SCOPUS 정보 검색 플랫폼

Journal of Physical Chemistry B

Volumn 117, Issue 40, 2013, Pages 12030-12038

Revealing hidden helix propensity in Aβ peptides by molecular dynamics simulations

(2) Lockhart, Christopher a Klimov, Dmitri K a

a GEORGE MASON UNIVERSITY (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CONFORMATIONAL ENSEMBLE; CONFORMATIONAL SWITCHES; EQUILIBRIUM DISTRIBUTIONS; EXPLICIT SOLVENTS; HELICAL STRUCTURES; HELIX CONFORMATION; MOLECULAR DYNAMICS SIMULATIONS; REPLICA-EXCHANGE MOLECULAR DYNAMICS SIMULATIONS;

MOLECULAR DYNAMICS;

PEPTIDES;

AMYLOID BETA PROTEIN; LYSINE; SOLVENT;

ARTICLE; CHEMISTRY; METABOLISM; MOLECULAR DYNAMICS; PROTEIN SECONDARY STRUCTURE;

AMYLOID BETA-PEPTIDES; LYSINE; MOLECULAR DYNAMICS SIMULATION; PROTEIN STRUCTURE, SECONDARY; SOLVENTS;

EID: 84885616825 PISSN: 15206106 EISSN: 15205207 Source Type: Journal
DOI: 10.1021/jp407705j Document Type: Article

Times cited : (7)

References (37)

1
- 0037135111
- Hardy, J.; Selkoe, D. J. Science 2002, 297, 353-356
- (2002) Science , vol.297 , pp. 353-356
- Hardy, J.¹ Selkoe, D.J.²

2
- 0026646604
- Haass, C.; Schlossmacher, M. G.; Hung, A. Y.; Vigo-Pelfrey, C.; Mellon, A.; Ostaszewski, B. L.; Lieberburg, I.; Koo, E. H.; Schenk, D.; Teplow, D. B. Nature 1992, 359, 322-325
- (1992) Nature , vol.359 , pp. 322-325
- Haass, C.¹ Schlossmacher, M.G.² Hung, A.Y.³ Vigo-Pelfrey, C.⁴ Mellon, A.⁵ Ostaszewski, B.L.⁶ Lieberburg, I.⁷ Koo, E.H.⁸ Schenk, D.⁹ Teplow, D.B.¹⁰

3
- 0347357617
- Dobson, C. M. Nature 2003, 426, 884-890
- (2003) Nature , vol.426 , pp. 884-890
- Dobson, C.M.¹

4
- 0034718157
- Serpell, L. C. Biochim. Biophys. Acta 2000, 1502, 16-30
- (2000) Biochim. Biophys. Acta , vol.1502 , pp. 16-30
- Serpell, L.C.¹

5
- 33847662852
- Haass, C.; Selkoe, D. J. Nat. Rev. Mol. Cell. Biol. 2007, 8, 101-112
- (2007) Nat. Rev. Mol. Cell. Biol. , vol.8 , pp. 101-112
- Haass, C.¹ Selkoe, D.J.²

6
- 49149124343
- Shankar, G. M.; Li, S.; Mehta, T. H.; Garcia-Munoz, A.; Shepardson, N. E.; Smith, I.; Brett, F. M.; Farrell, M. A.; Rowan, M. J.; Lemere, C. A. Nat. Med. 2008, 14, 837-842
- (2008) Nat. Med. , vol.14 , pp. 837-842
- Shankar, G.M.¹ Li, S.² Mehta, T.H.³ Garcia-Munoz, A.⁴ Shepardson, N.E.⁵ Smith, I.⁶ Brett, F.M.⁷ Farrell, M.A.⁸ Rowan, M.J.⁹ Lemere, C.A.¹⁰

7
- 80053589341
- Williams, T. L.; Serpell, L. C. FEBS J. 2011, 278, 3905-3917
- (2011) FEBS J. , vol.278 , pp. 3905-3917
- Williams, T.L.¹ Serpell, L.C.²

8
- 34547214510
- Arispe, N.; Diaz, J. C.; Simakova, O. Biochim. Biophys. Acta 2007, 1768, 1952-1965
- (2007) Biochim. Biophys. Acta , vol.1768 , pp. 1952-1965
- Arispe, N.¹ Diaz, J.C.² Simakova, O.³

9
- 0027944284
- Durell, S. R.; Guy, H. R.; Arispe, N.; Rojas, E.; Pollard, H. B. Biophys. J. 1994, 67, 2137-2145
- (1994) Biophys. J. , vol.67 , pp. 2137-2145
- Durell, S.R.¹ Guy, H.R.² Arispe, N.³ Rojas, E.⁴ Pollard, H.B.⁵

10
- 77950890953
- Jang, H.; Arce, F. T.; Ramachandran, S.; Capone, R.; Azimova, R.; Kagan, B. L.; Nussinov, R.; Lal, R. Proc. Natl. Acad. Sci. U.S.A. 2010, 107, 6538-6543
- (2010) Proc. Natl. Acad. Sci. U.S.A. , vol.107 , pp. 6538-6543
- Jang, H.¹ Arce, F.T.² Ramachandran, S.³ Capone, R.⁴ Azimova, R.⁵ Kagan, B.L.⁶ Nussinov, R.⁷ Lal, R.⁸

11
- 0032483035
- Coles, M.; Bicknell, W.; Watson, A. A.; Fairlie, D. P.; Craik, D. J. Biochemistry 1998, 37, 11064-11077
- (1998) Biochemistry , vol.37 , pp. 11064-11077
- Coles, M.¹ Bicknell, W.² Watson, A.A.³ Fairlie, D.P.⁴ Craik, D.J.⁵

12
- 34547920308
- Jarvet, J.; Danielsson, J.; Damberg, P.; Oleszczuk, M.; Graslund, A. J. Biomol. NMR 2007, 39, 63-72
- (2007) J. Biomol. NMR , vol.39 , pp. 63-72
- Jarvet, J.¹ Danielsson, J.² Damberg, P.³ Oleszczuk, M.⁴ Graslund, A.⁵

13
- 0036438914
- Crescenzi, O.; Tomaselli, S.; Guerrini, R.; Salvadori, S.; D'Ursi, A. M.; Temussi, P. A.; Picone, D. Eur. J. Biochem. 2002, 269, 5642-5648
- (2002) Eur. J. Biochem. , vol.269 , pp. 5642-5648
- Crescenzi, O.¹ Tomaselli, S.² Guerrini, R.³ Salvadori, S.⁴ D'Ursi, A.M.⁵ Temussi, P.A.⁶ Picone, D.⁷

14
- 10744219665
- Hou, L.; Shao, H.; Zhang, Y.; Li, H.; Menon, N. K.; Neuhaus, E. B.; Brewer, J. M.; Byeon, I.-J. L.; Ray, D. G.; Vitek, M. P. J. Am. Chem. Soc. 2004, 126, 1992-2005
- (2004) J. Am. Chem. Soc. , vol.126 , pp. 1992-2005
- Hou, L.¹ Shao, H.² Zhang, Y.³ Li, H.⁴ Menon, N.K.⁵ Neuhaus, E.B.⁶ Brewer, J.M.⁷ Byeon, I.-J.L.⁸ Ray, D.G.⁹ Vitek, M.P.¹⁰

15
- 34247234602
- Sgourakis, N. G.; Yan, Y.; McCallum, S. A.; Wang, C.; Garcia, A. E. J. Mol. Biol. 2007, 368, 1448-1457
- (2007) J. Mol. Biol. , vol.368 , pp. 1448-1457
- Sgourakis, N.G.¹ Yan, Y.² McCallum, S.A.³ Wang, C.⁴ Garcia, A.E.⁵

16
- 84954358028
- Yang, M.; Teplow, D. B. J. Mol. Biol. 2008, 384, 450-464
- (2008) J. Mol. Biol. , vol.384 , pp. 450-464
- Yang, M.¹ Teplow, D.B.²

17
- 45949099262
- Jang, S.; Shin, S. J. Phys. Chem. B 2008, 112, 3479-3484
- (2008) J. Phys. Chem. B , vol.112 , pp. 3479-3484
- Jang, S.¹ Shin, S.²

18
- 79957588075
- Anand, P.; Hansmann, U. H. E. Mol. Simul. 2011, 37, 440-448
- (2011) Mol. Simul. , vol.37 , pp. 440-448
- Anand, P.¹ Hansmann, U.H.E.²

19
- 84868258529
- Lockhart, C.; Kim, S.; Klimov, D. K. J. Phys. Chem. B 2012, 116, 12922-12932
- (2012) J. Phys. Chem. B , vol.116 , pp. 12922-12932
- Lockhart, C.¹ Kim, S.² Klimov, D.K.³

20
- 84860849103
- Ryan, T. M.; Friedhuber, A.; Lind, M.; Howlett, G. J.; Masters, C.; Roberts, B. R. J. Biol. Chem. 2012, 287, 16947-16954
- (2012) J. Biol. Chem. , vol.287 , pp. 16947-16954
- Ryan, T.M.¹ Friedhuber, A.² Lind, M.³ Howlett, G.J.⁴ Masters, C.⁵ Roberts, B.R.⁶

21
- 33645786604
- Buck, M.; Bouguet-Bonnet, S.; Pastor, R. W.; MacKerell, A. D. Biophys. J. 2006, 90, L36-L38
- (2006) Biophys. J. , vol.90
- Buck, M.¹ Bouguet-Bonnet, S.² Pastor, R.W.³ Mackerell, A.D.⁴

22
- 69549145714
- Takeda, T.; Klimov, D. K. Proteins: Struct. Funct. Bioinf. 2009, 77, 1-13
- (2009) Proteins: Struct. Funct. Bioinf. , vol.77 , pp. 1-13
- Takeda, T.¹ Klimov, D.K.²

23
- 67650079408
- Takeda, T.; Klimov, D. K. J. Phys. Chem. B 2009, 113, 6692-6702
- (2009) J. Phys. Chem. B , vol.113 , pp. 6692-6702
- Takeda, T.¹ Klimov, D.K.²

24
- 77957256708
- Vitalis, A.; Caflisch, A. J. Mol. Biol. 2010, 403, 148-165
- (2010) J. Mol. Biol. , vol.403 , pp. 148-165
- Vitalis, A.¹ Caflisch, A.²

25
- 0001616080
- Sugita, Y.; Okamoto, Y. Chem. Phys. Lett. 1999, 114, 141-151
- (1999) Chem. Phys. Lett. , vol.114 , pp. 141-151
- Sugita, Y.¹ Okamoto, Y.²

26
- 0042415783
- Kale, L.; Skeel, R.; Bhandarkar, M.; Brunner, R.; Gursoy, A.; Krawetz, N.; Phillips, J.; Shinozaki, A.; Varadarajan, K.; Schulten, K. J. Comput. Phys. 1999, 151, 283-312
- (1999) J. Comput. Phys. , vol.151 , pp. 283-312
- Kale, L.¹ Skeel, R.² Bhandarkar, M.³ Brunner, R.⁴ Gursoy, A.⁵ Krawetz, N.⁶ Phillips, J.⁷ Shinozaki, A.⁸ Varadarajan, K.⁹ Schulten, K.¹⁰

27
- 0020997912
- Kabsch, W.; Sander, C. Biopolymers 1983, 22, 2577-2637
- (1983) Biopolymers , vol.22 , pp. 2577-2637
- Kabsch, W.¹ Sander, C.²

28
- 0029619259
- Frishman, D.; Argos, P. Proteins: Struct. Funct. Gen. 1995, 23, 566-579
- (1995) Proteins: Struct. Funct. Gen. , vol.23 , pp. 566-579
- Frishman, D.¹ Argos, P.²

29
- 33646987405
- Ferrenberg, A. M.; Swendsen, R. H. Phys. Rev. Lett. 1989, 63, 1195-1198
- (1989) Phys. Rev. Lett. , vol.63 , pp. 1195-1198
- Ferrenberg, A.M.¹ Swendsen, R.H.²

30
- 0000870658
- Shea, J. E.; Nochomovitz, Y. D.; Guo, Z.; Brooks, C. L. J. Chem. Phys. 1998, 109, 2895-2903
- (1998) J. Chem. Phys. , vol.109 , pp. 2895-2903
- Shea, J.E.¹ Nochomovitz, Y.D.² Guo, Z.³ Brooks, C.L.⁴

31
- 68949122827
- Takeda, T.; Klimov, D. K. Biophys. J. 2009, 96, 4428-4437
- (2009) Biophys. J. , vol.96 , pp. 4428-4437
- Takeda, T.¹ Klimov, D.K.²

32
- 42449155493
- Itoh, S. G.; Okamoto, Y. J. Phys. Chem. B 2008, 112, 2767-2770
- (2008) J. Phys. Chem. B , vol.112 , pp. 2767-2770
- Itoh, S.G.¹ Okamoto, Y.²

33
- 0017868338
- Chou, P. Y.; Fasman, G. D. Annu. Rev. Biochem. 1978, 47, 251-276
- (1978) Annu. Rev. Biochem. , vol.47 , pp. 251-276
- Chou, P.Y.¹ Fasman, G.D.²

34
- 30744433878
- Petkova, A. T.; Yau, W.-M.; Tycko, R. Biochemistry 2006, 45, 498-512
- (2006) Biochemistry , vol.45 , pp. 498-512
- Petkova, A.T.¹ Yau, W.-M.² Tycko, R.³

35
- 67249117859
- Nerelius, C.; Sandegren, A.; Sargsyan, H.; Raunak, R.; Leijonmarck, H.; Chatterjee, U.; Fisahn, A.; Imarisio, S.; Lomas, D. A.; Crowther, D. C. Proc. Natl. Acad. Sci. U.S.A. 2009, 106, 9191-9196
- (2009) Proc. Natl. Acad. Sci. U.S.A. , vol.106 , pp. 9191-9196
- Nerelius, C.¹ Sandegren, A.² Sargsyan, H.³ Raunak, R.⁴ Leijonmarck, H.⁵ Chatterjee, U.⁶ Fisahn, A.⁷ Imarisio, S.⁸ Lomas, D.A.⁹ Crowther, D.C.¹⁰

36
- 76749102996
- Li, H.; Monien, B. H.; Fradinger, E. A.; Urbanc, B.; Bitan, G. Biochemistry 2010, 49, 1259-1267
- (2010) Biochemistry , vol.49 , pp. 1259-1267
- Li, H.¹ Monien, B.H.² Fradinger, E.A.³ Urbanc, B.⁴ Bitan, G.⁵

37
- 52949100595
- Fradinger, E. A.; Monien, B. H.; Urbanc, B.; Lomakin, A.; Tan, M.; Li, H.; Spring, S. M.; Condron, M. M.; Cruz, L.; Xie, C.-W. Proc. Natl. Acad. Sci. U.S.A. 2008, 105, 14175-14180
- (2008) Proc. Natl. Acad. Sci. U.S.A. , vol.105 , pp. 14175-14180
- Fradinger, E.A.¹ Monien, B.H.² Urbanc, B.³ Lomakin, A.⁴ Tan, M.⁵ Li, H.⁶ Spring, S.M.⁷ Condron, M.M.⁸ Cruz, L.⁹ Xie, C.-W.¹⁰

* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.