-
1
-
-
0001473417
-
Global litter production, pools, and turnover times: estimates from measurement data and regression models
-
Matthews, E., Global litter production, pools, and turnover times: estimates from measurement data and regression models. J. Geophys. Res. 1997, 102, 18771-18800.
-
(1997)
J. Geophys. Res.
, vol.102
, pp. 18771-18800
-
-
Matthews, E.1
-
2
-
-
79955614493
-
Roles of arbuscular mycorrhizas in plant nutrition and growth: new paradigms from cellular to ecosystem scales
-
Smith, S. E., Smith, F. A., Roles of arbuscular mycorrhizas in plant nutrition and growth: new paradigms from cellular to ecosystem scales. Annu. Rev. Plant Biol. 2011, 62, 227-250.
-
(2011)
Annu. Rev. Plant Biol.
, vol.62
, pp. 227-250
-
-
Smith, S.E.1
Smith, F.A.2
-
3
-
-
84864390393
-
The rhizosphere microbiome and plant health
-
Berendsen, R. L., Pieterse, C. M., Bakker, P. A., The rhizosphere microbiome and plant health. Trends Plant Sci. 2012, 17, 478-86.
-
(2012)
Trends Plant Sci.
, vol.17
, pp. 478-486
-
-
Berendsen, R.L.1
Pieterse, C.M.2
Bakker, P.A.3
-
4
-
-
33745060740
-
The influence of biotic interactions on soil biodiversity
-
Wardle, D. A., The influence of biotic interactions on soil biodiversity. Ecol. Lett. 2006, 9, 870-886.
-
(2006)
Ecol. Lett
, vol.9
, pp. 870-886
-
-
Wardle, D.A.1
-
5
-
-
0001782023
-
Beyond the biomass: compositional and functional analysis of soil microbial communities
-
Ritz, K., Dighton, J., Giller, K. E. (Eds.), Wiley, Chichester
-
Torsvik, V., Goksøyr, J, Daae, F. L., Sørheim, R. et al., Beyond the biomass: compositional and functional analysis of soil microbial communities, in: Ritz, K., Dighton, J., Giller, K. E. (Eds.), Use of DNA to Determine the Diversity of Microbial Communities, Wiley, Chichester 1994, pp. 39-48.
-
(1994)
Use of DNA to Determine the Diversity of Microbial Communities
, pp. 39-48
-
-
Torsvik, V.1
Goksøyr, J.2
Daae, F.L.3
Sørheim, R.4
-
7
-
-
0028946084
-
Phylogenetic identification and in situ detection of individual microbial cells without cultivation
-
Amann, R. I., Ludwig, W., Schleifer, K. H., Phylogenetic identification and in situ detection of individual microbial cells without cultivation. FEMS Microbiol. Rev. 1995, 59, 143-169.
-
(1995)
FEMS Microbiol. Rev.
, vol.59
, pp. 143-169
-
-
Amann, R.I.1
Ludwig, W.2
Schleifer, K.H.3
-
8
-
-
77955312030
-
Exploring research frontiers in microbiology: the challenge of metagenomics in soil microbiology
-
Mocali, S., Benedetti, A., Exploring research frontiers in microbiology: the challenge of metagenomics in soil microbiology. Res. Microbiol. 2010, 161, 497-505.
-
(2010)
Res. Microbiol.
, vol.161
, pp. 497-505
-
-
Mocali, S.1
Benedetti, A.2
-
9
-
-
55549109781
-
Series: Soil Biology
-
Nannipieri, P., Smalla, K. (Eds.). Springer Verlag, Heidelberg, Germany
-
Nannipieri, P., in: Nannipieri, P., Smalla, K. (Eds.). Role of Stabilised Enzymes in Microbial Ecology and Enzyme Extraction from Soil with Potential Applications in Soil Proteomics. Series: Soil Biology, Springer Verlag, Heidelberg, Germany, 2006, 8, pp. 75-94.
-
(2006)
Role of Stabilised Enzymes in Microbial Ecology and Enzyme Extraction from Soil with Potential Applications in Soil Proteomics
, vol.8
, pp. 75-94
-
-
Nannipieri, P.1
-
11
-
-
79953210780
-
Metagenomic analyses: past and future trends
-
Simon, C., Daniel, R., Metagenomic analyses: past and future trends. Appl. Environ. Microbiol. 2011, 77, 1153-1161.
-
(2011)
Appl. Environ. Microbiol.
, vol.77
, pp. 1153-1161
-
-
Simon, C.1
Daniel, R.2
-
12
-
-
0032986790
-
Combination of fluorescent in situ hybridization and microautoradiography-a new tool for structure-function analyses in microbial ecology
-
Lee, N., Nielsen, P. H., Andreasen, K. H., Juretschko, S. et al., Combination of fluorescent in situ hybridization and microautoradiography-a new tool for structure-function analyses in microbial ecology. Appl. Environ. Microbiol. 1999, 65, 1289-1297.
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 1289-1297
-
-
Lee, N.1
Nielsen, P.H.2
Andreasen, K.H.3
Juretschko, S.4
-
13
-
-
84875164657
-
CARD-FISH for environmental microorganisms: technical advancement and future applications
-
Kubota, K., CARD-FISH for environmental microorganisms: technical advancement and future applications. Microbes Environ. 2013, 28, 3-12.
-
(2013)
Microbes Environ
, vol.28
, pp. 3-12
-
-
Kubota, K.1
-
14
-
-
0038265142
-
Resolving functional diversity in relation to microbial community structure in soil: exploiting genomics and stable isotope probing
-
Wellington, E. M., Berry, A., Krsek, M., Resolving functional diversity in relation to microbial community structure in soil: exploiting genomics and stable isotope probing. Curr. Opin. Microbiol. 2003, 6, 295-301.
-
(2003)
Curr. Opin. Microbiol.
, vol.6
, pp. 295-301
-
-
Wellington, E.M.1
Berry, A.2
Krsek, M.3
-
15
-
-
24644499924
-
Microbial gene expression in soil: methods, applications and challenges
-
Saleh-Lakha, S., Miller, M., Campbell, R. G., Schneider, K. et al., Microbial gene expression in soil: methods, applications and challenges. J. Microbiol. Methods 2005, 63, 1-19.
-
(2005)
J. Microbiol. Methods
, vol.63
, pp. 1-19
-
-
Saleh-Lakha, S.1
Miller, M.2
Campbell, R.G.3
Schneider, K.4
-
16
-
-
84867808440
-
Application of metatranscriptomics to soil environments
-
Carvalhais, L. C., Dennis, P. G., Tyson, G. W., Schenk, P. M., Application of metatranscriptomics to soil environments. J. Microbiol. Methods 2012, 91, 246-251.
-
(2012)
J. Microbiol. Methods
, vol.91
, pp. 246-251
-
-
Carvalhais, L.C.1
Dennis, P.G.2
Tyson, G.W.3
Schenk, P.M.4
-
17
-
-
84856373733
-
Culture-independent methods for studying environmental microorganisms: methods, application, and perspective
-
Su, C., Lei, L., Duan, Y., Zhang, K. Q. et al., Culture-independent methods for studying environmental microorganisms: methods, application, and perspective. Appl. Microbiol. Biotechnol. 2012, 93, 993-1003.
-
(2012)
Appl. Microbiol. Biotechnol.
, vol.93
, pp. 993-1003
-
-
Su, C.1
Lei, L.2
Duan, Y.3
Zhang, K.Q.4
-
18
-
-
73149103678
-
Soil metaproteomics: a review of an emerging environmental science. Significance, methodology and perspectives
-
Bastida, F., Moreno, J. L., Nicolas, C., Hernandez, T. et al., Soil metaproteomics: a review of an emerging environmental science. Significance, methodology and perspectives. Eur. J. Soil Science 2009, 60, 845-859.
-
(2009)
Eur. J. Soil Science
, vol.60
, pp. 845-859
-
-
Bastida, F.1
Moreno, J.L.2
Nicolas, C.3
Hernandez, T.4
-
19
-
-
63849104493
-
Environmental proteomics: a paradigm shift in characterizing microbial activities at the molecular level
-
Keller, M., Hettich, R., Environmental proteomics: a paradigm shift in characterizing microbial activities at the molecular level. Microbiol. Mol. Biol. Rev. 2009, 73, 62-70.
-
(2009)
Microbiol. Mol. Biol. Rev.
, vol.73
, pp. 62-70
-
-
Keller, M.1
Hettich, R.2
-
20
-
-
84859573112
-
Exploring mixed microbial community functioning: recent advances in metaproteomics
-
Siggins, A., Gunnigle, E., Abram, F., Exploring mixed microbial community functioning: recent advances in metaproteomics. FEMS Microbiol. Ecol. 2012, 80, 265-280.
-
(2012)
FEMS Microbiol. Ecol.
, vol.80
, pp. 265-280
-
-
Siggins, A.1
Gunnigle, E.2
Abram, F.3
-
21
-
-
77149152780
-
Environmental proteomics: analysis of structure and function of microbial communities
-
Schneider, T., Riedel, K., Environmental proteomics: analysis of structure and function of microbial communities. Proteomics 2010, 10, 785-798.
-
(2010)
Proteomics
, vol.10
, pp. 785-798
-
-
Schneider, T.1
Riedel, K.2
-
22
-
-
66349100408
-
Microbial community proteomics: elucidating the catalysts and metabolic mechanisms that drive the Earth's biogeochemical cycles
-
Wilmes, P., Bond, P. L., Microbial community proteomics: elucidating the catalysts and metabolic mechanisms that drive the Earth's biogeochemical cycles. Curr. Opin. Microbiol. 2009, 12, 310-317.
-
(2009)
Curr. Opin. Microbiol.
, vol.12
, pp. 310-317
-
-
Wilmes, P.1
Bond, P.L.2
-
23
-
-
78649854658
-
Direct cellular lysis/protein extraction protocol for soil metaproteomics
-
Chourey, K., Jansson, J., VerBerkmoes, N., Shah, M. et al., Direct cellular lysis/protein extraction protocol for soil metaproteomics. J. Proteome Res. 2010, 9, 6615-6622.
-
(2010)
J. Proteome Res.
, vol.9
, pp. 6615-6622
-
-
Chourey, K.1
Jansson, J.2
VerBerkmoes, N.3
Shah, M.4
-
24
-
-
33745966233
-
A universal and rapid protocol for protein extraction from recalcitrant plant tissues for proteomic analysis
-
Wang, W., Vignani, R., Scali, M., Cresti, M., A universal and rapid protocol for protein extraction from recalcitrant plant tissues for proteomic analysis. Electrophoresis 2006, 27, 2782-2786.
-
(2006)
Electrophoresis
, vol.27
, pp. 2782-2786
-
-
Wang, W.1
Vignani, R.2
Scali, M.3
Cresti, M.4
-
25
-
-
84862329704
-
Soil metaproteomics-comparative evaluation of protein extraction protocols
-
Keiblinger, K. M., Wilhartitz, I. C., Schneider, T., Roschitzki, B. et al., Soil metaproteomics-comparative evaluation of protein extraction protocols. Soil Biol. Biochem. 2012, 54, 14-24.
-
(2012)
Soil Biol. Biochem.
, vol.54
, pp. 14-24
-
-
Keiblinger, K.M.1
Wilhartitz, I.C.2
Schneider, T.3
Roschitzki, B.4
-
26
-
-
77950566355
-
Microbial protein in soil: influence of extraction method and C amendment on extraction and recovery
-
Taylor, E. B., Williams, M. A., Microbial protein in soil: influence of extraction method and C amendment on extraction and recovery. Microbiol. Ecol. 2010, 59, 390-399.
-
(2010)
Microbiol. Ecol.
, vol.59
, pp. 390-399
-
-
Taylor, E.B.1
Williams, M.A.2
-
27
-
-
34547347640
-
Functional metaproteome analysis of protein extracts from contaminated soil and groundwater
-
Benndorf, D., Balcke, G. U., Harms, H., von Bergen, M., Functional metaproteome analysis of protein extracts from contaminated soil and groundwater. ISME J. 2007, 1, 224-234.
-
(2007)
ISME J.
, vol.1
, pp. 224-234
-
-
Benndorf, D.1
Balcke, G.U.2
Harms, H.3
von Bergen, M.4
-
28
-
-
12944295105
-
A proteomic fingerprint of dissolved organic carbon and of soil particles
-
Schulze, W. X., Gleixner, G., Kaiser, K., Guggenberger, G. et al., A proteomic fingerprint of dissolved organic carbon and of soil particles. Oecologia 2005, 142, 335-343.
-
(2005)
Oecologia
, vol.142
, pp. 335-343
-
-
Schulze, W.X.1
Gleixner, G.2
Kaiser, K.3
Guggenberger, G.4
-
29
-
-
53149121393
-
Series: Soil Biology
-
Nannipieri, P., Smalla, K. (Eds.). Springer Verlag, Heidelberg, Germany
-
Nielsen, K. M., Calamai, L., Pietramellara, G., in: Nannipieri, P., Smalla, K. (Eds.). Stabilization of Extracellular DNA and Proteins by Transient Binding to Various Soil Components. Series: Soil Biology, Springer Verlag, Heidelberg, Germany, 2006, 8, pp. 141-157.
-
(2006)
Stabilization of Extracellular DNA and Proteins by Transient Binding to Various Soil Components
, vol.8
, pp. 141-157
-
-
Nielsen, K.M.1
Calamai, L.2
Pietramellara, G.3
-
30
-
-
84859758547
-
Soil solid phases effects on the proteomic analysis of Cupriavidus metallidurans CH34
-
Giagnoni, L., Magherini, F., Landi, L., Taghavie, S. et al., Soil solid phases effects on the proteomic analysis of Cupriavidus metallidurans CH34. Biol. Fert. Soils 2012, 48, 425-433.
-
(2012)
Biol. Fert. Soils
, vol.48
, pp. 425-433
-
-
Giagnoni, L.1
Magherini, F.2
Landi, L.3
Taghavie, S.4
-
31
-
-
0036944084
-
Protein measurement in forest litter
-
Criquet, S., Farnet, A. M., Ferre, E., Protein measurement in forest litter. Biol. Fert. Soils 2002, 35, 307-313.
-
(2002)
Biol. Fert. Soils
, vol.35
, pp. 307-313
-
-
Criquet, S.1
Farnet, A.M.2
Ferre, E.3
-
32
-
-
0038061528
-
Isolation of extracellular protein from greenhouse soil
-
Murase, A., Yoneda, M., Ueno, R., Yonebayashi, K., Isolation of extracellular protein from greenhouse soil. Soil Biol. Biochem. 2003, 35, 733-736.
-
(2003)
Soil Biol. Biochem.
, vol.35
, pp. 733-736
-
-
Murase, A.1
Yoneda, M.2
Ueno, R.3
Yonebayashi, K.4
-
33
-
-
22044456721
-
Preparation of protein extracts from recalcitrant plant tissues: an evaluation of different methods for two-dimensional gel electrophoresis analysis
-
Carpentier, S. C., Witters, E., Laukens, K., Deckers, P. et al., Preparation of protein extracts from recalcitrant plant tissues: an evaluation of different methods for two-dimensional gel electrophoresis analysis. Proteomics 2005, 5, 2497-2507.
-
(2005)
Proteomics
, vol.5
, pp. 2497-2507
-
-
Carpentier, S.C.1
Witters, E.2
Laukens, K.3
Deckers, P.4
-
34
-
-
70350443639
-
Improving soil protein extraction for metaproteome analysis and glomalin-related soil protein detection
-
Chen, S., Rillig, M. C., Wang, W., Improving soil protein extraction for metaproteome analysis and glomalin-related soil protein detection. Proteomics 2009, 9, 4970-4973.
-
(2009)
Proteomics
, vol.9
, pp. 4970-4973
-
-
Chen, S.1
Rillig, M.C.2
Wang, W.3
-
35
-
-
70350273412
-
Improving protein extraction and separation methods for investigating the metaproteome of anaerobic benzene communities within sediments
-
Benndorf, D., Vogt, C., Jehmlich, N., Schmidt, Y. et al., Improving protein extraction and separation methods for investigating the metaproteome of anaerobic benzene communities within sediments. Biodegradation 2009, 20, 737-750.
-
(2009)
Biodegradation
, vol.20
, pp. 737-750
-
-
Benndorf, D.1
Vogt, C.2
Jehmlich, N.3
Schmidt, Y.4
-
36
-
-
82355187612
-
Feasibility of a cell separation-proteomic based method for soils with different edaphic properties and microbial biomass
-
Bastida, F., Algora, C., Hernández, T., García, C., Feasibility of a cell separation-proteomic based method for soils with different edaphic properties and microbial biomass. Soil Biol. Biochem. 2012, 45, 136-138.
-
(2012)
Soil Biol. Biochem.
, vol.45
, pp. 136-138
-
-
Bastida, F.1
Algora, C.2
Hernández, T.3
García, C.4
-
37
-
-
77956406749
-
Proteome analysis of fungal and bacterial involvement in leaf litter decomposition
-
Schneider, T., Gerrits, B., Gassmann, R., Schmid, E. et al., Proteome analysis of fungal and bacterial involvement in leaf litter decomposition. Proteomics 2010, 10, 1819-1830.
-
(2010)
Proteomics
, vol.10
, pp. 1819-1830
-
-
Schneider, T.1
Gerrits, B.2
Gassmann, R.3
Schmid, E.4
-
38
-
-
84865341467
-
Who is who in litter decomposition? Metaproteomics reveals major microbial players and their biogeochemical functions
-
Schneider, T., Keiblinger, K. M., Schmid, E., Sterflinger-Gleixner, K. et al., Who is who in litter decomposition? Metaproteomics reveals major microbial players and their biogeochemical functions. ISME J. 2012, 6, 1749-1762.
-
(2012)
ISME J.
, vol.6
, pp. 1749-1762
-
-
Schneider, T.1
Keiblinger, K.M.2
Schmid, E.3
Sterflinger-Gleixner, K.4
-
39
-
-
78751487945
-
Extraction of microbial proteome from soil: potential and limitations assessed through a model study
-
Giagnoni, L., Magherini, F., Landi, L., Taghavi, S. et al., Extraction of microbial proteome from soil: potential and limitations assessed through a model study. Eur. J. Soil Sci. 2011, 62, 74-81.
-
(2011)
Eur. J. Soil Sci.
, vol.62
, pp. 74-81
-
-
Giagnoni, L.1
Magherini, F.2
Landi, L.3
Taghavi, S.4
-
40
-
-
0016711037
-
High resolution two-dimensional electrophoresis of proteins
-
ÓFarrel, P. H., High resolution two-dimensional electrophoresis of proteins. J. Biol. Chem. 1975, 250, 4007-4021.
-
(1975)
J. Biol. Chem.
, vol.250
, pp. 4007-4021
-
-
ÓFarrel, P.H.1
-
41
-
-
70349760656
-
High-resolution two-dimensional electrophoresis
-
Weiss, W., Görg, A., High-resolution two-dimensional electrophoresis. Methods Mol. Biol. 2009, 564, 13-32.
-
(2009)
Methods Mol. Biol.
, vol.564
, pp. 13-32
-
-
Weiss, W.1
Görg, A.2
-
42
-
-
33947600879
-
Metaproteomic analysis of Chesapeake Bay microbial communities
-
Kan, J., Hanson, T. E., Ginter, J.M., Wang, K. et al., Metaproteomic analysis of Chesapeake Bay microbial communities. Saline Systems 2005, 1, 7-20.
-
(2005)
Saline Systems
, vol.1
, pp. 7-20
-
-
Kan, J.1
Hanson, T.E.2
Ginter, J.M.3
Wang, K.4
-
43
-
-
33847177982
-
Metaproteomics approach to study the functionality of the microbiota in the human infant gastrointestinal tract
-
Klaassens, E. S., de Vos, W. M., Vaughan, E. E., Metaproteomics approach to study the functionality of the microbiota in the human infant gastrointestinal tract. Appl. Environ. Microbiol. 2007, 73, 1388-1392.
-
(2007)
Appl. Environ. Microbiol.
, vol.73
, pp. 1388-1392
-
-
Klaassens, E.S.1
de Vos, W.M.2
Vaughan, E.E.3
-
44
-
-
44249115619
-
Metaproteomics provides functional insight into activated sludge wastewater treatment
-
Wilmes, P., Wexler, M., Bond, P. L., Metaproteomics provides functional insight into activated sludge wastewater treatment. PLoS One 2008, 3, e1778.
-
(2008)
PLoS One
, vol.3
-
-
Wilmes, P.1
Wexler, M.2
Bond, P.L.3
-
45
-
-
79952420879
-
Characterization of metaproteomics in crop rhizospheric soil
-
Wang, H. B., Zhang, Z. X., Li, H., He, H. B. et al., Characterization of metaproteomics in crop rhizospheric soil. J. Proteome Res. 2011, 10, 932-940.
-
(2011)
J. Proteome Res.
, vol.10
, pp. 932-940
-
-
Wang, H.B.1
Zhang, Z.X.2
Li, H.3
He, H.B.4
-
46
-
-
79957788650
-
Comparative metaproteomic analysis on consecutively Rehmannia glutinosa-monocultured rhizosphere soil
-
Wu, L., Wang, H., Zhang, Z., Lin, R. et al., Comparative metaproteomic analysis on consecutively Rehmannia glutinosa-monocultured rhizosphere soil. PLoS One 2011, 6, e20611.
-
(2011)
PLoS One
, vol.6
-
-
Wu, L.1
Wang, H.2
Zhang, Z.3
Lin, R.4
-
47
-
-
0033885949
-
Measuring gene expression by quantitative proteome analysis
-
Gygi, S. P., Rist, B., Aebersold, R., Measuring gene expression by quantitative proteome analysis. Curr. Opin. Biotechnol. 2000, 11, 396-401.
-
(2000)
Curr. Opin. Biotechnol.
, vol.11
, pp. 396-401
-
-
Gygi, S.P.1
Rist, B.2
Aebersold, R.3
-
48
-
-
0034786119
-
An evaluation of the use of two-dimensional gel electrophoresis in proteomics
-
Ong, S. E., Pandey, A., An evaluation of the use of two-dimensional gel electrophoresis in proteomics. Biomol. Eng. 2001, 18, 195-205.
-
(2001)
Biomol. Eng.
, vol.18
, pp. 195-205
-
-
Ong, S.E.1
Pandey, A.2
-
49
-
-
84878666768
-
The new horizon in 2D electrophoresis-new technology to increase resolution and sensitivity
-
Moche, M., Albrecht, D., Maaß, S., Hecker, M. et al., The new horizon in 2D electrophoresis-new technology to increase resolution and sensitivity. Electrophoresis 2013, 34, 1510-1518.
-
(2013)
Electrophoresis
, vol.34
, pp. 1510-1518
-
-
Moche, M.1
Albrecht, D.2
Maaß, S.3
Hecker, M.4
-
50
-
-
79959744012
-
Structure and function of the symbiosis partners of the lung lichen (Lobaria pulmonaria L. Hoffm.) analyzed by metaproteomics
-
Schneider, T., Schmid, E., de Castro, J. V. Jr., Cardinale, M. et al., Structure and function of the symbiosis partners of the lung lichen (Lobaria pulmonaria L. Hoffm.) analyzed by metaproteomics. Proteomics 2011, 11, 2752-2756.
-
(2011)
Proteomics
, vol.11
, pp. 2752-2756
-
-
Schneider, T.1
Schmid, E.2
de Castro, J.V.J.3
Cardinale, M.4
-
51
-
-
77951497989
-
Comparative metaproteomics reveals ocean-scale shifts in microbial nutrient utilization and energy transduction
-
Morris, R. M., Nunn, B. L., Frazar, C., Goodlett, D. R. et al., Comparative metaproteomics reveals ocean-scale shifts in microbial nutrient utilization and energy transduction. ISME J. 2010, 4, 673-685.
-
(2010)
ISME J.
, vol.4
, pp. 673-685
-
-
Morris, R.M.1
Nunn, B.L.2
Frazar, C.3
Goodlett, D.R.4
-
52
-
-
84860475413
-
Method development for metaproteomic analyses of marine biofilms
-
Leary, D. H., Hervey, W. J. 4th, Li, R. W., Deschamps, J. R. et al., Method development for metaproteomic analyses of marine biofilms. Anal. Chem. 2012, 84, 4006-4013.
-
(2012)
Anal. Chem.
, vol.84
, pp. 4006-4013
-
-
Leary, D.H.1
Hervey IV, W.J.2
Li, R.W.3
Deschamps, J.R.4
-
53
-
-
84860488672
-
Substrate-controlled succession of marine bacterioplankton populations induced by a phytoplankton bloom
-
Teeling, H., Fuchs, B. M., Becher, D., Klockow, C. et al., Substrate-controlled succession of marine bacterioplankton populations induced by a phytoplankton bloom. Science 2012, 336, 608-611.
-
(2012)
Science
, vol.336
, pp. 608-611
-
-
Teeling, H.1
Fuchs, B.M.2
Becher, D.3
Klockow, C.4
-
54
-
-
76149096479
-
A metaproteomic analysis of the human salivary microbiota by three-dimensional peptide fractionation and tandem mass spectrometry
-
Rudney, J. D., Xie, H., Rhodus, N. L., Ondrey, F. G. et al., A metaproteomic analysis of the human salivary microbiota by three-dimensional peptide fractionation and tandem mass spectrometry. Mol. Oral Microbiol. 2010, 25, 38-49.
-
(2010)
Mol. Oral Microbiol.
, vol.25
, pp. 38-49
-
-
Rudney, J.D.1
Xie, H.2
Rhodus, N.L.3
Ondrey, F.G.4
-
55
-
-
58549089276
-
Shotgun metaproteomics of the human distal gut microbiota
-
Verberkmoes, N. C., Russell, A. L., Shah, M., Godzik, A. et al., Shotgun metaproteomics of the human distal gut microbiota. ISME J. 2009, 3, 179-189.
-
(2009)
ISME J.
, vol.3
, pp. 179-189
-
-
Verberkmoes, N.C.1
Russell, A.L.2
Shah, M.3
Godzik, A.4
-
56
-
-
84855915896
-
Comparative metaproteomics and diversity analysis of human intestinal microbiota testifies for its temporal stability and expression of core functions
-
Kolmeder, C. A., de Been, M., Nikkilä, J., Ritamo, I. et al., Comparative metaproteomics and diversity analysis of human intestinal microbiota testifies for its temporal stability and expression of core functions. PLoS One 2012, 7, e29913.
-
(2012)
PLoS One
, vol.7
-
-
Kolmeder, C.A.1
de Been, M.2
Nikkilä, J.3
Ritamo, I.4
-
57
-
-
77950669475
-
Quantitative analysis of proteome coverage and recovery rates for upstream fractionation methods in proteomics
-
Fang, Y., Robinson, D. P., Foster, L. J., Quantitative analysis of proteome coverage and recovery rates for upstream fractionation methods in proteomics. J. Proteome Res. 2010, 9, 1902-1912.
-
(2010)
J. Proteome Res.
, vol.9
, pp. 1902-1912
-
-
Fang, Y.1
Robinson, D.P.2
Foster, L.J.3
-
58
-
-
77950641486
-
Workflow comparison for label-free, quantitative secretome proteomics for cancer biomarker discovery: method evaluation, differential analysis, and verification in serum
-
Piersma, S. R., Fiedler, U., Span, S., Lingnau, A. et al., Workflow comparison for label-free, quantitative secretome proteomics for cancer biomarker discovery: method evaluation, differential analysis, and verification in serum. J. Proteome Res. 2010, 9, 1913-1922.
-
(2010)
J. Proteome Res.
, vol.9
, pp. 1913-1922
-
-
Piersma, S.R.1
Fiedler, U.2
Span, S.3
Lingnau, A.4
-
59
-
-
0035356574
-
High-performance liquid chromatography-electrospray ionization mass spectrometry using monolithic capillary columns for proteomic studies
-
Premstaller, A., Oberacher, H., Walcher, W., Timperio, A. M. et al., High-performance liquid chromatography-electrospray ionization mass spectrometry using monolithic capillary columns for proteomic studies. Anal. Chem. 2001, 73, 2390-2396.
-
(2001)
Anal. Chem.
, vol.73
, pp. 2390-2396
-
-
Premstaller, A.1
Oberacher, H.2
Walcher, W.3
Timperio, A.M.4
-
60
-
-
4644265806
-
Ultra-performance liquid chromatography coupled to quadrupole-orthogonal time-of-flight mass spectrometry
-
Plumb, R., Castro-Perez, J., Granger, J., Beattie, I. et al., Ultra-performance liquid chromatography coupled to quadrupole-orthogonal time-of-flight mass spectrometry. Rapid Commun. Mass. Spectrom. 2004, 18, 2331-2337.
-
(2004)
Rapid Commun. Mass. Spectrom.
, vol.18
, pp. 2331-2337
-
-
Plumb, R.1
Castro-Perez, J.2
Granger, J.3
Beattie, I.4
-
61
-
-
29244448703
-
Parts per million mass accuracy on an Orbitrap mass spectrometer via lock mass injection into a C-trap
-
Olsen, J. V., de Godoy, L. M., Li, G., Macek, B. et al., Parts per million mass accuracy on an Orbitrap mass spectrometer via lock mass injection into a C-trap. Mol. Cell. Proteomics 2005, 4, 2010-2201.
-
(2005)
Mol. Cell. Proteomics
, vol.4
, pp. 2010-2201
-
-
Olsen, J.V.1
de Godoy, L.M.2
Li, G.3
Macek, B.4
-
62
-
-
18344364097
-
The Orbitrap: a new mass spectrometer
-
Hu, Q., Noll, R. J., Li, H., Makarov, A. et al., The Orbitrap: a new mass spectrometer. J. Mass Spectrom. 2005, 40, 430-443.
-
(2005)
J. Mass Spectrom.
, vol.40
, pp. 430-443
-
-
Hu, Q.1
Noll, R.J.2
Li, H.3
Makarov, A.4
-
63
-
-
75149144996
-
A dual pressure linear ion trap Orbitrap instrument with very high sequencing speed
-
Olsen, J. V., Schwartz, J. C., Griep-Raming, J., Nielsen, M. L. et al., A dual pressure linear ion trap Orbitrap instrument with very high sequencing speed. Mol. Cell. Proteomics 2009, 8, 2759-2769.
-
(2009)
Mol. Cell. Proteomics
, vol.8
, pp. 2759-2769
-
-
Olsen, J.V.1
Schwartz, J.C.2
Griep-Raming, J.3
Nielsen, M.L.4
-
64
-
-
0036636552
-
A novel precursor ion discovery method on a hybrid quadrupole orthogonal acceleration time-of-flight (Q-TOF) mass spectrometer for studying protein phosphorylation
-
Bateman, R. H., Carruthers, R., Hoyes, J. B., Jones, C. et al., A novel precursor ion discovery method on a hybrid quadrupole orthogonal acceleration time-of-flight (Q-TOF) mass spectrometer for studying protein phosphorylation. J. Am. Soc. Mass. Spectrom. 2002, 13, 792-803.
-
(2002)
J. Am. Soc. Mass. Spectrom.
, vol.13
, pp. 792-803
-
-
Bateman, R.H.1
Carruthers, R.2
Hoyes, J.B.3
Jones, C.4
-
65
-
-
31644446949
-
Absolute quantification of proteins by LCMSE: a virtue of parallel MS acquisition
-
Silva, J. C., Gorenstein, M. V., Li, G. Z., Vissers, J. P. et al., Absolute quantification of proteins by LCMSE: a virtue of parallel MS acquisition. Mol. Cell. Proteomics 2006, 5, 144-156.
-
(2006)
Mol. Cell. Proteomics
, vol.5
, pp. 144-156
-
-
Silva, J.C.1
Gorenstein, M.V.2
Li, G.Z.3
Vissers, J.P.4
-
66
-
-
68049114653
-
Precursor acquisition independent from ion count: how to dive deeper into the proteomics ocean
-
Panchaud, A., Scherl, A., Shaffer, S. A., von Haller, P. D. et al., Precursor acquisition independent from ion count: how to dive deeper into the proteomics ocean. Anal. Chem. 2009, 81, 6481-6488.
-
(2009)
Anal. Chem.
, vol.81
, pp. 6481-6488
-
-
Panchaud, A.1
Scherl, A.2
Shaffer, S.A.3
von Haller, P.D.4
-
67
-
-
79954569537
-
Faster, quantitative, and accurate precursor acquisition independent from ion count
-
Panchaud, A., Jung, S., Shaffer, S. A., Aitchison, J. D. et al., Faster, quantitative, and accurate precursor acquisition independent from ion count. Anal. Chem. 2011, 83, 2250-2257.
-
(2011)
Anal. Chem.
, vol.83
, pp. 2250-2257
-
-
Panchaud, A.1
Jung, S.2
Shaffer, S.A.3
Aitchison, J.D.4
-
68
-
-
84861860481
-
Targeted data extraction of the MS/MS spectra generated by data-independent acquisition: a new concept for consistent and accurate proteome analysis
-
Gillet, L. C., Navarro, P., Tate, S., Röst, H. et al., Targeted data extraction of the MS/MS spectra generated by data-independent acquisition: a new concept for consistent and accurate proteome analysis. Mol. Cell. Proteomics 2012, 11, O111.016717.
-
(2012)
Mol. Cell. Proteomics
, vol.11
-
-
Gillet, L.C.1
Navarro, P.2
Tate, S.3
Röst, H.4
-
69
-
-
84861897793
-
Mass spectrometry-based proteomics and network biology
-
Bensimon, A., Heck, A. J., Aebersold, R., Mass spectrometry-based proteomics and network biology. Annu. Rev. Biochem. 2012, 81, 379-405.
-
(2012)
Annu. Rev. Biochem.
, vol.81
, pp. 379-405
-
-
Bensimon, A.1
Heck, A.J.2
Aebersold, R.3
-
70
-
-
0033434080
-
Probability-based protein identification by searching sequence databases using mass spectrometry data
-
Perkins, D. N., Pappin, D. J., Creasy, D. M., Cottrell, J. S., Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis 1999, 20, 3551-3567.
-
(1999)
Electrophoresis
, vol.20
, pp. 3551-3567
-
-
Perkins, D.N.1
Pappin, D.J.2
Creasy, D.M.3
Cottrell, J.S.4
-
71
-
-
0000857494
-
An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database
-
Eng, J. K., McCormack, A. L., Yates, III J. R., An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database. J. Am. Soc. Mass Spectrom. 1994, 5, 976-989.
-
(1994)
J. Am. Soc. Mass Spectrom.
, vol.5
, pp. 976-989
-
-
Eng, J.K.1
McCormack, A.L.2
Yates III, J.R.3
-
72
-
-
3142702204
-
TANDEM: matching proteins with tandem mass spectra
-
Craig, R., Beavis, R. C., TANDEM: matching proteins with tandem mass spectra. Bioinformatics 2004, 20, 1466-1467.
-
(2004)
Bioinformatics
, vol.20
, pp. 1466-1467
-
-
Craig, R.1
Beavis, R.C.2
-
73
-
-
33847401893
-
MyriMatch: highly accurate tandem mass spectral peptide identification by multivariate hypergeometric analysis
-
Tabb, D. L., Fernando, C. G., Chambers, M. C., MyriMatch: highly accurate tandem mass spectral peptide identification by multivariate hypergeometric analysis. Proteome Res. 2007, 6, 654-661.
-
(2007)
Proteome Res.
, vol.6
, pp. 654-661
-
-
Tabb, D.L.1
Fernando, C.G.2
Chambers, M.C.3
-
74
-
-
35848929694
-
Analysis and validation of proteomic data generated by tandem mass spectrometry
-
Nesvizhskii, A. I., Vitek, O., Aebersold, R., Analysis and validation of proteomic data generated by tandem mass spectrometry. Nat. Methods 2007, 4, 787-797.
-
(2007)
Nat. Methods
, vol.4
, pp. 787-797
-
-
Nesvizhskii, A.I.1
Vitek, O.2
Aebersold, R.3
-
75
-
-
79551500036
-
Less label, more free: approaches in label-free quantitative mass spectrometry
-
Neilson, K. A., Ali, N. A., Muralidharan, S., Mirzaei, M. et al., Less label, more free: approaches in label-free quantitative mass spectrometry. Proteomics 2011, 11, 535-553.
-
(2011)
Proteomics
, vol.11
, pp. 535-553
-
-
Neilson, K.A.1
Ali, N.A.2
Muralidharan, S.3
Mirzaei, M.4
-
76
-
-
78751633947
-
Proteomics in the microbial sciences
-
Graham, C., McMullan, G., Graham, R. L., Proteomics in the microbial sciences. Bioeng. Bugs 2011, 2, 17-30.
-
(2011)
Bioeng. Bugs
, vol.2
, pp. 17-30
-
-
Graham, C.1
McMullan, G.2
Graham, R.L.3
-
77
-
-
34748916981
-
Quantitative mass spectrometry in proteomics: a critical review
-
Bantscheff, M., Schirle, M., Sweetman, G., Rick, J. et al., Quantitative mass spectrometry in proteomics: a critical review. Anal. Bioanal. Chem. 2007, 389, 1017-1031.
-
(2007)
Anal. Bioanal. Chem.
, vol.389
, pp. 1017-1031
-
-
Bantscheff, M.1
Schirle, M.2
Sweetman, G.3
Rick, J.4
-
78
-
-
33746285299
-
Label-free quantitative proteomics using large peptide data sets generated by nanoflow liquid chromatography and mass spectrometry
-
Ono, M., Shitashige, M., Honda, K., Isobe, T. et al., Label-free quantitative proteomics using large peptide data sets generated by nanoflow liquid chromatography and mass spectrometry. Mol. Cell. Proteomics 2006, 5, 1338-1347.
-
(2006)
Mol. Cell. Proteomics
, vol.5
, pp. 1338-1347
-
-
Ono, M.1
Shitashige, M.2
Honda, K.3
Isobe, T.4
-
79
-
-
58149299336
-
Significance analysis of spectral count data in label-free shotgun proteomics
-
Choi, H., Fermin, D., Nesvizhskii, A. I., Significance analysis of spectral count data in label-free shotgun proteomics. Mol. Cell. Proteomics 2008, 7, 2373-2385.
-
(2008)
Mol. Cell. Proteomics
, vol.7
, pp. 2373-2385
-
-
Choi, H.1
Fermin, D.2
Nesvizhskii, A.I.3
-
80
-
-
27644555055
-
Interpretation of shotgun proteomic data: the protein inference problem
-
Nesvizhskii, A. I., Aebersold, R., Interpretation of shotgun proteomic data: the protein inference problem. Mol. Cell. Proteomics 2005, 4, 1419-1440.
-
(2005)
Mol. Cell. Proteomics
, vol.4
, pp. 1419-1440
-
-
Nesvizhskii, A.I.1
Aebersold, R.2
-
81
-
-
36349024645
-
Current trends in computational inference from mass spectrometry-based proteomics
-
Webb-Robertson, B. J., Cannon, W. R., Current trends in computational inference from mass spectrometry-based proteomics. Brief. Bioinform. 2007, 8, 304-17.
-
(2007)
Brief. Bioinform
, vol.8
, pp. 304-317
-
-
Webb-Robertson, B.J.1
Cannon, W.R.2
-
82
-
-
84865783204
-
Protein inference: a review
-
Huang, T., Wang, J., Yu, W., He, Z., Protein inference: a review. Brief. Bioinform. 2012, 13, 586-614.
-
(2012)
Brief. Bioinform.
, vol.13
, pp. 586-614
-
-
Huang, T.1
Wang, J.2
Yu, W.3
He, Z.4
-
83
-
-
28044431588
-
Protein variety and functional diversity: Swiss-Prot annotation in its biological context
-
Boeckmann, B., Blatter, M. C., Famiglietti, L., Hinz, U. et al., Protein variety and functional diversity: Swiss-Prot annotation in its biological context. C. R. Biol. 2005, 328, 882-899.
-
(2005)
C. R. Biol.
, vol.328
, pp. 882-899
-
-
Boeckmann, B.1
Blatter, M.C.2
Famiglietti, L.3
Hinz, U.4
-
84
-
-
84859436530
-
NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy
-
Pruitt, K. D., Tatusova, T., Brown, G. R., Maglott, D. R., NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy. Nucleic Acids Res. 2012, 40, D130-D135.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Pruitt, K.D.1
Tatusova, T.2
Brown, G.R.3
Maglott, D.R.4
-
85
-
-
62549146620
-
Protein function prediction-the power of multiplicity
-
Rentzsch, R., Orengo, C. A., Protein function prediction-the power of multiplicity. Trends Biotechnol. 2009, 27, 210-219.
-
(2009)
Trends Biotechnol
, vol.27
, pp. 210-219
-
-
Rentzsch, R.1
Orengo, C.A.2
-
86
-
-
34648834050
-
The state of the art in the analysis of two-dimensional gel electrophoresis images
-
Berth, M., Moser, F. M., Kolbe, M., Bernhardt, J., The state of the art in the analysis of two-dimensional gel electrophoresis images. Appl. Microbiol. Biotechnol. 2007, 76, 1223-43.
-
(2007)
Appl. Microbiol. Biotechnol.
, vol.76
, pp. 1223-1243
-
-
Berth, M.1
Moser, F.M.2
Kolbe, M.3
Bernhardt, J.4
-
87
-
-
33744734675
-
Visual analysis of gel-free proteome data
-
Linsen, L., Löcherbach, J., Berth, M., Becher, D. et al., Visual analysis of gel-free proteome data. IEEE Trans. Vis. Comput. Graph. 2006, 12, 497-508.
-
(2006)
IEEE Trans. Vis. Comput. Graph.
, vol.12
, pp. 497-508
-
-
Linsen, L.1
Löcherbach, J.2
Berth, M.3
Becher, D.4
-
88
-
-
17444417122
-
Generalized Venn diagrams: a new method of visualizing complex genetic set relations
-
Kestler, H. A., Müller, A., Gress, T. M., Buchholz, M., Generalized Venn diagrams: a new method of visualizing complex genetic set relations. Bioinformatics 2005, 21, 1592-1595.
-
(2005)
Bioinformatics
, vol.21
, pp. 1592-1595
-
-
Kestler, H.A.1
Müller, A.2
Gress, T.M.3
Buchholz, M.4
-
90
-
-
0032376126
-
Violin plots: a box plot-density trace synergism
-
Jerry, L., Hintze, R. D. N., Violin plots: a box plot-density trace synergism. Am. Stat. 1998, 52, 181-184.
-
(1998)
Am. Stat.
, vol.52
, pp. 181-184
-
-
Jerry, L.1
Hintze, R.D.N.2
-
91
-
-
77955756099
-
Visualizing summary statistics and uncertainty
-
Potter, K., Kniss, J., Riesenfeld, R., Johhson, C., Visualizing summary statistics and uncertainty. Comput. Graph Forum 2010, 29, 823-832.
-
(2010)
Comput. Graph Forum
, vol.29
, pp. 823-832
-
-
Potter, K.1
Kniss, J.2
Riesenfeld, R.3
Johhson, C.4
-
92
-
-
0035193714
-
Ordered treemap layouts
-
Shneiderman, B., Wattenberg, M., Ordered treemap layouts. In Proceedings of IEEE Symposium on Information Visualization 2001, 2001, 73-78.
-
(2001)
In Proceedings of IEEE Symposium on Information Visualization
, vol.2001
, pp. 73-78
-
-
Shneiderman, B.1
Wattenberg, M.2
-
93
-
-
33749375704
-
Voronoi treemaps
-
Balzer, M., Deussen, O., Voronoi treemaps. In Proceedings of IEEE Symposium on Information Visualization, 2005, 2005, 49-56.
-
(2005)
In Proceedings of IEEE Symposium on Information Visualization
, vol.2005
, pp. 49-56
-
-
Balzer, M.1
Deussen, O.2
-
94
-
-
77951479405
-
-
Visualizing gene expression data via Voronoi treemaps. 6th International Symposium on Voronoi Diagrams in Science and Engineering, 2009 (ISVD'09). Copenhagen, Denmark: Computer Society Digital Library (CSDL);
-
Bernhardt, J., Funke, S., Hecker, M., Siebourg, J., Visualizing gene expression data via Voronoi treemaps. 6th International Symposium on Voronoi Diagrams in Science and Engineering, 2009 (ISVD'09). Copenhagen, Denmark: Computer Society Digital Library (CSDL); 2009, 233-241.
-
(2009)
, pp. 233-241
-
-
Bernhardt, J.1
Funke, S.2
Hecker, M.3
Siebourg, J.4
-
96
-
-
0031915896
-
Large-scale temporal gene expression mapping of central nervous system development
-
Wen, X., Fuhrman, S., Michaels, G. S., Carr, D. B. et al., Large-scale temporal gene expression mapping of central nervous system development. Proc. Natl Acad. Sci. U.S.A. 1998, 95, 334-339.
-
(1998)
Proc. Natl Acad. Sci. U.S.A.
, vol.95
, pp. 334-339
-
-
Wen, X.1
Fuhrman, S.2
Michaels, G.S.3
Carr, D.B.4
-
97
-
-
0032441150
-
Cluster analysis and display of genome-wide expression patterns
-
Eisen, M. B., Spellman, P. T., Brown, P. O., Botstein, D., Cluster analysis and display of genome-wide expression patterns. Proc. Natl. Acad. Sci. U.S.A. 1998, 95, 14863-14868.
-
(1998)
Proc. Natl. Acad. Sci. U.S.A.
, vol.95
, pp. 14863-14868
-
-
Eisen, M.B.1
Spellman, P.T.2
Brown, P.O.3
Botstein, D.4
-
98
-
-
54949127497
-
Stacked graphs-geometry & aesthetics
-
Byron, L., Wattenberg, M., Stacked graphs-geometry & aesthetics. IEEE Trans. Vis. Comput. Graph. 2008, 14, 1245-1252
-
(2008)
IEEE Trans. Vis. Comput. Graph.
, vol.14
, pp. 1245-1252
-
-
Byron, L.1
Wattenberg, M.2
-
99
-
-
0004033414
-
-
Springer, New York, NY
-
Chapin, F. S., Matson, P. A., Mooney, H. A., Principles of Terrestrial Ecosystem Ecology. Springer, New York, NY, 2002.
-
(2002)
Principles of Terrestrial Ecosystem Ecology
-
-
Chapin, F.S.1
Matson, P.A.2
Mooney, H.A.3
-
100
-
-
65549098928
-
Rates of litter decomposition in terrestrial ecosystems: global patterns and controlling factors
-
Zhang, D., Hui, D., Luo, Y., Zhou, G., Rates of litter decomposition in terrestrial ecosystems: global patterns and controlling factors. J. Plant Ecol. 2008, 1, 85-93.
-
(2008)
J. Plant Ecol.
, vol.1
, pp. 85-93
-
-
Zhang, D.1
Hui, D.2
Luo, Y.3
Zhou, G.4
-
101
-
-
78649991965
-
Litter decomposition: what controls it and how can we alter it to sequester more carbon in forest soils?
-
Prescott, C. E., Litter decomposition: what controls it and how can we alter it to sequester more carbon in forest soils? Biogeochemistry 2010, 101, 133-149.
-
(2010)
Biogeochemistry
, vol.101
, pp. 133-149
-
-
Prescott, C.E.1
-
102
-
-
84855937877
-
Active and total microbial communities in forest soil are largely different and highly stratified during decomposition
-
Baldrian, P., Kolarik, M., Stursova, M., Kopecky, J. et al., Active and total microbial communities in forest soil are largely different and highly stratified during decomposition. ISME J. 2012, 6, 248-258.
-
(2012)
ISME J.
, vol.6
, pp. 248-258
-
-
Baldrian, P.1
Kolarik, M.2
Stursova, M.3
Kopecky, J.4
-
103
-
-
0038340891
-
The implications of exoenzyme activity on microbial carbon and nitrogen limitation in soil: a theoretical model
-
Schimel, J. P., Weintraub, M. N., The implications of exoenzyme activity on microbial carbon and nitrogen limitation in soil: a theoretical model. Soil Biol. Biochem. 2003, 35, 549-563.
-
(2003)
Soil Biol. Biochem.
, vol.35
, pp. 549-563
-
-
Schimel, J.P.1
Weintraub, M.N.2
-
104
-
-
70449704159
-
Rhizosphere chemical dialogues: plant-microbe interactions
-
Badri, D. V., Weir, T. L., van der Lelie, D., Vivanco, J. M., Rhizosphere chemical dialogues: plant-microbe interactions. Curr. Opin. Biotechnol. 2009, 20, 642-650.
-
(2009)
Curr. Opin. Biotechnol.
, vol.20
, pp. 642-650
-
-
Badri, D.V.1
Weir, T.L.2
van der Lelie, D.3
Vivanco, J.M.4
-
105
-
-
70349551727
-
Plant-growth-promoting rhizobacteria
-
Lugtenberg, B., Kamilova, F., Plant-growth-promoting rhizobacteria. Annu. Rev. Microbiol. 2009, 63, 541-56.
-
(2009)
Annu. Rev. Microbiol.
, vol.63
, pp. 541-556
-
-
Lugtenberg, B.1
Kamilova, F.2
-
106
-
-
63349086688
-
Comparative proteomic studies of root-microbe interactions
-
Mathesius, U., Comparative proteomic studies of root-microbe interactions. J. Proteomics 2009, 72, 353-366.
-
(2009)
J. Proteomics
, vol.72
, pp. 353-366
-
-
Mathesius, U.1
-
107
-
-
79951852806
-
Untapped potential: exploiting fungi in bioremediation of hazardous chemicals
-
Harms, H., Schlosser, D., Wick, L. Y., Untapped potential: exploiting fungi in bioremediation of hazardous chemicals. Nat. Rev. Microbiol. 2011, 9, 177-92.
-
(2011)
Nat. Rev. Microbiol.
, vol.9
, pp. 177-192
-
-
Harms, H.1
Schlosser, D.2
Wick, L.Y.3
-
108
-
-
81155150237
-
Laboratory research aimed at closing the gaps in microbial bioremediation
-
Ramos, J. L., Marqués, S., van Dillewijn, P., Espinosa-Urgel, M. et al., Laboratory research aimed at closing the gaps in microbial bioremediation. Trends Biotechnol. 2011, 29, 641-647.
-
(2011)
Trends Biotechnol
, vol.29
, pp. 641-647
-
-
Ramos, J.L.1
Marqués, S.2
van Dillewijn, P.3
Espinosa-Urgel, M.4
-
109
-
-
70349655393
-
Degradation of alkanes by bacteria
-
Rojo, F., Degradation of alkanes by bacteria. Environ. Microbiol. 2009, 11, 2477-2490.
-
(2009)
Environ. Microbiol.
, vol.11
, pp. 2477-2490
-
-
Rojo, F.1
-
110
-
-
77953211761
-
Archaeal transformation of metals in the environment
-
Bini, E., Archaeal transformation of metals in the environment. FEMS Microbiol. Ecol. 2010, 1, 1-16.
-
(2010)
FEMS Microbiol. Ecol.
, vol.1
, pp. 1-16
-
-
Bini, E.1
-
111
-
-
0037403657
-
The potential of soil protein-based methods to indicate metal contamination
-
Singleton, I., Merrington, G., Colvan, S., Delahunty, J. S., The potential of soil protein-based methods to indicate metal contamination. Appl. Soil Ecol. 2003, 23, 25-32.
-
(2003)
Appl. Soil Ecol.
, vol.23
, pp. 25-32
-
-
Singleton, I.1
Merrington, G.2
Colvan, S.3
Delahunty, J.S.4
-
112
-
-
77954080342
-
Tracing changes in the microbial community of a hydrocarbon-polluted soil by culture-dependent
-
Bastida, F., Nicolas, C., Moreno, J. L., Hernandez, T. et al., Tracing changes in the microbial community of a hydrocarbon-polluted soil by culture-dependent. Pedosphere 2010, 20, 479-485.
-
(2010)
Pedosphere
, vol.20
, pp. 479-485
-
-
Bastida, F.1
Nicolas, C.2
Moreno, J.L.3
Hernandez, T.4
-
113
-
-
77954864521
-
Metaproteomic characterization of a soil microbial community following carbon amendment
-
Williams, M. A., Taylor, E. B., Mula, H. P., Metaproteomic characterization of a soil microbial community following carbon amendment. Soil Biol. Biochem. 2010, 42, 1148-1156.
-
(2010)
Soil Biol. Biochem.
, vol.42
, pp. 1148-1156
-
-
Williams, M.A.1
Taylor, E.B.2
Mula, H.P.3
-
114
-
-
70349481520
-
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria
-
Delmotte, N., Knief, C., Chaffron, S., Innerebner, G. et al., Community proteogenomics reveals insights into the physiology of phyllosphere bacteria. Proc. Natl. Acad. Sci. U.S.A. 2009, 106, 16428-16433.
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 16428-16433
-
-
Delmotte, N.1
Knief, C.2
Chaffron, S.3
Innerebner, G.4
-
115
-
-
63049092891
-
TerraGenome: a consortium for the sequencing of a soil metagenome
-
Vogel, T. M., Simonet, P., Jansson, J. K., Hirsch, P. R. et al., TerraGenome: a consortium for the sequencing of a soil metagenome. Nat. Rev. Microbiol. 2009, 7, 252.
-
(2009)
Nat. Rev. Microbiol.
, vol.7
, pp. 252
-
-
Vogel, T.M.1
Simonet, P.2
Jansson, J.K.3
Hirsch, P.R.4
-
116
-
-
84871297843
-
Next-generation proteomics: towards an integrative view of proteome dynamics
-
Altelaar, A. F., Munoz, J., Heck, A. J., Next-generation proteomics: towards an integrative view of proteome dynamics. Nat. Rev. Genet. 2013, 14, 35-48.
-
(2013)
Nat. Rev. Genet.
, vol.14
, pp. 35-48
-
-
Altelaar, A.F.1
Munoz, J.2
Heck, A.J.3
-
117
-
-
84867574489
-
Protein-based stable isotope probing (protein-SIP) in functional metaproteomics
-
Seifert, J., Taubert, M., Jehmlich, N., Schmidt, F. et al., Protein-based stable isotope probing (protein-SIP) in functional metaproteomics. Mass Spectrom. Rev. 2012, 31, 683-697.
-
(2012)
Mass Spectrom. Rev.
, vol.31
, pp. 683-697
-
-
Seifert, J.1
Taubert, M.2
Jehmlich, N.3
Schmidt, F.4
-
118
-
-
84871756005
-
Soil enzymes in a changing environment: Current knowledge and future directions
-
Burns, R. G., DeForest, J. L., Marxsen, J., Sinsabaugh, R. L. et al., Soil enzymes in a changing environment: Current knowledge and future directions. Soil Biol. Biochem. 2013, 58, 216-234.
-
(2013)
Soil Biol. Biochem.
, vol.58
, pp. 216-234
-
-
Burns, R.G.1
DeForest, J.L.2
Marxsen, J.3
Sinsabaugh, R.L.4
|