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Volumn 288, Issue 39, 2013, Pages 28078-28088

Substrate recognition and hydrolysis by a family 50 exo-β-agarase, aga50D, from the marine bacterium Saccharophagus degradans

Author keywords

[No Author keywords available]

Indexed keywords

ACTIVE SITE ARCHITECTURE; CATALYTIC MECHANISMS; GLYCOSIDE HYDROLASES; MARINE BACTERIUM; MICHAELIS COMPLEX; SACCHAROPHAGUS DEGRADANS; STRUCTURAL WORKS; SUBSTRATE RECOGNITION;

EID: 84884773798     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M113.491068     Document Type: Article
Times cited : (59)

References (77)
  • 1
    • 34548718221 scopus 로고    scopus 로고
    • Microbial structuring of marine ecosystems
    • Azam, F., and Malfatti, F. (2007) Microbial structuring of marine ecosystems. Nat. Rev. Microbiol. 5, 782-791
    • (2007) Nat. Rev. Microbiol. , vol.5 , pp. 782-791
    • Azam, F.1    Malfatti, F.2
  • 2
    • 0036547697 scopus 로고    scopus 로고
    • Structural enzymology of carbohydrate-active enzymes. Implications for the post-genomic era
    • Davies, G. J., and Henrissat, B. (2002) Structural enzymology of carbohydrate-active enzymes. Implications for the post-genomic era. Biochem. Soc. Trans. 30, 291-297
    • (2002) Biochem. Soc. Trans. , vol.30 , pp. 291-297
    • Davies, G.J.1    Henrissat, B.2
  • 3
    • 79951588928 scopus 로고    scopus 로고
    • Microbial extracellular enzymes and the marine carbon cycle
    • Arnosti, C. (2011) Microbial extracellular enzymes and the marine carbon cycle. Annu. Rev. Marine Sci. 3, 401-425
    • (2011) Annu. Rev. Marine Sci. , vol.3 , pp. 401-425
    • Arnosti, C.1
  • 4
    • 38049120268 scopus 로고    scopus 로고
    • Polysaccharide hydrolysis in aggregates and free enzyme activity in aggregate-free seawater from the northeastern Gulf of Mexico
    • Ziervogel, K., and Arnosti, C. (2008) Polysaccharide hydrolysis in aggregates and free enzyme activity in aggregate-free seawater from the northeastern Gulf of Mexico. Environ. Microbiol. 10, 289-299
    • (2008) Environ. Microbiol. , vol.10 , pp. 289-299
    • Ziervogel, K.1    Arnosti, C.2
  • 5
    • 0028010368 scopus 로고
    • A modified system of nomenclature for red algal galactans
    • Knutsen, S., Myslabodski, D., Larsen, B., and Usov, A. (1994) A modified system of nomenclature for red algal galactans. Bot. Mar. 37, 163-169
    • (1994) Bot. Mar. , vol.37 , pp. 163-169
    • Knutsen, S.1    Myslabodski, D.2    Larsen, B.3    Usov, A.4
  • 7
    • 1842554929 scopus 로고    scopus 로고
    • Parallel substrate binding sites in a β-agarase suggest a novel mode of action on double-helical agarose
    • Allouch, J., Helbert, W., Henrissat, B., and Czjzek, M. (2004) Parallel substrate binding sites in a β-agarase suggest a novel mode of action on double-helical agarose. Structure 12, 623-632
    • (2004) Structure , vol.12 , pp. 623-632
    • Allouch, J.1    Helbert, W.2    Henrissat, B.3    Czjzek, M.4
  • 10
    • 33745289829 scopus 로고    scopus 로고
    • Thalassomonas agarivorans sp nov., a marine agarolytic bacterium isolated from shallow coastal water of An-Ping Harbour, Taiwan, and emended description of the genus Thalassomonas
    • Jean, W. D., Shieh, W. Y., and Liu, T. Y. (2006) Thalassomonas agarivorans sp. nov., a marine agarolytic bacterium isolated from shallow coastal water of An-Ping Harbour, Taiwan, and emended description of the genus Thalassomonas. Int. J. Syst. Evol. Microbiol. 56, 1245-1250
    • (2006) Int. J. Syst. Evol. Microbiol. , vol.56 , pp. 1245-1250
    • Jean, W.D.1    Shieh, W.Y.2    Liu, T.Y.3
  • 11
    • 84865715282 scopus 로고    scopus 로고
    • Biochemical and structural characterization of the complex agarolytic enzyme system from the marine bacterium Zobellia galactanivorans
    • Hehemann, J. H., Correc, G., Thomas, F., Bernard, T., Barbeyron, T., Jam, M., Helbert, W., Michel, G., and Czjzek, M. (2012) Biochemical and structural characterization of the complex agarolytic enzyme system from the marine bacterium Zobellia galactanivorans. J. Biol. Chem. 287, 30571-30584
    • (2012) J. Biol. Chem. , vol.287 , pp. 30571-30584
    • Hehemann, J.H.1    Correc, G.2    Thomas, F.3    Bernard, T.4    Barbeyron, T.5    Jam, M.6    Helbert, W.7    Michel, G.8    Czjzek, M.9
  • 12
    • 84871075875 scopus 로고    scopus 로고
    • Identification of a novel agarolytic β-proteobacterium Microbulbifer maritimus and characterization of its agarase
    • Vijayaraghavan, R., and Rajendran, S. (2012) Identification of a novel agarolytic β-proteobacterium Microbulbifer maritimus and characterization of its agarase. J. Basic Microbiol. 52, 705-712
    • (2012) J. Basic Microbiol. , vol.52 , pp. 705-712
    • Vijayaraghavan, R.1    Rajendran, S.2
  • 13
    • 58249111564 scopus 로고    scopus 로고
    • Production and purification of agarase from a marine agarolytic bacterium Agarivorans sp. HZ105
    • Hu, Z., Lin, B. K., Xu, Y., Zhong, M. Q., and Liu, G. M. (2009) Production and purification of agarase from a marine agarolytic bacterium Agarivorans sp. HZ105. J. Appl. Microbiol. 106, 181-190
    • (2009) J. Appl. Microbiol. , vol.106 , pp. 181-190
    • Hu, Z.1    Lin, B.K.2    Xu, Y.3    Zhong, M.Q.4    Liu, G.M.5
  • 16
    • 76149111967 scopus 로고    scopus 로고
    • Agarase. Review of major sources, categories, purification method, enzyme characteristics and applications
    • Fu, X. T., and Kim, S. M. (2010) Agarase. Review of major sources, categories, purification method, enzyme characteristics and applications. Mar. Drugs 8, 200-218
    • (2010) Mar. Drugs , vol.8 , pp. 200-218
    • Fu, X.T.1    Kim, S.M.2
  • 17
    • 84859941695 scopus 로고    scopus 로고
    • Analysis of keystone enzyme in agar hydrolysis provides insight into the degradation (of a polysaccharide from) red seaweeds
    • Hehemann, J. H., Smyth, L., Yadav, A., Vocadlo, D. J., and Boraston, A. B. (2012) Analysis of keystone enzyme in agar hydrolysis provides insight into the degradation (of a polysaccharide from) red seaweeds. J. Biol. Chem. 287, 13985-13995
    • (2012) J. Biol. Chem. , vol.287 , pp. 13985-13995
    • Hehemann, J.H.1    Smyth, L.2    Yadav, A.3    Vocadlo, D.J.4    Boraston, A.B.5
  • 19
    • 0021003326 scopus 로고
    • β-agarases i and II from Pseudomonas atlantica. Substrate specificities
    • Morrice, L. M., McLean, M. W., Long, W. F., and Williamson, F. B. (1983) β-agarases I and II from Pseudomonas atlantica. Substrate specificities. Eur. J. Biochem. 137, 149-154
    • (1983) Eur. J. Biochem. , vol.137 , pp. 149-154
    • Morrice, L.M.1    McLean, M.W.2    Long, W.F.3    Williamson, F.B.4
  • 20
    • 0021094207 scopus 로고
    • β-Agarases i and II from Pseudomonas atlantica. Purifications and some properties
    • Morrice, L. M., McLean, M. W., Williamson, F. B., and Long, W. F. (1983) β-Agarases I and II from Pseudomonas atlantica. Purifications and some properties. Eur. J. Biochem. 135, 553-558
    • (1983) Eur. J. Biochem. , vol.135 , pp. 553-558
    • Morrice, L.M.1    McLean, M.W.2    Williamson, F.B.3    Long, W.F.4
  • 22
    • 34248162825 scopus 로고    scopus 로고
    • Cloning, characterization, and molecular application of a β-agarase gene from Vibrio sp strain V134
    • Zhang, W. W., and Sun, L. (2007) Cloning, characterization, and molecular application of a β-agarase gene from Vibrio sp. strain V134. Appl. Environ. Microbiol. 73, 2825-2831
    • (2007) Appl. Environ. Microbiol. , vol.73 , pp. 2825-2831
    • Zhang, W.W.1    Sun, L.2
  • 23
    • 82355186063 scopus 로고    scopus 로고
    • Overexpression and biochemical characterization of DagA from Streptomyces coelicolor A3(2). An endo-type β-agarase producing neoagarotetraose and neoagarohexaose
    • Temuujin, U., Chi, W. J., Lee, S. Y., Chang, Y. K., and Hong, S. K. (2011) Overexpression and biochemical characterization of DagA from Streptomyces coelicolor A3(2). An endo-type β-agarase producing neoagarotetraose and neoagarohexaose. Appl. Microbiol. Biotechnol. 92, 749-759
    • (2011) Appl. Microbiol. Biotechnol. , vol.92 , pp. 749-759
    • Temuujin, U.1    Chi, W.J.2    Lee, S.Y.3    Chang, Y.K.4    Hong, S.K.5
  • 24
    • 77149150308 scopus 로고    scopus 로고
    • Overexpression and molecular characterization of Aga50D from Saccharophagus degradans 2-40. An exo-type β-agarase producing neoagarobiose
    • Kim, H. T., Lee, S., Lee, D., Kim, H. S., Bang, W. G., Kim, K. H., and Choi, I. G. (2010) Overexpression and molecular characterization of Aga50D from Saccharophagus degradans 2-40. An exo-type β-agarase producing neoagarobiose. Appl. Microbiol. Biotechnol. 86, 227-234
    • (2010) Appl. Microbiol. Biotechnol. , vol.86 , pp. 227-234
    • Kim, H.T.1    Lee, S.2    Lee, D.3    Kim, H.S.4    Bang, W.G.5    Kim, K.H.6    Choi, I.G.7
  • 25
    • 0029645404 scopus 로고
    • Structures and mechanisms of glycosyl hydrolases
    • Davies, G., and Henrissat, B. (1995) Structures and mechanisms of glycosyl hydrolases. Structure 3, 853-859
    • (1995) Structure , vol.3 , pp. 853-859
    • Davies, G.1    Henrissat, B.2
  • 26
    • 84870351198 scopus 로고    scopus 로고
    • Bacteria of the human gut microbiome catabolize red seaweed glycans with carbohydrate-active enzyme updates from extrinsic microbes
    • Hehemann, J. H., Kelly, A. G., Pudlo, N. A., Martens, E. C., and Boraston, A. B. (2012) Bacteria of the human gut microbiome catabolize red seaweed glycans with carbohydrate-active enzyme updates from extrinsic microbes. Proc. Natl. Acad. Sci. U.S.A. 109, 19786-19791
    • (2012) Proc. Natl. Acad. Sci. U.S.A. , vol.109 , pp. 19786-19791
    • Hehemann, J.H.1    Kelly, A.G.2    Pudlo, N.A.3    Martens, E.C.4    Boraston, A.B.5
  • 27
    • 80052038763 scopus 로고    scopus 로고
    • Crystal structure of a key enzyme in the agarolytic pathway,β- neoagarobiose hydrolase from Saccharophagus degradans 2-40
    • Ha, S. C., Lee, S., Lee, J., Kim, H. T., Ko, H. J., Kim, K. H., and Choi, I. G. (2011) Crystal structure of a key enzyme in the agarolytic pathway,β-neoagarobiose hydrolase from Saccharophagus degradans 2-40. Biochem. Biophys. Res. Commun. 412, 238-244
    • (2011) Biochem. Biophys. Res. Commun. , vol.412 , pp. 238-244
    • Ha, S.C.1    Lee, S.2    Lee, J.3    Kim, H.T.4    Ko, H.J.5    Kim, K.H.6    Choi, I.G.7
  • 29
    • 4744368323 scopus 로고    scopus 로고
    • Carbohydrate-binding modules. Fine-tuning polysaccharide recognition
    • Boraston, A. B., Bolam, D. N., Gilbert, H. J., and Davies, G. J. (2004) Carbohydrate-binding modules. Fine-tuning polysaccharide recognition. Biochem. J. 382, 769-781
    • (2004) Biochem. J. , vol.382 , pp. 769-781
    • Boraston, A.B.1    Bolam, D.N.2    Gilbert, H.J.3    Davies, G.J.4
  • 31
    • 79955427274 scopus 로고    scopus 로고
    • Analysis of a new family of widely distributed metal-independent β-mannosidases provides unique insight into the processing of N-linked glycans
    • Gregg, K. J., Zandberg, W. F., Hehemann, J. H., Whitworth, G. E., Deng, L., Vocadlo, D. J., and Boraston, A. B. (2011) Analysis of a new family of widely distributed metal-independent β-mannosidases provides unique insight into the processing of N-linked glycans. J. Biol. Chem. 286, 15586-15596
    • (2011) J. Biol. Chem. , vol.286 , pp. 15586-15596
    • Gregg, K.J.1    Zandberg, W.F.2    Hehemann, J.H.3    Whitworth, G.E.4    Deng, L.5    Vocadlo, D.J.6    Boraston, A.B.7
  • 33
    • 0033212804 scopus 로고    scopus 로고
    • The Rossmann Fourier autoindexing algorithm in MOSFLM
    • Powell, H. R. (1999) The Rossmann Fourier autoindexing algorithm in MOSFLM. Acta Crystallogr. D Biol. Crystallogr. 55, 1690-1695
    • (1999) Acta Crystallogr. D Biol. Crystallogr. , vol.55 , pp. 1690-1695
    • Powell, H.R.1
  • 34
    • 0028103275 scopus 로고
    • The CCP4 suite. Programs for protein crystallography
    • Collaborative Computational Project, Number 4
    • Collaborative Computational Project, Number 4 (1994) The CCP4 suite. Programs for protein crystallography. Acta Crystallogr.DBiol. Crystallogr. 50, 760-763
    • (1994) Acta Crystallogr. D Biol. Crystallogr. , vol.50 , pp. 760-763
  • 35
  • 37
    • 0026597444 scopus 로고
    • Free R value. A novel statistical quantity for assessing the accuracy of crystal structures
    • Brünger, A. T. (1992) Free R value.Anovel statistical quantity for assessing the accuracy of crystal structures. Nature 355, 472-475
    • (1992) Nature , vol.355 , pp. 472-475
    • Brünger, A.T.1
  • 38
    • 0032922193 scopus 로고    scopus 로고
    • SFCHECK. A unified set of procedures for evaluating the quality of macromolecular structurefactor data and their agreement with the atomic model
    • Vaguine, A. A., Richelle, J., and Wodak, S. J. (1999) SFCHECK. A unified set of procedures for evaluating the quality of macromolecular structurefactor data and their agreement with the atomic model. Acta Crystallogr. D Biol. Crystallogr. 55, 191-205
    • (1999) Acta Crystallogr. D Biol. Crystallogr. , vol.55 , pp. 191-205
    • Vaguine, A.A.1    Richelle, J.2    Wodak, S.J.3
  • 39
    • 0027169515 scopus 로고
    • Main-chain bond lengths and bond angles in protein structures
    • Laskowski, R. A., Moss, D. S., and Thornton, J. M. (1993) Main-chain bond lengths and bond angles in protein structures. J. Mol. Biol. 231, 1049-1067
    • (1993) J. Mol. Biol. , vol.231 , pp. 1049-1067
    • Laskowski, R.A.1    Moss, D.S.2    Thornton, J.M.3
  • 43
    • 33748337934 scopus 로고    scopus 로고
    • The Buccaneer software for automated model building. Tracing protein chains
    • Cowtan, K. (2006) The Buccaneer software for automated model building. Tracing protein chains. Acta Crystallogr. D Biol. Crystallogr. 62, 1002-1011
    • (2006) Acta Crystallogr. D Biol. Crystallogr. , vol.62 , pp. 1002-1011
    • Cowtan, K.1
  • 45
    • 13444307044 scopus 로고    scopus 로고
    • Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions
    • Krissinel, E., and Henrick, K. (2004) Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions. Acta Crystallogr. D Biol. Crystallogr. 60, 2256-2268
    • (2004) Acta Crystallogr. D Biol. Crystallogr. , vol.60 , pp. 2256-2268
    • Krissinel, E.1    Henrick, K.2
  • 46
    • 4544354845 scopus 로고    scopus 로고
    • The family 11 carbohydrate-binding module of Clostridium thermocellum Lic26A-Cel5E accommodates β-1,4-and β-1,3-1,4-mixed linked glucans at a single binding site
    • Carvalho, A. L., Goyal, A., Prates, J. A., Bolam, D. N., Gilbert, H. J., Pires, V. M., Ferreira, L. M., Planas, A., Romão, M. J., and Fontes, C. M. (2004) The family 11 carbohydrate-binding module of Clostridium thermocellum Lic26A-Cel5E accommodates β-1,4-and β-1,3-1,4-mixed linked glucans at a single binding site. J. Biol. Chem. 279, 34785-34793
    • (2004) J. Biol. Chem. , vol.279 , pp. 34785-34793
    • Carvalho, A.L.1    Goyal, A.2    Prates, J.A.3    Bolam, D.N.4    Gilbert, H.J.5    Pires, V.M.6    Ferreira, L.M.7    Planas, A.8    Romão, M.J.9    Fontes, C.M.10
  • 47
    • 0037195075 scopus 로고    scopus 로고
    • Promiscuity in ligand-binding. The threedimensional structure of a Piromyces carbohydrate-binding module, CBM29-2, in complex with cello-and mannohexaose
    • Charnock, S. J., Bolam, D. N., Nurizzo, D., Szabó, L., McKie, V. A., Gilbert, H. J., and Davies, G. J. (2002) Promiscuity in ligand-binding. The threedimensional structure of a Piromyces carbohydrate-binding module, CBM29-2, in complex with cello-and mannohexaose. Proc. Natl. Acad. Sci. U.S.A. 99, 14077-14082
    • (2002) Proc. Natl. Acad. Sci. U.S.A. , vol.99 , pp. 14077-14082
    • Charnock, S.J.1    Bolam, D.N.2    Nurizzo, D.3    Szabó, L.4    McKie, V.A.5    Gilbert, H.J.6    Davies, G.J.7
  • 48
    • 84861180864 scopus 로고    scopus 로고
    • Small-angle X-ray scattering and crystallography. A winning combination for exploring the multimodular organization of cellulolytic macromolecular complexes
    • Czjzek, M., Fierobe, H. P., and Receveur-Bréchot, V. (2012) Small-angle X-ray scattering and crystallography. A winning combination for exploring the multimodular organization of cellulolytic macromolecular complexes. Methods Enzymol. 510, 183-210
    • (2012) Methods Enzymol. , vol.510 , pp. 183-210
    • Czjzek, M.1    Fierobe, H.P.2    Receveur-Bréchot, V.3
  • 49
    • 8844224107 scopus 로고    scopus 로고
    • Common inhibition of both β-glucosidases and β-mannosidases by isofagomine lactam reflects different conformational itineraries for pyranoside hydrolysis
    • Vincent, F., Gloster, T. M., Macdonald, J., Morland, C., Stick, R. V., Dias, F. M., Prates, J. A., Fontes, C. M., Gilbert, H. J., and Davies, G. J. (2004) Common inhibition of both β-glucosidases and β-mannosidases by isofagomine lactam reflects different conformational itineraries for pyranoside hydrolysis. Chembiochem 5, 1596-1599
    • (2004) Chembiochem , vol.5 , pp. 1596-1599
    • Vincent, F.1    Gloster, T.M.2    Macdonald, J.3    Morland, C.4    Stick, R.V.5    Dias, F.M.6    Prates, J.A.7    Fontes, C.M.8    Gilbert, H.J.9    Davies, G.J.10
  • 51
    • 33645649204 scopus 로고    scopus 로고
    • Differential recognition of the type i and II H antigen acceptors by the human ABO(H) blood group A and B glycosyltransferases
    • Letts, J. A., Rose, N. L., Fang, Y. R., Barry, C. H., Borisova, S. N., Seto, N. O., Palcic, M. M., and Evans, S. V. (2006) Differential recognition of the type I and II H antigen acceptors by the human ABO(H) blood group A and B glycosyltransferases. J. Biol. Chem. 281, 3625-3632
    • (2006) J. Biol. Chem. , vol.281 , pp. 3625-3632
    • Letts, J.A.1    Rose, N.L.2    Fang, Y.R.3    Barry, C.H.4    Borisova, S.N.5    Seto, N.O.6    Palcic, M.M.7    Evans, S.V.8
  • 53
    • 0031015902 scopus 로고    scopus 로고
    • Nomenclature for sugar-binding subsites in glycosyl hydrolases
    • Davies, G. J., Wilson, K. S., and Henrissat, B. (1997) Nomenclature for sugar-binding subsites in glycosyl hydrolases. Biochem. J. 321, 557-559
    • (1997) Biochem. J. , vol.321 , pp. 557-559
    • Davies, G.J.1    Wilson, K.S.2    Henrissat, B.3
  • 55
    • 0032539533 scopus 로고    scopus 로고
    • Structure of the Bacillus agaradherans family 5 endoglucanase at 1. 6 A and its cellobiose complex at 2.0 A resolution
    • Davies, G. J., Dauter, M., Brzozowski, A. M., Bjørnvad, M. E., Andersen, K. V., and Schülein, M. (1998) Structure of the Bacillus agaradherans family 5 endoglucanase at 1.6 A and its cellobiose complex at 2.0 A resolution. Biochemistry 37, 1926-1932
    • (1998) Biochemistry , vol.37 , pp. 1926-1932
    • Davies, G.J.1    Dauter, M.2    Brzozowski, A.M.3    Bjørnvad, M.E.4    Andersen, K.V.5    Schülein, M.6
  • 57
    • 0014140609 scopus 로고
    • Multiple attach hypothesis ofβ-amylase action. Action of porcine pancreatic, human salivary, and Aspergillus oryzae β-amylases
    • Robyt, J. F., and French, D. (1967) Multiple attach hypothesis ofβ-amylase action. Action of porcine pancreatic, human salivary, and Aspergillus oryzae β-amylases. Arch. Biochem. Biophys. 122, 8-16
    • (1967) Arch. Biochem. Biophys. , vol.122 , pp. 8-16
    • Robyt, J.F.1    French, D.2
  • 58
    • 0346915264 scopus 로고
    • A study of the pattern of action of endo (1-3) β-D-glucanase from marine bivalves on a polymer substrate labelled at the reducing end
    • Bezukladnikov, P. V., and Elyakova, L. A. (1986) A study of the pattern of action of endo (1-3) β-D-glucanase from marine bivalves on a polymer substrate labelled at the reducing end. Carbohydr. Res. 152, 261-273
    • (1986) Carbohydr. Res. , vol.152 , pp. 261-273
    • Bezukladnikov, P.V.1    Elyakova, L.A.2
  • 59
    • 0032487130 scopus 로고    scopus 로고
    • Hydrolysis of microcrystalline cellulose by cellobiohydrolase i and endoglucanase II from Trichoderma reesei. Adsorption, sugar production pattern, and synergism of the enzymes
    • Medve, J., Karlsson, J., Lee, D., and Tjerneld, F. (1998) Hydrolysis of microcrystalline cellulose by cellobiohydrolase I and endoglucanase II from Trichoderma reesei. Adsorption, sugar production pattern, and synergism of the enzymes. Biotechnol. Bioeng. 59, 621-634
    • (1998) Biotechnol. Bioeng. , vol.59 , pp. 621-634
    • Medve, J.1    Karlsson, J.2    Lee, D.3    Tjerneld, F.4
  • 60
    • 12544256264 scopus 로고    scopus 로고
    • Degradation of chitosans with chitinase B from Serratia marcescens. Production of chito-oligosaccharides and insight into enzyme processivity
    • Sørbotten, A., Horn, S. J., Eijsink, V. G., and VArum, K. M. (2005) Degradation of chitosans with chitinase B from Serratia marcescens. Production of chito-oligosaccharides and insight into enzyme processivity. FEBS J. 272, 538-549
    • (2005) FEBS J. , vol.272 , pp. 538-549
    • Sørbotten, A.1    Horn, S.J.2    Eijsink, V.G.3    Varum, K.M.4
  • 61
    • 0242579170 scopus 로고    scopus 로고
    • The structural bases of the processive degradation of iota-carrageenan, a main cell wall polysaccharide of red algae
    • Michel, G., Helbert, W., Kahn, R., Dideberg, O., and Kloareg, B. (2003) The structural bases of the processive degradation of iota-carrageenan, a main cell wall polysaccharide of red algae. J. Mol. Biol. 334, 421-433
    • (2003) J. Mol. Biol. , vol.334 , pp. 421-433
    • Michel, G.1    Helbert, W.2    Kahn, R.3    Dideberg, O.4    Kloareg, B.5
  • 62
    • 0033083712 scopus 로고    scopus 로고
    • Kinetic characterization of Aspergillus niger N400 endopolygalacturonases I, II, and C
    • Benen, J. A., Kester, H. C., and Visser, J. (1999) Kinetic characterization of Aspergillus niger N400 endopolygalacturonases I, II, and C. Eur. J. Biochem. 259, 577-585
    • (1999) Eur. J. Biochem. , vol.259 , pp. 577-585
    • Benen, J.A.1    Kester, H.C.2    Visser, J.3
  • 63
    • 0025182502 scopus 로고
    • Three-dimensional structure of cellobiohydrolase II from Trichoderma reesei
    • Rouvinen, J., Bergfors, T., Teeri, T., Knowles, J. K., and Jones, T. A. (1990) Three-dimensional structure of cellobiohydrolase II from Trichoderma reesei. Science 249, 380-386
    • (1990) Science , vol.249 , pp. 380-386
    • Rouvinen, J.1    Bergfors, T.2    Teeri, T.3    Knowles, J.K.4    Jones, T.A.5
  • 64
  • 65
    • 34548291339 scopus 로고    scopus 로고
    • The interplay of processivity, substrate inhibition and a secondary substrate binding site of an insect exo-β-1,3-glucanase
    • Genta, F. A., Dumont, A. F., Marana, S. R., Terra, W. R., and Ferreira, C. (2007) The interplay of processivity, substrate inhibition and a secondary substrate binding site of an insect exo-β-1,3-glucanase. Biochim. Biophys. Acta 1774, 1079-1091
    • (2007) Biochim. Biophys. Acta , vol.1774 , pp. 1079-1091
    • Genta, F.A.1    Dumont, A.F.2    Marana, S.R.3    Terra, W.R.4    Ferreira, C.5
  • 66
    • 0030759920 scopus 로고    scopus 로고
    • Structure and mechanism of endo/exocellulase E4 from Thermomonospora fusca
    • Sakon, J., Irwin, D., Wilson, D. B., and Karplus, P. A. (1997) Structure and mechanism of endo/exocellulase E4 from Thermomonospora fusca. Nat. Struct. Biol. 4, 810-818
    • (1997) Nat. Struct. Biol. , vol.4 , pp. 810-818
    • Sakon, J.1    Irwin, D.2    Wilson, D.B.3    Karplus, P.A.4
  • 67
    • 0037478772 scopus 로고    scopus 로고
    • X-ray crystal structure of the multidomain endoglucanase Cel9G from Clostridium cellulolyticum complexed with natural and synthetic cello-oligosaccharides
    • Mandelman, D., Belaich, A., Belaich, J. P., Aghajari, N., Driguez, H., and Haser, R. (2003) X-ray crystal structure of the multidomain endoglucanase Cel9G from Clostridium cellulolyticum complexed with natural and synthetic cello-oligosaccharides. J. Bacteriol. 185, 4127-4135
    • (2003) J. Bacteriol. , vol.185 , pp. 4127-4135
    • Mandelman, D.1    Belaich, A.2    Belaich, J.P.3    Aghajari, N.4    Driguez, H.5    Haser, R.6
  • 69
    • 84862869758 scopus 로고    scopus 로고
    • Agar degradation by microorganisms and agar-degrading enzymes
    • Chi, W. J., Chang, Y. K., and Hong, S. K. (2012) Agar degradation by microorganisms and agar-degrading enzymes. Appl. Microbiol. Biotechnol. 94, 917-930
    • (2012) Appl. Microbiol. Biotechnol. , vol.94 , pp. 917-930
    • Chi, W.J.1    Chang, Y.K.2    Hong, S.K.3
  • 70
    • 79953277907 scopus 로고    scopus 로고
    • Characterization of a Glycoside Hydrolase Family 50 Thermostable β-agarase AgrA from Marine Bacteria Agarivorans sp. AG17
    • Nikapitiya, C., Oh, C., Lee, Y., Lee, S., Whang, I., and Lee, J. (2010) Characterization of a Glycoside Hydrolase Family 50 Thermostable β-agarase AgrA from Marine Bacteria Agarivorans sp. AG17. Fish Aquat. Sci. 13, 36-48
    • (2010) Fish Aquat. Sci. , vol.13 , pp. 36-48
    • Nikapitiya, C.1    Oh, C.2    Lee, Y.3    Lee, S.4    Whang, I.5    Lee, J.6
  • 71
    • 84859268610 scopus 로고    scopus 로고
    • Gene cloning, expression and characterization of a neoagarotetraose- producing β-agarase from the marine bacterium Agarivorans sp. HZ105
    • Lin, B., Lu, G., Zheng, Y., Xie, W., Li, S., and Hu, Z. (2012) Gene cloning, expression and characterization of a neoagarotetraose-producing β-agarase from the marine bacterium Agarivorans sp. HZ105. World J. Microbiol. Biotechnol. 28, 1691-1697
    • (2012) World J. Microbiol. Biotechnol. , vol.28 , pp. 1691-1697
    • Lin, B.1    Lu, G.2    Zheng, Y.3    Xie, W.4    Li, S.5    Hu, Z.6
  • 73
    • 17144381631 scopus 로고    scopus 로고
    • High-level expression of a neoagarobiose-producing β-agarase gene from Agarivorans sp. JAMB-A. 11 in Bacillus subtilis and enzymic properties of the recombinant enzyme
    • Ohta, Y., Hatada, Y., Ito, S., and Horikoshi, K. (2005) High-level expression of a neoagarobiose-producing β-agarase gene from Agarivorans sp. JAMB-A11 in Bacillus subtilis and enzymic properties of the recombinant enzyme. Biotechnol. Appl. Biochem. 41, 183-191
    • (2005) Biotechnol. Appl. Biochem. , vol.41 , pp. 183-191
    • Ohta, Y.1    Hatada, Y.2    Ito, S.3    Horikoshi, K.4
  • 74
    • 0032914286 scopus 로고    scopus 로고
    • Purification and characterization of a novel β-agarase from an alkalophilic bacterium, Alteromonas sp. E-1
    • Kirimura, K., Masuda, N., Iwasaki, Y., Nakagawa, H., Kobayashi, R., and Usami, S. (1999) Purification and characterization of a novel β-agarase from an alkalophilic bacterium, Alteromonas sp. E-1. J. Biosci. Bioeng. 87, 436-441
    • (1999) J. Biosci. Bioeng. , vol.87 , pp. 436-441
    • Kirimura, K.1    Masuda, N.2    Iwasaki, Y.3    Nakagawa, H.4    Kobayashi, R.5    Usami, S.6
  • 75
    • 0027430309 scopus 로고
    • Cloning and sequencing of agaA, a unique agarase 0107 gene from a marine bacterium, Vibrio sp strain JT0107
    • Sugano, Y., Matsumoto, T., Kodama, H., and Noma, M. (1993) Cloning and sequencing of agaA, a unique agarase 0107 gene from a marine bacterium, Vibrio sp. strain JT0107. Appl. Environ. Microbiol. 59, 3750-3756
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 3750-3756
    • Sugano, Y.1    Matsumoto, T.2    Kodama, H.3    Noma, M.4
  • 76
    • 0028242452 scopus 로고
    • Sequence analysis of the agaB gene encoding a new β-agarase from Vibrio sp strain JT0107
    • Sugano, Y., Matsumoto, T., and Noma, M. (1994) Sequence analysis of the agaB gene encoding a new β-agarase from Vibrio sp. strain JT0107. Biochim. Biophys. Acta 1218, 105-108
    • (1994) Biochim. Biophys. Acta , vol.1218 , pp. 105-108
    • Sugano, Y.1    Matsumoto, T.2    Noma, M.3


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