , pp. 549-556
    • Simpson, J.T.1    Durbin, R.2
  • 23
    • 70350694443 scopus 로고    scopus 로고
    • Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads
    • 10.1093/bioinformatics/btp394, 2781750, 19561018
    • Ye K, Schulz MH, Long Q, Apweiler R, Ning Z. Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads. Bioinformatics 2009, 25:2865-2871. 10.1093/bioinformatics/btp394, 2781750, 19561018.
    • (2009) Bioinformatics , vol.25 , pp. 2865-2871
    • Ye, K.1    Schulz, M.H.2    Long, Q.3    Apweiler, R.4    Ning, Z.5
  • 32
    • 84860914465 scopus 로고    scopus 로고
    • Differences in the enzymatic efficiency of human and bony fish AID are mediated by a single residue in the C terminus modulating single-stranded DNA binding
    • 10.1096/fj.11-198135, 22198384
    • Dancyger AM, King JJ, Quinlan MJ, Fifield H, Tucker S, Saunders HL, Berru M, Magor BG, Martin A, Larijani M. Differences in the enzymatic efficiency of human and bony fish AID are mediated by a single residue in the C terminus modulating single-stranded DNA binding. FASEB J 2012, 26:1517-1525. 10.1096/fj.11-198135, 22198384.
    • (2012) FASEB J , vol.26 , pp. 1517-1525
    • Dancyger, A.M.1    King, J.J.2    Quinlan, M.J.3    Fifield, H.4    Tucker, S.5    Saunders, H.L.6    Berru, M.7    Magor, B.G.8    Martin, A.9    Larijani, M.10
  • 34
    • 84859471223 scopus 로고    scopus 로고
    • The role of the PI3K-AKT pathway in melanoma
    • 10.1097/PPO.0b013e31824d448c, 22453015
    • Davies MA. The role of the PI3K-AKT pathway in melanoma. Cancer J 2012, 18:142-147. 10.1097/PPO.0b013e31824d448c, 22453015.
    • (2012) Cancer J , vol.18 , pp. 142-147
    • Davies, M.A.1
  • 37
    • 0034904569 scopus 로고    scopus 로고
    • Novel immune-type receptor genes
    • 10.1034/j.1600-065X.2001.1810121.x, 11513146
    • Litman GW, Hawke NA, Yoder JA. Novel immune-type receptor genes. Immunol Rev 2001, 181:250-259. 10.1034/j.1600-065X.2001.1810121.x, 11513146.
    • (2001) Immunol Rev , vol.181 , pp. 250-259
    • Litman, G.W.1    Hawke, N.A.2    Yoder, J.A.3
  • 38
    • 0035811055 scopus 로고    scopus 로고
    • Immune-type receptor genes in zebrafish share genetic and functional properties with genes encoded by the mammalian leukocyte receptor cluster
    • 10.1073/pnas.121101598, 34428, 11381126
    • Yoder JA, Mueller MG, Wei S, Corliss BC, Prather DM, Willis T, Litman RT, Djeu JY, Litman GW. Immune-type receptor genes in zebrafish share genetic and functional properties with genes encoded by the mammalian leukocyte receptor cluster. Proc Natl Acad Sci U S A 2001, 98:6771-6776. 10.1073/pnas.121101598, 34428, 11381126.
    • (2001) Proc Natl Acad Sci U S A , vol.98 , pp. 6771-6776
    • Yoder, J.A.1    Mueller, M.G.2    Wei, S.3    Corliss, B.C.4    Prather, D.M.5    Willis, T.6    Litman, R.T.7    Djeu, J.Y.8    Litman, G.W.9
  • 39
    • 33745684404 scopus 로고    scopus 로고
    • Melanoma
    • 10.1056/NEJMra052166, 16822996
    • Miller AJ, Mihm MCJ. Melanoma. N Engl J Med 2006, 355:51-65. 10.1056/NEJMra052166, 16822996.
    • (2006) N Engl J Med , vol.355 , pp. 51-65
    • Miller, A.J.1    Mihm, M.C.J.2
  • 43
    • 0030587442 scopus 로고    scopus 로고
    • The gene encoding the catalytic subunit Cα of cAMP-dependent protein kinase (locus PRKACA) localizes to human chromosome region 19p13.1
    • 10.1006/geno.1996.0501, 8884279
    • Taskén K, Solberg R, Zhao Y, Hansson V, Jahnsen T, Siciliano MJ. The gene encoding the catalytic subunit Cα of cAMP-dependent protein kinase (locus PRKACA) localizes to human chromosome region 19p13.1. Genomics 1996, 36:535-538. 10.1006/geno.1996.0501, 8884279.
    • (1996) Genomics , vol.36 , pp. 535-538
    • Taskén, K.1    Solberg, R.2    Zhao, Y.3    Hansson, V.4    Jahnsen, T.5    Siciliano, M.J.6
  • 44
    • 78650811543 scopus 로고    scopus 로고
    • Central role for cAMP signaling in pigmentation and UV resistance
    • 10.4161/cc.10.1.14292, 21200135
    • D'Orazio J, Fisher DE. Central role for cAMP signaling in pigmentation and UV resistance. Cell Cycle 2011, 10:8-9. 10.4161/cc.10.1.14292, 21200135.
    • (2011) Cell Cycle , vol.10 , pp. 8-9
    • D'Orazio, J.1    Fisher, D.E.2
  • 45
    • 34547821490 scopus 로고    scopus 로고
    • Molecular genetics of the cAMP-dependent protein kinase pathway and of sporadic pituitary tumorigenesis
    • 10.1093/hmg/ddm019, 17613552
    • Boikos SA, Stratakis CA. Molecular genetics of the cAMP-dependent protein kinase pathway and of sporadic pituitary tumorigenesis. Hum Mol Genet 2007, 16:R80-R87. 10.1093/hmg/ddm019, 17613552.
    • (2007) Hum Mol Genet , vol.16
    • Boikos, S.A.1    Stratakis, C.A.2
  • 46
    • 77955324701 scopus 로고    scopus 로고
    • PRKAR1A and the evolution of pituitary tumors
    • 10.1016/j.mce.2010.04.027, 2922961, 20451576
    • Kirschner LS. PRKAR1A and the evolution of pituitary tumors. Mol Cell Endocrinol 2010, 326:3-7. 10.1016/j.mce.2010.04.027, 2922961, 20451576.
    • (2010) Mol Cell Endocrinol , vol.326 , pp. 3-7
    • Kirschner, L.S.1
  • 47
    • 0033812849 scopus 로고    scopus 로고
    • Mutations of the gene encoding the protein kinase A type I-alpha regulatory subunit in patients with the Carney complex
    • 10.1038/79238, 10973256
    • Kirschner LS, Carney JA, Pack SD, Taymans SE, Giatzakis C, Cho YS, Cho-Chung YS, Stratakis CA. Mutations of the gene encoding the protein kinase A type I-alpha regulatory subunit in patients with the Carney complex. Nat Genet 2000, 26:89-92. 10.1038/79238, 10973256.
    • (2000) Nat Genet , vol.26 , pp. 89-92
    • Kirschner, L.S.1    Carney, J.A.2    Pack, S.D.3    Taymans, S.E.4    Giatzakis, C.5    Cho, Y.S.6    Cho-Chung, Y.S.7    Stratakis, C.A.8
  • 48
    • 58149212170 scopus 로고
    • Carney complex: the complex of myxomas, spotty pigmentation, endocrine overactivity, and schwannomas
    • 10.1016/S1085-5629(05)80003-3, 7640202
    • Carney JA. Carney complex: the complex of myxomas, spotty pigmentation, endocrine overactivity, and schwannomas. Semin Dermatol 1995, 14:90-98. 10.1016/S1085-5629(05)80003-3, 7640202.
    • (1995) Semin Dermatol , vol.14 , pp. 90-98
    • Carney, J.A.1
  • 49
    • 0034127724 scopus 로고    scopus 로고
    • Cyclic AMP a key messenger in the regulation of skin pigmentation
    • 10.1034/j.1600-0749.2000.130203.x, 10841026
    • Busca R, Ballotti R. Cyclic AMP a key messenger in the regulation of skin pigmentation. Pigment Cell Res 2000, 13:60-69. 10.1034/j.1600-0749.2000.130203.x, 10841026.
    • (2000) Pigment Cell Res , vol.13 , pp. 60-69
    • Busca, R.1    Ballotti, R.2
  • 51
    • 84887989926 scopus 로고    scopus 로고
    • Wgsim - Read simulator for next generation sequencing
    • Heng L. wgsim - Read simulator for next generation sequencing. [https://github.com/lh3/wgsim].
    • Heng, L.1
  • 54
    • 77949587649 scopus 로고    scopus 로고
    • Fast and accurate long-read alignment with Burrows-Wheeler transform
    • 10.1093/bioinformatics/btp698, 2828108, 20080505
    • Li H, Durbin R. Fast and accurate long-read alignment with Burrows-Wheeler transform. Bioinformatics 2010, 26:589-595. 10.1093/bioinformatics/btp698, 2828108, 20080505.
    • (2010) Bioinformatics , vol.26 , pp. 589-595
    • Li, H.1    Durbin, R.2
  • 55
    • 84888002592 scopus 로고    scopus 로고
    • SomaticSniper scripts
    • SomaticSniper scripts. [https://github.com/genome/somatic-sniper/blob/master/src/scripts/].
  • 56
    • 84887994004 scopus 로고    scopus 로고
    • Nexus Copy Number - BioDiscovery - Copy Number Variation
    • Nexus Copy Number - BioDiscovery - Copy Number Variation. http://www.biodiscovery.com/software/nexus-copy-number/.
  • 57
    • 84875634162 scopus 로고    scopus 로고
    • Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration
    • 10.1093/bib/bbs017, 3603213, 22517427
    • Thorvaldsdottir H, Robinson JT, Mesirov JP. Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration. Brief Bioinformatics 2013, 14:178-192. 10.1093/bib/bbs017, 3603213, 22517427.
    • (2013) Brief Bioinformatics , vol.14 , pp. 178-192
    • Thorvaldsdottir, H.1    Robinson, J.T.2    Mesirov, J.P.3
  • 59
    • 0036139520 scopus 로고    scopus 로고
    • Progenetix.net: an online repository for molecular cytogenetic aberration data
    • 10.1093/bioinformatics/17.12.1228, 11751233
    • Baudis M, Cleary ML. Progenetix.net: an online repository for molecular cytogenetic aberration data. Bioinformatics 2001, 17:1228-1229. 10.1093/bioinformatics/17.12.1228, 11751233.
    • (2001) Bioinformatics , vol.17 , pp. 1228-1229
    • Baudis, M.1    Cleary, M.L.2
  • 60
    • 84888010384 scopus 로고    scopus 로고
    • Roche DNA Microarray Support
    • Roche DNA Microarray Support. [http://www.nimblegen.com/products/software/deva/index.html].
  • 61
    • 84888013590 scopus 로고    scopus 로고
    • DEVA Software User's Guide v1.2
    • NimbleGen R. DEVA Software User's Guide v1.2. NimbleGen 2012, 1:1-200.
    • (2012) NimbleGen , vol.1 , pp. 1-200
    • NimbleGen, R.1
  • 63
    • 33747869580 scopus 로고    scopus 로고
    • Statistical analysis of pathogenicity of somatic mutations in cancer
    • 10.1534/genetics.105.044677, 1569711, 16783027
    • Greenman C, Wooster R, Futreal PA, Stratton MR, Easton DF. Statistical analysis of pathogenicity of somatic mutations in cancer. Genetics 2006, 173:2187-2198. 10.1534/genetics.105.044677, 1569711, 16783027.
    • (2006) Genetics , vol.173 , pp. 2187-2198
    • Greenman, C.1    Wooster, R.2    Futreal, P.A.3    Stratton, M.R.4    Easton, D.F.5
  • 64
    • 15844406550 scopus 로고    scopus 로고
    • HyPhy: hypothesis testing using phylogenies
    • 10.1093/bioinformatics/bti079, 15509596
    • Pond SLK, Frost SDW, Muse SV. HyPhy: hypothesis testing using phylogenies. Bioinformatics 2005, 21:676-679. 10.1093/bioinformatics/bti079, 15509596.
    • (2005) Bioinformatics , vol.21 , pp. 676-679
    • Pond, S.L.K.1    Frost, S.D.W.2    Muse, S.V.3
  • 65
    • 84888006574 scopus 로고    scopus 로고
    • Index of gene
    • Index of gene. [http://ftp.ncbi.nih.gov/gene/].
  • 66
    • 77956548953 scopus 로고    scopus 로고
    • Cytoscape Web: an interactive web-based network browser
    • 10.1093/bioinformatics/btq430, 2935447, 20656902
    • Lopes CT, Franz M, Kazi F, Donaldson SL, Morris Q, Bader GD. Cytoscape Web: an interactive web-based network browser. Bioinformatics 2010, 26:2347-2348. 10.1093/bioinformatics/btq430, 2935447, 20656902.
    • (2010) Bioinformatics , vol.26 , pp. 2347-2348
    • Lopes, C.T.1    Franz, M.2    Kazi, F.3    Donaldson, S.L.4    Morris, Q.5    Bader, G.D.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.