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Volumn 6, Issue 5, 2013, Pages 546-553

Common fusion transcripts identified in colorectal cancer cell lines by high-throughput RNA sequencing

Author keywords

[No Author keywords available]

Indexed keywords

B RAF KINASE; PHOSPHATIDYLINOSITOL 3, 4, 5 TRISPHOSPHATE 3 PHOSPHATASE; UNCLASSIFIED DRUG;

EID: 84885716933     PISSN: None     EISSN: 19365233     Source Type: Journal    
DOI: 10.1593/tlo.13457     Document Type: Article
Times cited : (29)

References (45)
  • 2
    • 82955189738 scopus 로고    scopus 로고
    • Molecular profiling of colon tumors: The search for clinically relevant biomarkers of progression, prognosis, therapeutics, and predisposition
    • Bacolod MD and Barany F (2011). Molecular profiling of colon tumors: the search for clinically relevant biomarkers of progression, prognosis, therapeutics, and predisposition. Ann Surg Oncol 18, 3694-3700.
    • (2011) Ann Surg Oncol , vol.18 , pp. 3694-3700
    • Bacolod, M.D.1    Barany, F.2
  • 3
    • 77951497951 scopus 로고    scopus 로고
    • The molecular therapy of colorectal cancer
    • Waldner MJ and NeurathMF(2010). The molecular therapy of colorectal cancer. Mol Aspects Med 31, 171-178.
    • (2010) Mol Aspects Med , vol.31 , pp. 171-178
    • Waldner, M.J.1    Neurath, M.F.2
  • 4
    • 34447106755 scopus 로고    scopus 로고
    • Alternative splicing in cancer: Noise, functional, or systematic?
    • Skotheim RI and NeesM(2007). Alternative splicing in cancer: noise, functional, or systematic? Int J Biochem Cell Biol 39, 1432-1449.
    • (2007) Int J Biochem Cell Biol , vol.39 , pp. 1432-1449
    • Skotheim, R.I.1    Nees, M.2
  • 19
    • 84866313567 scopus 로고    scopus 로고
    • Chimeric transcript generated by cis-splicing of adjacent genes regulates prostate cancer cell proliferation
    • Zhang Y, Gong M, Yuan H, Park HG, Frierson HF, and Li H (2012). Chimeric transcript generated by cis-splicing of adjacent genes regulates prostate cancer cell proliferation. Cancer Discov 2, 598-607.
    • (2012) Cancer Discov , vol.2 , pp. 598-607
    • Zhang, Y.1    Gong, M.2    Yuan, H.3    Park, H.G.4    Frierson, H.F.5    Li, H.6
  • 24
    • 51149114001 scopus 로고    scopus 로고
    • A neoplastic gene fusion mimics trans-splicing of RNAs in normal human cells
    • Li H, Wang J, Mor G, and Sklar J (2008). A neoplastic gene fusion mimics trans-splicing of RNAs in normal human cells. Science 321, 1357-1361.
    • (2008) Science , vol.321 , pp. 1357-1361
    • Li, H.1    Wang, J.2    Mor, G.3    Sklar, J.4
  • 26
    • 0037364659 scopus 로고    scopus 로고
    • Genetic tumor markers with prognostic impact in Dukes' stages B and C colorectal cancer patients
    • Diep CB, Thorstensen L, Meling GI, Skovlund E, Rognum TO, and Lothe RA (2003). Genetic tumor markers with prognostic impact in Dukes' stages B and C colorectal cancer patients. J Clin Oncol 21, 820-829.
    • (2003) J Clin Oncol , vol.21 , pp. 820-829
    • Diep, C.B.1    Thorstensen, L.2    Meling, G.I.3    Skovlund, E.4    Rognum, T.O.5    Lothe, R.A.6
  • 28
    • 79957532542 scopus 로고    scopus 로고
    • Transcriptome instability in colorectal cancer identified by exon microarray analyses: Associations with splicing factor expression levels and patient survival
    • Sveen A, Agesen TH, Nesbakken A, Rognum TO, Lothe RA, and Skotheim RI (2011). Transcriptome instability in colorectal cancer identified by exon microarray analyses: associations with splicing factor expression levels and patient survival. Genome Med 3, 32.
    • (2011) Genome Med , vol.3 , pp. 32
    • Sveen, A.1    Agesen, T.H.2    Nesbakken, A.3    Rognum, T.O.4    Lothe, R.A.5    Skotheim, R.I.6
  • 31
    • 65449136284 scopus 로고    scopus 로고
    • TopHat: Discovering splice junctions with RNA-Seq
    • Trapnell C, Pachter L, and Salzberg SL (2009). TopHat: discovering splice junctions with RNA-Seq. Bioinformatics 25, 1105-1111.
    • (2009) Bioinformatics , vol.25 , pp. 1105-1111
    • Trapnell, C.1    Pachter, L.2    Salzberg, S.L.3
  • 32
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memoryefficient alignment of short DNA sequences to the human genome
    • Langmead B, Trapnell C, Pop M, and Salzberg SL (2009). Ultrafast and memoryefficient alignment of short DNA sequences to the human genome. Genome Biol 10, R25.
    • (2009) Genome Biol , vol.10
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 33
    • 70149113077 scopus 로고    scopus 로고
    • R Development Core Team, R Foundation for Statistical Computing, Vienna, Austria
    • R Development Core Team (2009). R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna, Austria.
    • (2009) R: A Language and Environment for Statistical Computing
  • 36
    • 0033990048 scopus 로고    scopus 로고
    • Primer3 on the WWW for general users and for biologist programmers
    • Rozen S and Skaletsky H (2000). Primer3 on the WWW for general users and for biologist programmers. Methods Mol Biol 132, 365-386.
    • (2000) Methods Mol Biol , vol.132 , pp. 365-386
    • Rozen, S.1    Skaletsky, H.2
  • 37
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li H and Durbin R (2009). Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25, 1754-1760.
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 39
    • 84868332770 scopus 로고    scopus 로고
    • nFuse: Discovery of complex genomic rearrangements in cancer using highthroughput sequencing
    • McPherson A, Wu C, Wyatt AW, Shah S, Collins C, and Sahinalp SC (2012). nFuse: discovery of complex genomic rearrangements in cancer using highthroughput sequencing. Genome Res 22, 2250-2261.
    • (2012) Genome Res , vol.22 , pp. 2250-2261
    • McPherson, A.1    Wu, C.2    Wyatt, A.W.3    Shah, S.4    Collins, C.5    Sahinalp, S.C.6
  • 41
    • 0035666660 scopus 로고    scopus 로고
    • Human phosphodiesterase 8A splice variants: Cloning, gene organization, and tissue distribution
    • Wang P, Wu P, Egan RW, and Billah MM (2001). Human phosphodiesterase 8A splice variants: cloning, gene organization, and tissue distribution. Gene 280, 183-194.
    • (2001) Gene , vol.280 , pp. 183-194
    • Wang, P.1    Wu, P.2    Egan, R.W.3    Billah, M.M.4
  • 42
    • 0035941212 scopus 로고    scopus 로고
    • AKAP-Lbc anchors protein kinase A and nucleates Gα12-selective Rho-mediated stress fiber formation
    • Diviani D, Soderling J, and Scott JD (2001). AKAP-Lbc anchors protein kinase A and nucleates Gα12-selective Rho-mediated stress fiber formation. J Biol Chem 276, 44247-44257.
    • (2001) J Biol Chem , vol.276 , pp. 44247-44257
    • Diviani, D.1    Soderling, J.2    Scott, J.D.3
  • 44
    • 0030926547 scopus 로고    scopus 로고
    • Characterization of the adaptor-related protein complex, AP-3
    • Simpson F, Peden AA, Christopoulou L, and Robinson MS (1997). Characterization of the adaptor-related protein complex, AP-3. J Cell Biol 137, 835-845.
    • (1997) J Cell Biol , vol.137 , pp. 835-845
    • Simpson, F.1    Peden, A.A.2    Christopoulou, L.3    Robinson, M.S.4
  • 45
    • 34047260728 scopus 로고    scopus 로고
    • Characterization of the interactome of the human MutL homologues MLH1, PMS1, and PMS2
    • Cannavo E, Gerrits B, Marra G, Schlapbach R, and Jiricny J (2007). Characterization of the interactome of the human MutL homologues MLH1, PMS1, and PMS2. J Biol Chem 282, 2976-2986.
    • (2007) J Biol Chem , vol.282 , pp. 2976-2986
    • Cannavo, E.1    Gerrits, B.2    Marra, G.3    Schlapbach, R.4    Jiricny, J.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.