Distinct metabolic differences between various human cancer and primary cells

Electrophoresis

Volumn 34, Issue 19, 2013, Pages 2836-2847

  Dettmer, Katja ^a   Vogl, Franziska C ^a   Ritter, Axel P ^a   Zhu, Wentao ^a   Nürnberger, Nadine ^a   Kreutz, Marina ^b   Oefner, Peter J ^a   Gronwald, Wolfram ^a   Gottfried, Eva ^b  

^a UNIVERSITY OF REGENSBURG   (Germany)

^b UNIVERSITY HOSPITAL REGENSBURG   (Germany)

Author keywords

Mass spectrometry; Metabolomics; Primary cells; Tumor cells

Indexed keywords

AMINO ACIDS; CELL CULTURE; CELLS; DISEASES; METABOLISM; TUMORS;

CANCER CELLS; CELL METABOLISM; HEPATOCYTES; HUMAN CANCER CELLS; METABOLOMICS; NON-TARGETED; PRIMARY CELLS; RENAL CELL CARCINOMA; TUMOR-STROMA; TUMOUR CELLS;

MASS SPECTROMETRY;

ARGININE; CD4 ANTIGEN; CD8 ANTIGEN; DIPEPTIDE DERIVATIVE; LACTIC ACID; NICOTINAMIDE; TRIPEPTIDE DERIVATIVE;

ARTICLE; BIOENERGY; BLADDER CARCINOMA; BREAST CANCER; CANCER CELL CULTURE; CARCINOMA CELL; CD4+ T LYMPHOCYTE; CD8+ T LYMPHOCYTE; CELL METABOLISM; CLUSTER ANALYSIS; COLORECTAL CARCINOMA; GLIOBLASTOMA; HUMAN; HUMAN CELL; KIDNEY CARCINOMA; LEUKEMIA CELL; LIQUID CHROMATOGRAPHY; LIVER CELL CARCINOMA; LIVER CELL CULTURE; MASS FRAGMENTOGRAPHY; MELANOCYTE; MELANOMA CELL; METABOLOME; MONOCYTE CULTURE; PEPTIDE SYNTHESIS; PRIMARY CELL CULTURE;

MASS SPECTROMETRY; METABOLOMICS; PRIMARY CELLS; TUMOR CELLS;

CELL LINE, TUMOR; CHROMATOGRAPHY, LIQUID; GAS CHROMATOGRAPHY-MASS SPECTROMETRY; HUMANS; MASS SPECTROMETRY; METABOLOME; METABOLOMICS; NEOPLASMS; TUMOR CELLS, CULTURED;

EID: 84884985878     PISSN: 01730835     EISSN: 15222683     Source Type: Journal    
DOI: 10.1002/elps.201300228     Document Type: Article

References (49)

1. Warburg, O., Science 1956, 123, 309-314.
2. Levine, A. J., Puzio-Kuter, A. M., Science 2010, 330, 1340-1344.
3. Jones, R. G., Thompson, C. B., Genes Dev. 2009, 23, 537-548.
4. Gottfried, E., Kreutz, M., Mackensen, A., Semin. Cancer Biol. 2012, 22, 335-341.
5. Gottfried, E., Kunz-Schughart, L. A., Ebner, S., Mueller-Klieser, W., Hoves, S., Andreesen, R., Mackensen, A., Kreutz, M., Blood 2006, 107, 2013-2021.
6. Dietl, K., Renner, K., Dettmer, K., Timischl, B., Eberhart, K., Dorn, C., Hellerbrand, C., Kastenberger, M., Kunz-Schughart, L. A., Oefner, P. J., Andreesen, R., Gottfried, E., Kreutz, M. P., J. Immunol. 2010, 184, 1200-1209.
7. Fischer, K., Hoffmann, P., Voelkl, S., Meidenbauer, N., Ammer, J., Edinger, M., Gottfried, E., Schwarz, S., Rothe, G., Hoves, S., Renner, K., Timischl, B., Mackensen, A., Kunz-Schughart, L., Andreesen, R., Krause, S. W., Kreutz, M., Blood 2007, 109, 3812-3819.
8. Fallarino, F., Grohmann, U., Vacca, C., Bianchi, R., Orabona, C., Spreca, A., Fioretti, M. C., Puccetti, P., Cell Death Differ. 2002, 9, 1069-1077.
9. Munder, M., Br. J. Pharmacol. 2009, 158, 638-651.
10. Talmadge, J. E., Clin. Cancer Res. 2007, 13, 5243-5248.
11. Stevens, A. P., Dettmer, K., Wallner, S., Bosserhoff, A. K., Oefner, P. J., J. Chromatogr. B Analyt. Technol. Biomed. Life Sci. 2008, 876, 123-128.
12. Stevens, A. P., Spangler, B., Wallner, S., Kreutz, M., Dettmer, K., Oefner, P. J., Bosserhoff, A. K., J. Cell. Biochem. 2009, 106, 210-219.
13. Stevens, A. P., Dettmer, K., Kirovski, G., Samejima, K., Hellerbrand, C., Bosserhoff, A. K., Oefner, P. J., J. Chromatogr. A 2010, 1217, 3282-3288.
14. Cuperlovic-Culf, M., Barnett, D. A., Culf, A. S., Chute, I., Drug Discov. Today 2010, 15, 610-621.
15. Dettmer, K., Nurnberger, N., Kaspar, H., Gruber, M. A., Almstetter, M. F., Oefner, P. J., Anal. Bioanal. Chem. 2011, 399, 1127-1139.
16. Dettmer, K., Stevens, A. P., Fagerer, S. R., Kaspar, H., Oefner, P. J., Methods Mol. Biol. 2012, 828, 165-181.
17. Zhu, W., Stevens, A. P., Dettmer, K., Gottfried, E., Hoves, S., Kreutz, M., Holler, E., Canelas, A. B., Kema, I., Oefner, P. J., Anal. Bioanal. Chem. 2011, 401, 3249-3261.
18. R Core Team. R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria 2012. http://www.R-project.org/.
19. Bolstad, B. M., Irizarry, R. A., Astrand, M., Speed, T. P., Bioinformatics 2003, 19, 185-193.
20. Huber, W., von Heydebreck, A., Sultmann, H., Poustka, A., Vingron, M., Bioinformatics 2002, 18, S96-S104.
21. Frey, B. J., Dueck, D., Science 2007, 315, 972-976.
22. Smyth, G. K., Stat. Appl. Genet. Mol. Biol. 2004, 3, Article3.
23. Benjamini, Y., Drai, D., Elmer, G., Kafkafi, N., Golani, I., Behav. Brain Res. 2001, 125, 279-284.
24. Bodenhofer, U., Kothmeier, A., Hochreiter, S., Bioinformatics 2011, 27, 2463-2464.
25. Holliday, D. L., Speirs, V., Breast Cancer Res. 2011, 13, 215.
26. Wishart, D. S., Knox, C., Guo, A. C., Eisner, R., Young, N., Gautam, B., Hau, D. D., Psychogios, N., Dong, E., Bouatra, S., Mandal, R., Sinelnikov, I., Xia, J., Jia, L., Cruz, J. A., Lim, E., Sobsey, C. A., Shrivastava, S., Huang, P., Liu, P., Fang, L., Peng, J., Fradette, R., Cheng, D., Tzur, D., Clements, M., Lewis, A., De Souza, A., Zuniga, A., Dawe, M., Xiong, Y., Clive, D., Greiner, R., Nazyrova, A., Shaykhutdinov, R., Li, L., Vogel, H. J., Forsythe, I., Nucleic Acids Res. 2009, 37, D603-D610.
27. Smith, C. A., O'Maille, G., Want, E. J., Qin, C., Trauger, S. A., Brandon, T. R., Custodio, D. E., Abagyan, R., Siuzdak, G., Ther. Drug Monit. 2005, 27, 747-751.
28. Hastings, J., de Matos, P., Dekker, A., Ennis, M., Harsha, B., Kale, N., Muthukrishnan, V., Owen, G., Turner, S., Williams, M., Steinbeck, C., Nucleic Acids Res. 41, D456-D463.
29. Kaihara, M., Price, J. M., Takahashi, H., J. Biol. Chem. 1957, 223, 705-708.
30. Yeh, J. K., Brown, R. R., J. Nutr. 1977, 107, 261-271.
31. Lochs, H., Morse, E. L., Adibi, S. A., J. Biol. Chem. 1986, 261, 14976-14981.
32. Mitsuoka, K., Miyoshi, S., Kato, Y., Murakami, Y., Utsumi, R., Kubo, Y., Noda, A., Nakamura, Y., Nishimura, S., Tsuji, A., J. Nucl. Med. 2008, 49, 615-622.
33. Nakanishi, T., Cancer Genomics Proteomics 2007, 4, 241-254.
34. Jain, M., Nilsson, R., Sharma, S., Madhusudhan, N., Kitami, T., Souza, A. L., Kafri, R., Kirschner, M. W., Clish, C. B., Mootha, V. K., Science 2012, 336, 1040-1044.
35. Uyttenhove, C., Pilotte, L., Theate, I., Stroobant, V., Colau, D., Parmentier, N., Boon, T., Van den Eynde, B. J., Nat. Med. 2003, 9, 1269-1274.
36. Weinlich, G., Murr, C., Richardsen, L., Winkler, C., Fuchs, D., Dermatology 2007, 214, 8-14.
37. Alberati-Giani, D., Ricciardi-Castagnoli, P., Kohler, C., Cesura, A. M., Adv. Exp. Med. Biol. 1996, 398, 171-175.
38. Ross, D. T., Scherf, U., Eisen, M. B., Perou, C. M., Rees, C., Spellman, P., Iyer, V., Jeffrey, S. S., Van de Rijn, M., Waltham, M., Pergamenschikov, A., Lee, J. C., Lashkari, D., Shalon, D., Myers, T. G., Weinstein, J. N., Botstein, D., Brown, P. O., Nat. Genet. 2000, 24, 227-235.
39. Dang, C. V., Kim, J. W., Gao, P., Yustein, J., Nat. Rev. Cancer 2008, 8, 51-56.
40. Shim, H., Dolde, C., Lewis, B. C., Wu, C. S., Dang, G., Jungmann, R. A., Dalla-Favera, R., Dang, C. V., Proc. Natl. Acad. Sci. U.S.A. 1997, 94, 6658-6663.
41. Lin, C. Y., Loven, J., Rahl, P. B., Paranal, R. M., Burge, C. B., Bradner, J. E., Lee, T. I., Young, R. A., Cell 2012, 151, 56-67.
42. Chrzanowska, A., Krawczyk, M., Baranczyk-Kuzma, A., Biochem. Biophys. Res. Commun. 2008, 377, 337-340.
43. Inoue, C., Yamamoto, H., Nakamura, T., Ichihara, A., Okamoto, H., J. Biol. Chem. 1989, 264, 4747-4750.
44. Jang, K. Y., Noh, S. J., Lehwald, N., Tao, G. Z., Bellovin, D. I., Park, H. S., Moon, W. S., Felsher, D. W., Sylvester, K. G., PLoS One 2012, 7, e45119.
45. Muscaritoli, M., Conversano, L., Petti, M. C., Torelli, G. F., Cascino, A., Mecarocci, S., Annicchiarico, M. A., Rossi Fanelli, F., Nutrition 1999, 15, 195-199.
46. Locasale, J. W., Grassian, A. R., Melman, T., Lyssiotis, C. A., Mattaini, K. R., Bass, A. J., Heffron, G., Metallo, C. M., Muranen, T., Sharfi, H., Sasaki, A. T., Anastasiou, D., Mullarky, E., Vokes, N. I., Sasaki, M., Beroukhim, R., Stephanopoulos, G., Ligon, A. H., Meyerson, M., Richardson, A. L., Chin, L., Wagner, G., Asara, J. M., Brugge, J. S., Cantley, L. C., Vander Heiden, M. G., Nat. Genet. 43, 869-874.
47. Regan, J. D., Vodopick, N., Takeda, S., Lee, W. H., Faulcon, F. M., Science 1969, 163, 1452-1453.
48. Liu, W., Le, A., Hancock, C., Lane, A. N., Dang, C. V., Fan, T. W., Phang, J. M., Proc. Natl. Acad. Sci. U.S.A. 2012, 109, 8983-8988.
49. Richardson, A. D., Yang, C., Osterman, A., Smith, J. W., Breast Cancer Res. Treat. 2008, 110, 297-307.