-
1
-
-
34548718221
-
Microbial structuring of marine ecosystems
-
Azam, F., and Malfatti, F. (2007) Microbial structuring of marine ecosystems. Nat. Rev. Microbiol. 5, 782-791
-
(2007)
Nat. Rev. Microbiol.
, vol.5
, pp. 782-791
-
-
Azam, F.1
Malfatti, F.2
-
2
-
-
0036547697
-
Structural enzymology of carbohydrate-active enzymes. Implications for the post-genomic era
-
Davies, G. J., and Henrissat, B. (2002) Structural enzymology of carbohydrate-active enzymes. Implications for the post-genomic era. Biochem. Soc. Trans. 30, 291-297
-
(2002)
Biochem. Soc. Trans.
, vol.30
, pp. 291-297
-
-
Davies, G.J.1
Henrissat, B.2
-
3
-
-
79951588928
-
Microbial extracellular enzymes and the marine carbon cycle
-
Arnosti, C. (2011) Microbial extracellular enzymes and the marine carbon cycle. Annu. Rev. Marine Sci. 3, 401-425
-
(2011)
Annu. Rev. Marine Sci.
, vol.3
, pp. 401-425
-
-
Arnosti, C.1
-
4
-
-
38049120268
-
Polysaccharide hydrolysis in aggregates and free enzyme activity in aggregate-free seawater from the northeastern Gulf of Mexico
-
Ziervogel, K., and Arnosti, C. (2008) Polysaccharide hydrolysis in aggregates and free enzyme activity in aggregate-free seawater from the northeastern Gulf of Mexico. Environ. Microbiol. 10, 289-299
-
(2008)
Environ. Microbiol.
, vol.10
, pp. 289-299
-
-
Ziervogel, K.1
Arnosti, C.2
-
5
-
-
0028010368
-
A modified system of nomenclature for red algal galactans
-
Knutsen, S., Myslabodski, D., Larsen, B., and Usov, A. (1994) A modified system of nomenclature for red algal galactans. Bot. Mar. 37, 163-169
-
(1994)
Bot. Mar.
, vol.37
, pp. 163-169
-
-
Knutsen, S.1
Myslabodski, D.2
Larsen, B.3
Usov, A.4
-
6
-
-
0016354804
-
The agarose double helix and its function in agarose gel structure
-
Arnott, S., Fulmer, A., Scott, W. E., Dea, I. C., Moorhouse, R., and Rees, D. A. (1974) The agarose double helix and its function in agarose gel structure. J. Mol. Biol. 90, 269-284
-
(1974)
J. Mol. Biol.
, vol.90
, pp. 269-284
-
-
Arnott, S.1
Fulmer, A.2
Scott, W.E.3
Dea, I.C.4
Moorhouse, R.5
Rees, D.A.6
-
7
-
-
1842554929
-
Parallel substrate binding sites in a β-agarase suggest a novel mode of action on double-helical agarose
-
Allouch, J., Helbert, W., Henrissat, B., and Czjzek, M. (2004) Parallel substrate binding sites in a β-agarase suggest a novel mode of action on double-helical agarose. Structure 12, 623-632
-
(2004)
Structure
, vol.12
, pp. 623-632
-
-
Allouch, J.1
Helbert, W.2
Henrissat, B.3
Czjzek, M.4
-
9
-
-
33646591842
-
Genomic and proteomic analyses of the agarolytic system expressed by Saccharophagus degradans 2-40
-
Ekborg, N. A., Taylor, L. E., Longmire, A. G., Henrissat, B., Weiner, R. M., and Hutcheson, S. W. (2006) Genomic and proteomic analyses of the agarolytic system expressed by Saccharophagus degradans 2-40. Appl. Environ. Microbiol. 72, 3396-3405
-
(2006)
Appl. Environ. Microbiol.
, vol.72
, pp. 3396-3405
-
-
Ekborg, N.A.1
Taylor, L.E.2
Longmire, A.G.3
Henrissat, B.4
Weiner, R.M.5
Hutcheson, S.W.6
-
10
-
-
33745289829
-
Thalassomonas agarivorans sp nov., a marine agarolytic bacterium isolated from shallow coastal water of An-Ping Harbour, Taiwan, and emended description of the genus Thalassomonas
-
Jean, W. D., Shieh, W. Y., and Liu, T. Y. (2006) Thalassomonas agarivorans sp. nov., a marine agarolytic bacterium isolated from shallow coastal water of An-Ping Harbour, Taiwan, and emended description of the genus Thalassomonas. Int. J. Syst. Evol. Microbiol. 56, 1245-1250
-
(2006)
Int. J. Syst. Evol. Microbiol.
, vol.56
, pp. 1245-1250
-
-
Jean, W.D.1
Shieh, W.Y.2
Liu, T.Y.3
-
11
-
-
84865715282
-
Biochemical and structural characterization of the complex agarolytic enzyme system from the marine bacterium Zobellia galactanivorans
-
Hehemann, J. H., Correc, G., Thomas, F., Bernard, T., Barbeyron, T., Jam, M., Helbert, W., Michel, G., and Czjzek, M. (2012) Biochemical and structural characterization of the complex agarolytic enzyme system from the marine bacterium Zobellia galactanivorans. J. Biol. Chem. 287, 30571-30584
-
(2012)
J. Biol. Chem.
, vol.287
, pp. 30571-30584
-
-
Hehemann, J.H.1
Correc, G.2
Thomas, F.3
Bernard, T.4
Barbeyron, T.5
Jam, M.6
Helbert, W.7
Michel, G.8
Czjzek, M.9
-
12
-
-
84871075875
-
Identification of a novel agarolytic β-proteobacterium Microbulbifer maritimus and characterization of its agarase
-
Vijayaraghavan, R., and Rajendran, S. (2012) Identification of a novel agarolytic β-proteobacterium Microbulbifer maritimus and characterization of its agarase. J. Basic Microbiol. 52, 705-712
-
(2012)
J. Basic Microbiol.
, vol.52
, pp. 705-712
-
-
Vijayaraghavan, R.1
Rajendran, S.2
-
13
-
-
58249111564
-
Production and purification of agarase from a marine agarolytic bacterium Agarivorans sp. HZ105
-
Hu, Z., Lin, B. K., Xu, Y., Zhong, M. Q., and Liu, G. M. (2009) Production and purification of agarase from a marine agarolytic bacterium Agarivorans sp. HZ105. J. Appl. Microbiol. 106, 181-190
-
(2009)
J. Appl. Microbiol.
, vol.106
, pp. 181-190
-
-
Hu, Z.1
Lin, B.K.2
Xu, Y.3
Zhong, M.Q.4
Liu, G.M.5
-
14
-
-
67651097880
-
Psychromonas agarivorans sp nov., a novel agarolytic bacterium
-
Hosoya, S., Jang, J. H., Yasumoto-Hirose, M., Matsuda, S., and Kasai, H. (2009) Psychromonas agarivorans sp. nov., a novel agarolytic bacterium. Int. J. Syst. Evol. Microbiol. 59, 1262-1266
-
(2009)
Int. J. Syst. Evol. Microbiol.
, vol.59
, pp. 1262-1266
-
-
Hosoya, S.1
Jang, J.H.2
Yasumoto-Hirose, M.3
Matsuda, S.4
Kasai, H.5
-
15
-
-
33744465245
-
Bioconversion of red seaweed galactans. A focus on bacterial agarases and carrageenases
-
Michel, G., Nyval-Collen, P., Barbeyron, T., Czjzek, M., and Helbert, W. (2006) Bioconversion of red seaweed galactans. A focus on bacterial agarases and carrageenases. Appl. Microbiol. Biotechnol. 71, 23-33
-
(2006)
Appl. Microbiol. Biotechnol.
, vol.71
, pp. 23-33
-
-
Michel, G.1
Nyval-Collen, P.2
Barbeyron, T.3
Czjzek, M.4
Helbert, W.5
-
16
-
-
76149111967
-
Agarase. Review of major sources, categories, purification method, enzyme characteristics and applications
-
Fu, X. T., and Kim, S. M. (2010) Agarase. Review of major sources, categories, purification method, enzyme characteristics and applications. Mar. Drugs 8, 200-218
-
(2010)
Mar. Drugs
, vol.8
, pp. 200-218
-
-
Fu, X.T.1
Kim, S.M.2
-
17
-
-
84859941695
-
Analysis of keystone enzyme in agar hydrolysis provides insight into the degradation (of a polysaccharide from) red seaweeds
-
Hehemann, J. H., Smyth, L., Yadav, A., Vocadlo, D. J., and Boraston, A. B. (2012) Analysis of keystone enzyme in agar hydrolysis provides insight into the degradation (of a polysaccharide from) red seaweeds. J. Biol. Chem. 287, 13985-13995
-
(2012)
J. Biol. Chem.
, vol.287
, pp. 13985-13995
-
-
Hehemann, J.H.1
Smyth, L.2
Yadav, A.3
Vocadlo, D.J.4
Boraston, A.B.5
-
18
-
-
82955227635
-
Cloning, expression, and characterization of a new β-agarase from Vibrio sp strain CN41
-
Liao, L., Xu, X. W., Jiang, X. W., Cao, Y., Yi, N., Huo, Y. Y., Wu, Y. H., Zhu, X. F., Zhang, X. Q., and Wu, M. (2011) Cloning, expression, and characterization of a new β-agarase from Vibrio sp. strain CN41. Appl. Environ. Microbiol. 77, 7077-7079
-
(2011)
Appl. Environ. Microbiol.
, vol.77
, pp. 7077-7079
-
-
Liao, L.1
Xu, X.W.2
Jiang, X.W.3
Cao, Y.4
Yi, N.5
Huo, Y.Y.6
Wu, Y.H.7
Zhu, X.F.8
Zhang, X.Q.9
Wu, M.10
-
19
-
-
0021003326
-
β-agarases i and II from Pseudomonas atlantica. Substrate specificities
-
Morrice, L. M., McLean, M. W., Long, W. F., and Williamson, F. B. (1983) β-agarases I and II from Pseudomonas atlantica. Substrate specificities. Eur. J. Biochem. 137, 149-154
-
(1983)
Eur. J. Biochem.
, vol.137
, pp. 149-154
-
-
Morrice, L.M.1
McLean, M.W.2
Long, W.F.3
Williamson, F.B.4
-
20
-
-
0021094207
-
β-Agarases i and II from Pseudomonas atlantica. Purifications and some properties
-
Morrice, L. M., McLean, M. W., Williamson, F. B., and Long, W. F. (1983) β-Agarases I and II from Pseudomonas atlantica. Purifications and some properties. Eur. J. Biochem. 135, 553-558
-
(1983)
Eur. J. Biochem.
, vol.135
, pp. 553-558
-
-
Morrice, L.M.1
McLean, M.W.2
Williamson, F.B.3
Long, W.F.4
-
21
-
-
0344012467
-
The three-dimensional structures of two β-Agarases
-
Allouch, J., Jam, M., Helbert, W., Barbeyron, T., Kloareg, B., Henrissat, B., and Czjzek, M. (2003) The three-dimensional structures of two β-agarases. J. Biol. Chem. 278, 47171-47180
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 47171-47180
-
-
Allouch, J.1
Jam, M.2
Helbert, W.3
Barbeyron, T.4
Kloareg, B.5
Henrissat, B.6
Czjzek, M.7
-
22
-
-
34248162825
-
Cloning, characterization, and molecular application of a β-agarase gene from Vibrio sp strain V134
-
Zhang, W. W., and Sun, L. (2007) Cloning, characterization, and molecular application of a β-agarase gene from Vibrio sp. strain V134. Appl. Environ. Microbiol. 73, 2825-2831
-
(2007)
Appl. Environ. Microbiol.
, vol.73
, pp. 2825-2831
-
-
Zhang, W.W.1
Sun, L.2
-
23
-
-
82355186063
-
Overexpression and biochemical characterization of DagA from Streptomyces coelicolor A3(2). An endo-type β-agarase producing neoagarotetraose and neoagarohexaose
-
Temuujin, U., Chi, W. J., Lee, S. Y., Chang, Y. K., and Hong, S. K. (2011) Overexpression and biochemical characterization of DagA from Streptomyces coelicolor A3(2). An endo-type β-agarase producing neoagarotetraose and neoagarohexaose. Appl. Microbiol. Biotechnol. 92, 749-759
-
(2011)
Appl. Microbiol. Biotechnol.
, vol.92
, pp. 749-759
-
-
Temuujin, U.1
Chi, W.J.2
Lee, S.Y.3
Chang, Y.K.4
Hong, S.K.5
-
24
-
-
77149150308
-
Overexpression and molecular characterization of Aga50D from Saccharophagus degradans 2-40. An exo-type β-agarase producing neoagarobiose
-
Kim, H. T., Lee, S., Lee, D., Kim, H. S., Bang, W. G., Kim, K. H., and Choi, I. G. (2010) Overexpression and molecular characterization of Aga50D from Saccharophagus degradans 2-40. An exo-type β-agarase producing neoagarobiose. Appl. Microbiol. Biotechnol. 86, 227-234
-
(2010)
Appl. Microbiol. Biotechnol.
, vol.86
, pp. 227-234
-
-
Kim, H.T.1
Lee, S.2
Lee, D.3
Kim, H.S.4
Bang, W.G.5
Kim, K.H.6
Choi, I.G.7
-
25
-
-
0029645404
-
Structures and mechanisms of glycosyl hydrolases
-
Davies, G., and Henrissat, B. (1995) Structures and mechanisms of glycosyl hydrolases. Structure 3, 853-859
-
(1995)
Structure
, vol.3
, pp. 853-859
-
-
Davies, G.1
Henrissat, B.2
-
26
-
-
84870351198
-
Bacteria of the human gut microbiome catabolize red seaweed glycans with carbohydrate-active enzyme updates from extrinsic microbes
-
Hehemann, J. H., Kelly, A. G., Pudlo, N. A., Martens, E. C., and Boraston, A. B. (2012) Bacteria of the human gut microbiome catabolize red seaweed glycans with carbohydrate-active enzyme updates from extrinsic microbes. Proc. Natl. Acad. Sci. U.S.A. 109, 19786-19791
-
(2012)
Proc. Natl. Acad. Sci. U.S.A.
, vol.109
, pp. 19786-19791
-
-
Hehemann, J.H.1
Kelly, A.G.2
Pudlo, N.A.3
Martens, E.C.4
Boraston, A.B.5
-
27
-
-
80052038763
-
Crystal structure of a key enzyme in the agarolytic pathway,β- neoagarobiose hydrolase from Saccharophagus degradans 2-40
-
Ha, S. C., Lee, S., Lee, J., Kim, H. T., Ko, H. J., Kim, K. H., and Choi, I. G. (2011) Crystal structure of a key enzyme in the agarolytic pathway,β-neoagarobiose hydrolase from Saccharophagus degradans 2-40. Biochem. Biophys. Res. Commun. 412, 238-244
-
(2011)
Biochem. Biophys. Res. Commun.
, vol.412
, pp. 238-244
-
-
Ha, S.C.1
Lee, S.2
Lee, J.3
Kim, H.T.4
Ko, H.J.5
Kim, K.H.6
Choi, I.G.7
-
28
-
-
79955037032
-
Discovery and structural characterization of a novel glycosidase family of marine origin
-
Rebuffet, E., Groisillier, A., Thompson, A., Jeudy, A., Barbeyron, T., Czjzek, M., and Michel, G. (2011) Discovery and structural characterization of a novel glycosidase family of marine origin. Environ. Microbiol. 13, 1253-1270
-
(2011)
Environ. Microbiol.
, vol.13
, pp. 1253-1270
-
-
Rebuffet, E.1
Groisillier, A.2
Thompson, A.3
Jeudy, A.4
Barbeyron, T.5
Czjzek, M.6
Michel, G.7
-
29
-
-
4744368323
-
Carbohydrate-binding modules. Fine-tuning polysaccharide recognition
-
Boraston, A. B., Bolam, D. N., Gilbert, H. J., and Davies, G. J. (2004) Carbohydrate-binding modules. Fine-tuning polysaccharide recognition. Biochem. J. 382, 769-781
-
(2004)
Biochem. J.
, vol.382
, pp. 769-781
-
-
Boraston, A.B.1
Bolam, D.N.2
Gilbert, H.J.3
Davies, G.J.4
-
31
-
-
79955427274
-
Analysis of a new family of widely distributed metal-independent β-mannosidases provides unique insight into the processing of N-linked glycans
-
Gregg, K. J., Zandberg, W. F., Hehemann, J. H., Whitworth, G. E., Deng, L., Vocadlo, D. J., and Boraston, A. B. (2011) Analysis of a new family of widely distributed metal-independent β-mannosidases provides unique insight into the processing of N-linked glycans. J. Biol. Chem. 286, 15586-15596
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 15586-15596
-
-
Gregg, K.J.1
Zandberg, W.F.2
Hehemann, J.H.3
Whitworth, G.E.4
Deng, L.5
Vocadlo, D.J.6
Boraston, A.B.7
-
32
-
-
0043122944
-
ExPASy. The proteomics server for in-depth protein knowledge and analysis
-
Gasteiger, E., Gattiker, A., Hoogland, C., Ivanyi, I., Appel, R. D., and Bairoch, A. (2003) ExPASy. The proteomics server for in-depth protein knowledge and analysis. Nucleic Acids Res. 31, 3784-3788
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3784-3788
-
-
Gasteiger, E.1
Gattiker, A.2
Hoogland, C.3
Ivanyi, I.4
Appel, R.D.5
Bairoch, A.6
-
33
-
-
0033212804
-
The Rossmann Fourier autoindexing algorithm in MOSFLM
-
Powell, H. R. (1999) The Rossmann Fourier autoindexing algorithm in MOSFLM. Acta Crystallogr. D Biol. Crystallogr. 55, 1690-1695
-
(1999)
Acta Crystallogr. D Biol. Crystallogr.
, vol.55
, pp. 1690-1695
-
-
Powell, H.R.1
-
34
-
-
0028103275
-
The CCP4 suite. Programs for protein crystallography
-
Collaborative Computational Project, Number 4
-
Collaborative Computational Project, Number 4 (1994) The CCP4 suite. Programs for protein crystallography. Acta Crystallogr.DBiol. Crystallogr. 50, 760-763
-
(1994)
Acta Crystallogr. D Biol. Crystallogr.
, vol.50
, pp. 760-763
-
-
-
36
-
-
0030924992
-
Refinement of macromolecular structures by the maximum-likelihood method
-
Murshudov, G. N., Vagin, A. A., and Dodson, E. J. (1997) Refinement of macromolecular structures by the maximum-likelihood method. Acta Crystallogr. D Biol. Crystallogr. 53, 240-255
-
(1997)
Acta Crystallogr. D Biol. Crystallogr.
, vol.53
, pp. 240-255
-
-
Murshudov, G.N.1
Vagin, A.A.2
Dodson, E.J.3
-
37
-
-
0026597444
-
Free R value. A novel statistical quantity for assessing the accuracy of crystal structures
-
Brünger, A. T. (1992) Free R value.Anovel statistical quantity for assessing the accuracy of crystal structures. Nature 355, 472-475
-
(1992)
Nature
, vol.355
, pp. 472-475
-
-
Brünger, A.T.1
-
38
-
-
0032922193
-
SFCHECK. A unified set of procedures for evaluating the quality of macromolecular structurefactor data and their agreement with the atomic model
-
Vaguine, A. A., Richelle, J., and Wodak, S. J. (1999) SFCHECK. A unified set of procedures for evaluating the quality of macromolecular structurefactor data and their agreement with the atomic model. Acta Crystallogr. D Biol. Crystallogr. 55, 191-205
-
(1999)
Acta Crystallogr. D Biol. Crystallogr.
, vol.55
, pp. 191-205
-
-
Vaguine, A.A.1
Richelle, J.2
Wodak, S.J.3
-
39
-
-
0027169515
-
Main-chain bond lengths and bond angles in protein structures
-
Laskowski, R. A., Moss, D. S., and Thornton, J. M. (1993) Main-chain bond lengths and bond angles in protein structures. J. Mol. Biol. 231, 1049-1067
-
(1993)
J. Mol. Biol.
, vol.231
, pp. 1049-1067
-
-
Laskowski, R.A.1
Moss, D.S.2
Thornton, J.M.3
-
40
-
-
34547592557
-
MolProbity. All-atom contacts and structure validation for proteins and nucleic acids
-
Davis, I. W., Leaver-Fay, A., Chen, V. B., Block, J. N., Kapral, G. J., Wang, X., Murray, L. W., Arendall, W. B., 3rd, Snoeyink, J., Richardson, J. S., and Richardson, D. C. (2007) MolProbity. All-atom contacts and structure validation for proteins and nucleic acids. Nucleic Acids Res. 35, W375-W383
-
(2007)
Nucleic Acids Res.
, vol.35
-
-
Davis, I.W.1
Leaver-Fay, A.2
Chen, V.B.3
Block, J.N.4
Kapral, G.J.5
Wang, X.6
Murray, L.W.7
Arendall III, W.B.8
Snoeyink, J.9
Richardson, J.S.10
Richardson, D.C.11
-
41
-
-
74549178560
-
MolProbity. All-atom structure validation for macromolecular crystallography
-
Chen, V. B., Arendall, W. B., 3rd, Headd, J. J., Keedy, D. A., Immormino, R. M., Kapral, G. J., Murray, L. W., Richardson, J. S., and Richardson, D. C. (2010) MolProbity. All-atom structure validation for macromolecular crystallography. Acta Crystallogr. D Biol. Crystallogr. 66, 12-21
-
(2010)
Acta Crystallogr. D Biol. Crystallogr.
, vol.66
, pp. 12-21
-
-
Chen, V.B.1
Arendall III, W.B.2
Headd, J.J.3
Keedy, D.A.4
Immormino, R.M.5
Kapral, G.J.6
Murray, L.W.7
Richardson, J.S.8
Richardson, D.C.9
-
42
-
-
36549027357
-
Automated structure solution with autoSHARP
-
Vonrhein, C., Blanc, E., Roversi, P., and Bricogne, G. (2007) Automated structure solution with autoSHARP. Methods Mol. Biol. 364, 215-230
-
(2007)
Methods Mol. Biol.
, vol.364
, pp. 215-230
-
-
Vonrhein, C.1
Blanc, E.2
Roversi, P.3
Bricogne, G.4
-
43
-
-
33748337934
-
The Buccaneer software for automated model building. Tracing protein chains
-
Cowtan, K. (2006) The Buccaneer software for automated model building. Tracing protein chains. Acta Crystallogr. D Biol. Crystallogr. 62, 1002-1011
-
(2006)
Acta Crystallogr. D Biol. Crystallogr.
, vol.62
, pp. 1002-1011
-
-
Cowtan, K.1
-
44
-
-
34447508216
-
Phaser crystallographic software
-
McCoy, A. J., Grosse-Kunstleve, R. W., Adams, P. D., Winn, M. D., Storoni, L. C., and Read, R. J. (2007) Phaser crystallographic software. J. Appl. Crystallogr. 40, 658-674
-
(2007)
J. Appl. Crystallogr.
, vol.40
, pp. 658-674
-
-
McCoy, A.J.1
Grosse-Kunstleve, R.W.2
Adams, P.D.3
Winn, M.D.4
Storoni, L.C.5
Read, R.J.6
-
45
-
-
13444307044
-
Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions
-
Krissinel, E., and Henrick, K. (2004) Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions. Acta Crystallogr. D Biol. Crystallogr. 60, 2256-2268
-
(2004)
Acta Crystallogr. D Biol. Crystallogr.
, vol.60
, pp. 2256-2268
-
-
Krissinel, E.1
Henrick, K.2
-
46
-
-
4544354845
-
The family 11 carbohydrate-binding module of Clostridium thermocellum Lic26A-Cel5E accommodates β-1,4-and β-1,3-1,4-mixed linked glucans at a single binding site
-
Carvalho, A. L., Goyal, A., Prates, J. A., Bolam, D. N., Gilbert, H. J., Pires, V. M., Ferreira, L. M., Planas, A., Romão, M. J., and Fontes, C. M. (2004) The family 11 carbohydrate-binding module of Clostridium thermocellum Lic26A-Cel5E accommodates β-1,4-and β-1,3-1,4-mixed linked glucans at a single binding site. J. Biol. Chem. 279, 34785-34793
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 34785-34793
-
-
Carvalho, A.L.1
Goyal, A.2
Prates, J.A.3
Bolam, D.N.4
Gilbert, H.J.5
Pires, V.M.6
Ferreira, L.M.7
Planas, A.8
Romão, M.J.9
Fontes, C.M.10
-
47
-
-
0037195075
-
Promiscuity in ligand-binding. The threedimensional structure of a Piromyces carbohydrate-binding module, CBM29-2, in complex with cello-and mannohexaose
-
Charnock, S. J., Bolam, D. N., Nurizzo, D., Szabó, L., McKie, V. A., Gilbert, H. J., and Davies, G. J. (2002) Promiscuity in ligand-binding. The threedimensional structure of a Piromyces carbohydrate-binding module, CBM29-2, in complex with cello-and mannohexaose. Proc. Natl. Acad. Sci. U.S.A. 99, 14077-14082
-
(2002)
Proc. Natl. Acad. Sci. U.S.A.
, vol.99
, pp. 14077-14082
-
-
Charnock, S.J.1
Bolam, D.N.2
Nurizzo, D.3
Szabó, L.4
McKie, V.A.5
Gilbert, H.J.6
Davies, G.J.7
-
48
-
-
84861180864
-
Small-angle X-ray scattering and crystallography. A winning combination for exploring the multimodular organization of cellulolytic macromolecular complexes
-
Czjzek, M., Fierobe, H. P., and Receveur-Bréchot, V. (2012) Small-angle X-ray scattering and crystallography. A winning combination for exploring the multimodular organization of cellulolytic macromolecular complexes. Methods Enzymol. 510, 183-210
-
(2012)
Methods Enzymol.
, vol.510
, pp. 183-210
-
-
Czjzek, M.1
Fierobe, H.P.2
Receveur-Bréchot, V.3
-
49
-
-
8844224107
-
Common inhibition of both β-glucosidases and β-mannosidases by isofagomine lactam reflects different conformational itineraries for pyranoside hydrolysis
-
Vincent, F., Gloster, T. M., Macdonald, J., Morland, C., Stick, R. V., Dias, F. M., Prates, J. A., Fontes, C. M., Gilbert, H. J., and Davies, G. J. (2004) Common inhibition of both β-glucosidases and β-mannosidases by isofagomine lactam reflects different conformational itineraries for pyranoside hydrolysis. Chembiochem 5, 1596-1599
-
(2004)
Chembiochem
, vol.5
, pp. 1596-1599
-
-
Vincent, F.1
Gloster, T.M.2
Macdonald, J.3
Morland, C.4
Stick, R.V.5
Dias, F.M.6
Prates, J.A.7
Fontes, C.M.8
Gilbert, H.J.9
Davies, G.J.10
-
50
-
-
0033955759
-
The three-dimensional structure of a Trichoderma reeseiβ-mannanase from glycoside hydrolase family
-
Sabini, E., Schubert, H., Murshudov, G., Wilson, K. S., Siika-Aho, M., and Penttilä, M. (2000) The three-dimensional structure of a Trichoderma reeseiβ-mannanase from glycoside hydrolase family. Acta Crystallogr.D Biol. Crystallogr. 56, 3-13
-
(2000)
Acta Crystallogr.D Biol. Crystallogr.
, vol.56
, pp. 3-13
-
-
Sabini, E.1
Schubert, H.2
Murshudov, G.3
Wilson, K.S.4
Siika-Aho, M.5
Penttilä, M.6
-
51
-
-
33645649204
-
Differential recognition of the type i and II H antigen acceptors by the human ABO(H) blood group A and B glycosyltransferases
-
Letts, J. A., Rose, N. L., Fang, Y. R., Barry, C. H., Borisova, S. N., Seto, N. O., Palcic, M. M., and Evans, S. V. (2006) Differential recognition of the type I and II H antigen acceptors by the human ABO(H) blood group A and B glycosyltransferases. J. Biol. Chem. 281, 3625-3632
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 3625-3632
-
-
Letts, J.A.1
Rose, N.L.2
Fang, Y.R.3
Barry, C.H.4
Borisova, S.N.5
Seto, N.O.6
Palcic, M.M.7
Evans, S.V.8
-
52
-
-
84867826597
-
Endo-β-D-1,4-mannanase from Chrysonilia sitophila displays a novel loop arrangement for substrate selectivity
-
Gonçalves, A. M., Silva, C. S., Madeira, T. I., Coelho, R., de Sanctis, D., San Romão, M. V., and Bento, I. (2012) Endo-β-D-1,4- mannanase from Chrysonilia sitophila displays a novel loop arrangement for substrate selectivity. Acta Crystallogr. D Biol. Crystallogr. 68, 1468-1478
-
(2012)
Acta Crystallogr. D Biol. Crystallogr.
, vol.68
, pp. 1468-1478
-
-
Gonçalves, A.M.1
Silva, C.S.2
Madeira, T.I.3
Coelho, R.4
De Sanctis, D.5
San Romão, M.V.6
Bento, I.7
-
53
-
-
0031015902
-
Nomenclature for sugar-binding subsites in glycosyl hydrolases
-
Davies, G. J., Wilson, K. S., and Henrissat, B. (1997) Nomenclature for sugar-binding subsites in glycosyl hydrolases. Biochem. J. 321, 557-559
-
(1997)
Biochem. J.
, vol.321
, pp. 557-559
-
-
Davies, G.J.1
Wilson, K.S.2
Henrissat, B.3
-
54
-
-
0036802905
-
Glycosidase mechanisms
-
Vasella, A., Davies, G. J., and Böhm, M. (2002) Glycosidase mechanisms. Curr. Opin. Chem. Biol. 6, 619-629
-
(2002)
Curr. Opin. Chem. Biol.
, vol.6
, pp. 619-629
-
-
Vasella, A.1
Davies, G.J.2
Böhm, M.3
-
55
-
-
0032539533
-
Structure of the Bacillus agaradherans family 5 endoglucanase at 1. 6 A and its cellobiose complex at 2.0 A resolution
-
Davies, G. J., Dauter, M., Brzozowski, A. M., Bjørnvad, M. E., Andersen, K. V., and Schülein, M. (1998) Structure of the Bacillus agaradherans family 5 endoglucanase at 1.6 A and its cellobiose complex at 2.0 A resolution. Biochemistry 37, 1926-1932
-
(1998)
Biochemistry
, vol.37
, pp. 1926-1932
-
-
Davies, G.J.1
Dauter, M.2
Brzozowski, A.M.3
Bjørnvad, M.E.4
Andersen, K.V.5
Schülein, M.6
-
56
-
-
58149200943
-
The Carbohydrate-Active EnZymes database (CAZy). An expert resource for glycogenomics
-
Cantarel, B. L., Coutinho, P. M., Rancurel, C., Bernard, T., Lombard, V., and Henrissat, B. (2009) The Carbohydrate-Active EnZymes database (CAZy). An expert resource for glycogenomics. Nucleic Acids Res. 37, D233-D238
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Cantarel, B.L.1
Coutinho, P.M.2
Rancurel, C.3
Bernard, T.4
Lombard, V.5
Henrissat, B.6
-
57
-
-
0014140609
-
Multiple attach hypothesis ofβ-amylase action. Action of porcine pancreatic, human salivary, and Aspergillus oryzae β-amylases
-
Robyt, J. F., and French, D. (1967) Multiple attach hypothesis ofβ-amylase action. Action of porcine pancreatic, human salivary, and Aspergillus oryzae β-amylases. Arch. Biochem. Biophys. 122, 8-16
-
(1967)
Arch. Biochem. Biophys.
, vol.122
, pp. 8-16
-
-
Robyt, J.F.1
French, D.2
-
58
-
-
0346915264
-
A study of the pattern of action of endo (1-3) β-D-glucanase from marine bivalves on a polymer substrate labelled at the reducing end
-
Bezukladnikov, P. V., and Elyakova, L. A. (1986) A study of the pattern of action of endo (1-3) β-D-glucanase from marine bivalves on a polymer substrate labelled at the reducing end. Carbohydr. Res. 152, 261-273
-
(1986)
Carbohydr. Res.
, vol.152
, pp. 261-273
-
-
Bezukladnikov, P.V.1
Elyakova, L.A.2
-
59
-
-
0032487130
-
Hydrolysis of microcrystalline cellulose by cellobiohydrolase i and endoglucanase II from Trichoderma reesei. Adsorption, sugar production pattern, and synergism of the enzymes
-
Medve, J., Karlsson, J., Lee, D., and Tjerneld, F. (1998) Hydrolysis of microcrystalline cellulose by cellobiohydrolase I and endoglucanase II from Trichoderma reesei. Adsorption, sugar production pattern, and synergism of the enzymes. Biotechnol. Bioeng. 59, 621-634
-
(1998)
Biotechnol. Bioeng.
, vol.59
, pp. 621-634
-
-
Medve, J.1
Karlsson, J.2
Lee, D.3
Tjerneld, F.4
-
60
-
-
12544256264
-
Degradation of chitosans with chitinase B from Serratia marcescens. Production of chito-oligosaccharides and insight into enzyme processivity
-
Sørbotten, A., Horn, S. J., Eijsink, V. G., and VArum, K. M. (2005) Degradation of chitosans with chitinase B from Serratia marcescens. Production of chito-oligosaccharides and insight into enzyme processivity. FEBS J. 272, 538-549
-
(2005)
FEBS J.
, vol.272
, pp. 538-549
-
-
Sørbotten, A.1
Horn, S.J.2
Eijsink, V.G.3
Varum, K.M.4
-
61
-
-
0242579170
-
The structural bases of the processive degradation of iota-carrageenan, a main cell wall polysaccharide of red algae
-
Michel, G., Helbert, W., Kahn, R., Dideberg, O., and Kloareg, B. (2003) The structural bases of the processive degradation of iota-carrageenan, a main cell wall polysaccharide of red algae. J. Mol. Biol. 334, 421-433
-
(2003)
J. Mol. Biol.
, vol.334
, pp. 421-433
-
-
Michel, G.1
Helbert, W.2
Kahn, R.3
Dideberg, O.4
Kloareg, B.5
-
62
-
-
0033083712
-
Kinetic characterization of Aspergillus niger N400 endopolygalacturonases I, II, and C
-
Benen, J. A., Kester, H. C., and Visser, J. (1999) Kinetic characterization of Aspergillus niger N400 endopolygalacturonases I, II, and C. Eur. J. Biochem. 259, 577-585
-
(1999)
Eur. J. Biochem.
, vol.259
, pp. 577-585
-
-
Benen, J.A.1
Kester, H.C.2
Visser, J.3
-
63
-
-
0025182502
-
Three-dimensional structure of cellobiohydrolase II from Trichoderma reesei
-
Rouvinen, J., Bergfors, T., Teeri, T., Knowles, J. K., and Jones, T. A. (1990) Three-dimensional structure of cellobiohydrolase II from Trichoderma reesei. Science 249, 380-386
-
(1990)
Science
, vol.249
, pp. 380-386
-
-
Rouvinen, J.1
Bergfors, T.2
Teeri, T.3
Knowles, J.K.4
Jones, T.A.5
-
64
-
-
0027968302
-
The three-dimensional crystal structure of the catalytic core of cellobiohydrolase i from Trichoderma reesei
-
Divne, C., StAhlberg, J., Reinikainen, T., Ruohonen, L., Pettersson, G., Knowles, J. K., Teeri, T. T., and Jones, T. A. (1994) The three-dimensional crystal structure of the catalytic core of cellobiohydrolase I from Trichoderma reesei. Science 265, 524-528
-
(1994)
Science
, vol.265
, pp. 524-528
-
-
Divne, C.1
Stahlberg, J.2
Reinikainen, T.3
Ruohonen, L.4
Pettersson, G.5
Knowles, J.K.6
Teeri, T.T.7
Jones, T.A.8
-
65
-
-
34548291339
-
The interplay of processivity, substrate inhibition and a secondary substrate binding site of an insect exo-β-1,3-glucanase
-
Genta, F. A., Dumont, A. F., Marana, S. R., Terra, W. R., and Ferreira, C. (2007) The interplay of processivity, substrate inhibition and a secondary substrate binding site of an insect exo-β-1,3-glucanase. Biochim. Biophys. Acta 1774, 1079-1091
-
(2007)
Biochim. Biophys. Acta
, vol.1774
, pp. 1079-1091
-
-
Genta, F.A.1
Dumont, A.F.2
Marana, S.R.3
Terra, W.R.4
Ferreira, C.5
-
66
-
-
0030759920
-
Structure and mechanism of endo/exocellulase E4 from Thermomonospora fusca
-
Sakon, J., Irwin, D., Wilson, D. B., and Karplus, P. A. (1997) Structure and mechanism of endo/exocellulase E4 from Thermomonospora fusca. Nat. Struct. Biol. 4, 810-818
-
(1997)
Nat. Struct. Biol.
, vol.4
, pp. 810-818
-
-
Sakon, J.1
Irwin, D.2
Wilson, D.B.3
Karplus, P.A.4
-
67
-
-
0037478772
-
X-ray crystal structure of the multidomain endoglucanase Cel9G from Clostridium cellulolyticum complexed with natural and synthetic cello-oligosaccharides
-
Mandelman, D., Belaich, A., Belaich, J. P., Aghajari, N., Driguez, H., and Haser, R. (2003) X-ray crystal structure of the multidomain endoglucanase Cel9G from Clostridium cellulolyticum complexed with natural and synthetic cello-oligosaccharides. J. Bacteriol. 185, 4127-4135
-
(2003)
J. Bacteriol.
, vol.185
, pp. 4127-4135
-
-
Mandelman, D.1
Belaich, A.2
Belaich, J.P.3
Aghajari, N.4
Driguez, H.5
Haser, R.6
-
68
-
-
79955840148
-
The conformation and function of a multimodular glycogen-degrading pneumococcal virulence factor
-
Lammerts van Bueren, A., Ficko-Blean, E., Pluvinage, B., Hehemann, J. H., Higgins, M. A., Deng, L., Ogunniyi, A. D., Stroeher, U. H., El Warry, N., Burke, R. D., Czjzek, M., Paton, J. C., Vocadlo, D. J., and Boraston, A. B. (2011) The conformation and function of a multimodular glycogen-degrading pneumococcal virulence factor. Structure 19, 640-651
-
(2011)
Structure
, vol.19
, pp. 640-651
-
-
Lammerts Van Bueren, A.1
Ficko-Blean, E.2
Pluvinage, B.3
Hehemann, J.H.4
Higgins, M.A.5
Deng, L.6
Ogunniyi, A.D.7
Stroeher, U.H.8
El Warry, N.9
Burke, R.D.10
Czjzek, M.11
Paton, J.C.12
Vocadlo, D.J.13
Boraston, A.B.14
-
69
-
-
84862869758
-
Agar degradation by microorganisms and agar-degrading enzymes
-
Chi, W. J., Chang, Y. K., and Hong, S. K. (2012) Agar degradation by microorganisms and agar-degrading enzymes. Appl. Microbiol. Biotechnol. 94, 917-930
-
(2012)
Appl. Microbiol. Biotechnol.
, vol.94
, pp. 917-930
-
-
Chi, W.J.1
Chang, Y.K.2
Hong, S.K.3
-
70
-
-
79953277907
-
Characterization of a Glycoside Hydrolase Family 50 Thermostable β-agarase AgrA from Marine Bacteria Agarivorans sp. AG17
-
Nikapitiya, C., Oh, C., Lee, Y., Lee, S., Whang, I., and Lee, J. (2010) Characterization of a Glycoside Hydrolase Family 50 Thermostable β-agarase AgrA from Marine Bacteria Agarivorans sp. AG17. Fish Aquat. Sci. 13, 36-48
-
(2010)
Fish Aquat. Sci.
, vol.13
, pp. 36-48
-
-
Nikapitiya, C.1
Oh, C.2
Lee, Y.3
Lee, S.4
Whang, I.5
Lee, J.6
-
71
-
-
84859268610
-
Gene cloning, expression and characterization of a neoagarotetraose- producing β-agarase from the marine bacterium Agarivorans sp. HZ105
-
Lin, B., Lu, G., Zheng, Y., Xie, W., Li, S., and Hu, Z. (2012) Gene cloning, expression and characterization of a neoagarotetraose-producing β-agarase from the marine bacterium Agarivorans sp. HZ105. World J. Microbiol. Biotechnol. 28, 1691-1697
-
(2012)
World J. Microbiol. Biotechnol.
, vol.28
, pp. 1691-1697
-
-
Lin, B.1
Lu, G.2
Zheng, Y.3
Xie, W.4
Li, S.5
Hu, Z.6
-
72
-
-
33750970019
-
Cloning, expression, and characterization of a glycoside hydrolase family 50 β-agarase from a marine Agarivorans isolate
-
Lee, D. G., Park, G. T., Kim, N. Y., Lee, E. J., Jang, M. K., Shin, Y. G., Park, G. S., Kim, T. M., Lee, J. H., Lee, J. H., Kim, S. J., and Lee, S. H. (2006) Cloning, expression, and characterization of a glycoside hydrolase family 50 β-agarase from a marine Agarivorans isolate. Biotechnol. Lett. 28, 1925-1932
-
(2006)
Biotechnol. Lett.
, vol.28
, pp. 1925-1932
-
-
Lee, D.G.1
Park, G.T.2
Kim, N.Y.3
Lee, E.J.4
Jang, M.K.5
Shin, Y.G.6
Park, G.S.7
Kim, T.M.8
Lee, J.H.9
Lee, J.H.10
Kim, S.J.11
Lee, S.H.12
-
73
-
-
17144381631
-
High-level expression of a neoagarobiose-producing β-agarase gene from Agarivorans sp. JAMB-A. 11 in Bacillus subtilis and enzymic properties of the recombinant enzyme
-
Ohta, Y., Hatada, Y., Ito, S., and Horikoshi, K. (2005) High-level expression of a neoagarobiose-producing β-agarase gene from Agarivorans sp. JAMB-A11 in Bacillus subtilis and enzymic properties of the recombinant enzyme. Biotechnol. Appl. Biochem. 41, 183-191
-
(2005)
Biotechnol. Appl. Biochem.
, vol.41
, pp. 183-191
-
-
Ohta, Y.1
Hatada, Y.2
Ito, S.3
Horikoshi, K.4
-
74
-
-
0032914286
-
Purification and characterization of a novel β-agarase from an alkalophilic bacterium, Alteromonas sp. E-1
-
Kirimura, K., Masuda, N., Iwasaki, Y., Nakagawa, H., Kobayashi, R., and Usami, S. (1999) Purification and characterization of a novel β-agarase from an alkalophilic bacterium, Alteromonas sp. E-1. J. Biosci. Bioeng. 87, 436-441
-
(1999)
J. Biosci. Bioeng.
, vol.87
, pp. 436-441
-
-
Kirimura, K.1
Masuda, N.2
Iwasaki, Y.3
Nakagawa, H.4
Kobayashi, R.5
Usami, S.6
-
75
-
-
0027430309
-
Cloning and sequencing of agaA, a unique agarase 0107 gene from a marine bacterium, Vibrio sp strain JT0107
-
Sugano, Y., Matsumoto, T., Kodama, H., and Noma, M. (1993) Cloning and sequencing of agaA, a unique agarase 0107 gene from a marine bacterium, Vibrio sp. strain JT0107. Appl. Environ. Microbiol. 59, 3750-3756
-
(1993)
Appl. Environ. Microbiol.
, vol.59
, pp. 3750-3756
-
-
Sugano, Y.1
Matsumoto, T.2
Kodama, H.3
Noma, M.4
-
76
-
-
0028242452
-
Sequence analysis of the agaB gene encoding a new β-agarase from Vibrio sp strain JT0107
-
Sugano, Y., Matsumoto, T., and Noma, M. (1994) Sequence analysis of the agaB gene encoding a new β-agarase from Vibrio sp. strain JT0107. Biochim. Biophys. Acta 1218, 105-108
-
(1994)
Biochim. Biophys. Acta
, vol.1218
, pp. 105-108
-
-
Sugano, Y.1
Matsumoto, T.2
Noma, M.3
-
77
-
-
0032566284
-
Snapshots along an enzymatic reaction coordinate. Analysis of a retaining β-glycoside hydrolase
-
Davies, G. J., Mackenzie, L., Varrot, A., Dauter, M., Brzozowski, A. M., Schülein, M., and Withers, S. G. (1998) Snapshots along an enzymatic reaction coordinate. Analysis of a retaining β-glycoside hydrolase. Biochemistry 37, 11707-11713
-
(1998)
Biochemistry
, vol.37
, pp. 11707-11713
-
-
Davies, G.J.1
Mackenzie, L.2
Varrot, A.3
Dauter, M.4
Brzozowski, A.M.5
Schülein, M.6
Withers, S.G.7
|