A proteomic fingerprint of dissolved organic carbon and of soil particles

Oecologia

Volumn 142, Issue 3, 2005, Pages 335-343

  Schulze, Waltraud X ^a   Gleixner, Gerd ^b   Kaiser, Klaus ^c   Guggenberger, Georg ^c   Mann, Matthias ^a   Schulze, Ernst Detlef ^b  

^a UNIVERSITY OF SOUTHERN DENMARK   (Denmark)

^b MAX PLANCK INSTITUTE FOR BIOGEOCHEMISTRY   (Germany)

^c MARTIN LUTHER UNIVERSITY HALLE WITTENBERG   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

CARBON; VEGETABLE PROTEIN;

DISSOLVED ORGANIC CARBON; FOREST SOIL; MASS SPECTROMETRY; PROTEIN; SOIL ORGANIC MATTER;

ARTICLE; DNA FINGERPRINTING; ENVIRONMENTAL MONITORING; EVALUATION; METHODOLOGY; PROTEOMICS; SOIL;

CARBON; DNA FINGERPRINTING; ENVIRONMENTAL MONITORING; PLANT PROTEINS; PROTEOMICS; SOIL;

BACTERIA (MICROORGANISMS); PICEA;

EID: 12944295105     PISSN: 00298549     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00442-004-1698-9     Document Type: Article

References (37)

1. Aebersold R, Mann M (2003) Mass spectrometry-based proteomics. Nature 422:198-207
2. 15N CPMAS NMR-spectra of soil organic matter and composts. FEBS Lett 282:119-121
3. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403-410
4. Arnold RJ, Reilly JP (1998) Fingerprint matching of E. coli strains with matrix-assisted laser desorption/ionization time-of-flight mass spectrometry of whole cells using a modified correlation approach. Rapid Commun Mass Spectrom 12:630-636
5. Báldi A (2003) Using higher taxa as surrogates of species richness: a study based on 3700 Coleoptera, Diptera and Acri in Central-Hungarian reserves. Basic Appl Ecol 4:589-593
6. Battin TJ, Kaplan LA, Newbold JD, Hansen CME (2003) Contributions of microbial biofilms to ecosystem processes in stream mesocosms. Nature 426:439-440
7. Christensen BT (1992) Physical fractionation of soil and organic matter in primary particle size and density separates. Adv Soil Sci 20:1-90
8. Dickinson DN, La Duc MT, Haskins WE, Gornushkin I, Winefordner JD, Powell DH, Venkateswaran K (2004a) Species differentiation of a diverse suite of bacillus spores by mass spectrometry-based protein profiling. Appl Environ Microbiol 70:472-482
9. Dickinson DN, La Due MT, Satomi M, Wienfordner JD, Powell DH, Venkateswaran K (2004b) MALDI-TOFMS compared with other polyphasic taxonomy approaches for the identification and classification of Bacillus pumilus spores. J Microbiol Methods 58:1-12
10. Gleixner G, Czimczik C, Kramer C, Lühker B, Schmidt MWI (2001) Plant compounds and their turnover and stability as soil organic matter. In: Schulze ED et al (eds) Global biogeochemical cycles in the climate system. Academic, San Diego, pp 201-216
11. Graham IA, Baker CJ, Leaver CJ (1994) Carbon catabolite repression regulates glyoxylate cycle gene expression in cucumber. Plant Cell 6:761-772
12. Guggenberger G, Kaiser K (2003) Dissolved organic matter in soil: challenging the paradigm of sorptive preservation. Geoderma 113:293-310
13. Habermann B, Oegerma J, Sunyaev S, Shevchenko A (2004) The power and the limitations of cross-species protein identification by mass spectrometry-driven sequence similarity searches. Mol Cell Proteomics 3:238-249
14. 14C ages of soil respiration. Max-Planck Institute of Biogeochemistry, Jena
15. Harris SA, Robinson JP, Juniper BE (2002) Genetic clues to the origin of the apple. Trends Gene 18:426-430
16. Heywood VH, Watson RT (1995) Global biodiversity assessment. Cambridge University Press, London
17. Ishihama Y, Rappsilber J, Andersen JS, Mann M (2002) Micro-columns with self-assembled particle frits for proteomics. J Chromatogr A 979:233-239
18. Kaiser K, Guggenberger G, Haumaer L, Zech W (2001) Seasonal variations in the chemical composition of dissolved organic matter in organic forest floor layer leachates of old-growth Scots pine (Pinus sylvestris L.) and European beech (Fags sylvatica L.) stands in northeastern Bavaria, Germany. Biogeochemistry 55:103-143
19. Kjöller A, Miller M, Struwe S, Wolters V, Pflug A (2000) Diversity and role of microorganisms. In: Schulze ED (ed) Carbon and nitrogen cycling in European forest ecosystems, vol 142. Springer, Berlin Heidelberg New York, pp 382-404
20. Knohl A, Schulze ED, Kolle O, Buchmann N (2003) Large carbon uptake by an unmanaged 250-year-old deciduous forest in central Germany. Agr Forest Meteorol 118:151-167
21. Kracht O, Gleixner G (2000) Isotope analysis of pyrolysis products from Sphagnum peat and dissolved organic matter from bog water. Org Geochem 31:645-654
22. Lipson DA, Schadt CW, Schmidt SK (2002) Changes in soil microbial community structure and function in an alpine dry meadow following spring snow melt. Microb Ecol 43:307-314
23. Loreau M, Hector A, Inchausti P (2002) Biodiversity and ecosystem functioning. Oxford University Press, Oxford
24. Luis P, Walther G, Kellner H, Martin F, Buscot F (2004) Diversity of laccase genes from basidiomycetes in a forest soil. Soil Biol Biochem (in press)
25. Michalzik B, Matzner E (1999) Dynamics of dissolved organic nitrogen and carbon in a Central European Norway spruce ecosystem. Eur J Soil Sci 50:579-590
26. Perkins DN, Pappin DJC, Creasy DM, Cottrell JS (1999) Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis 20:3551-3567
27. Purvis A, Hector A (2000) Getting the measure of biodiversity. Nature 405:212-219
28. Rappsilber J, Mann M (2002) What does it mean to identify a protein in proteomics. Trends Biochem Sci 27:74-78
29. Rappsilber J, Ryder U, Lamon AI, Mann M (2002) Large-scale proteomic analysis of the human spliceosome. Genome Res 12:1231-1245
30. Rappsilber J, Ishihama Y, Mann M (2003) Stop and go extraction tips for matrix-assisted laser desorption/ionization, nanoelectrospray, and LC/MS sample pretreatment in proteomics. Anal Chem 75:663-670
31. Schulten HR, Gleixner G (1999) Analytical pyrolysis of humic substances and dissolved organic matter in aquatic systems: structure and origin. Water Res 33:2489-2498
32. Shevchenko A, Wilm M, Vorm O, Mann M (1996) Mass spectrometric sequencing of proteins silver-stained polyacrylamide gels. Anal Chem 68:850-858
33. Stemmer M, Gerzabek MH, Kandeler E (1998) Organic matter and enzyme activity in particle-size fractions of soils obtained after low-energy sonication. Soil Biol Biochem 30:9-17
34. Tyers M, Mann M (2003) From genomics to proteomics. Nature 422:193-197
35. Tyson GW et al. (2004) Community structure and metabolism through reconstruction of microbial genomes from the environment. Nature 428:37-43
36. Venter JC et al. (2004) Environmental genome shotgun sequencing of the Sargasso Sea. Science 304:66-74
37. Zelles L (1997) Phospholipid fatty acid profiles in selected members of soil microbial communities. Chemosphere 35:275-294