메뉴 건너뛰기




Volumn 20, Issue 10, 2013, Pages 6851-6862

The quantitative real-time PCR applications in the monitoring of marine harmful algal bloom (HAB) species

Author keywords

Copy number; Fluorescent probes; HAB species; Primers; qrt PCR; Ribosomal genes; SYBR Green; TaqMan

Indexed keywords

MARINE TOXIN; SAXITOXIN; SEA WATER;

EID: 84884702905     PISSN: 09441344     EISSN: 16147499     Source Type: Journal    
DOI: 10.1007/s11356-012-1377-z     Document Type: Article
Times cited : (91)

References (75)
  • 2
    • 30744445696 scopus 로고    scopus 로고
    • International accreditation of sandwich hybridisation assay format DNA probes for micro-algae
    • Ayers K, Rhodes LL, Tyrrell J, Gladstone M, Scholin C (2005) International accreditation of sandwich hybridisation assay format DNA probes for micro-algae. New Zeal J Mar Fresh Res 39: 1225-1231.
    • (2005) New Zeal J Mar Fresh Res , vol.39 , pp. 1225-1231
    • Ayers, K.1    Rhodes, L.L.2    Tyrrell, J.3    Gladstone, M.4    Scholin, C.5
  • 3
    • 0031936014 scopus 로고    scopus 로고
    • Ribosomal external and internal transcribed spacers: combined use in the phylogenetic analysis of Medicago (Leguminosae)
    • Bena G, Jubier MF, Olivieri I, Lejeune B (1998) Ribosomal external and internal transcribed spacers: combined use in the phylogenetic analysis of Medicago (Leguminosae). J Mol Evol 46: 299-306.
    • (1998) J Mol Evol , vol.46 , pp. 299-306
    • Bena, G.1    Jubier, M.F.2    Olivieri, I.3    Lejeune, B.4
  • 6
    • 4143123572 scopus 로고    scopus 로고
    • Detection and quantification of the red tide dinoflagellate Karenia brevis by real-time nucleic acid sequence-based amplification
    • Casper ET, Paul JH, Smith MC, Gray M (2004) Detection and quantification of the red tide dinoflagellate Karenia brevis by real-time nucleic acid sequence-based amplification. Appl Environ Microbiol 70: 4727-4732.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 4727-4732
    • Casper, E.T.1    Paul, J.H.2    Smith, M.C.3    Gray, M.4
  • 7
    • 77955834073 scopus 로고    scopus 로고
    • Evaluation of real-time PCR methods for quantification of Acanthamoeba in anthropogenic water and biofilms
    • Chang CW, Wu YC, Ming KW (2010) Evaluation of real-time PCR methods for quantification of Acanthamoeba in anthropogenic water and biofilms. J Appl Microbiol 109: 799-807.
    • (2010) J Appl Microbiol , vol.109 , pp. 799-807
    • Chang, C.W.1    Wu, Y.C.2    Ming, K.W.3
  • 8
    • 33644865858 scopus 로고    scopus 로고
    • Improved quantitative real-time PCR assays for enumeration of harmful algal species in field samples using an exogenous DNA reference standard
    • Coyne K, Handy SH, Demir E, Whereat EB, Hutchins DA, Portune KJ, Doblin MA, Craig Cary S (2005) Improved quantitative real-time PCR assays for enumeration of harmful algal species in field samples using an exogenous DNA reference standard. Limnol Oceanogr Meth 3: 381-391.
    • (2005) Limnol Oceanogr Meth , vol.3 , pp. 381-391
    • Coyne, K.1    Handy, S.H.2    Demir, E.3    Whereat, E.B.4    Hutchins, D.A.5    Portune, K.J.6    Doblin, M.A.7    Craig Cary, S.8
  • 9
    • 33748939919 scopus 로고    scopus 로고
    • Using quantitative PCR to determine the distribution of a semicryptic benthic diatom, Navicula phyllepta (Bacillariophyceae)
    • Créach V, Ernst A, Sabbe K, Vanelslander B, Vyverman W, Stal LJ (2006) Using quantitative PCR to determine the distribution of a semicryptic benthic diatom, Navicula phyllepta (Bacillariophyceae). J Phycol 42: 1142-1154.
    • (2006) J Phycol , vol.42 , pp. 1142-1154
    • Créach, V.1    Ernst, A.2    Sabbe, K.3    Vanelslander, B.4    Vyverman, W.5    Stal, L.J.6
  • 10
    • 82455210797 scopus 로고    scopus 로고
    • Detection of the toxic marine diatom Pseudo-nitzschia multiseries using the RuBisCO small subunit (rbcS) gene in two real-time RNA amplification formats
    • Delaney JA, Ulrich RM, Paul JH (2011) Detection of the toxic marine diatom Pseudo-nitzschia multiseries using the RuBisCO small subunit (rbcS) gene in two real-time RNA amplification formats. Harmful Algae 11: 54-64.
    • (2011) Harmful Algae , vol.11 , pp. 54-64
    • Delaney, J.A.1    Ulrich, R.M.2    Paul, J.H.3
  • 11
    • 79953029030 scopus 로고    scopus 로고
    • The ALGADEC device: a semi-automated rRNA biosensor for the detection of toxic algae
    • Diercks S, Metfies K, Jéckel S, Medlin LK (2011) The ALGADEC device: a semi-automated rRNA biosensor for the detection of toxic algae. Harmful Algae 10: 395-401.
    • (2011) Harmful Algae , vol.10 , pp. 395-401
    • Diercks, S.1    Metfies, K.2    Jéckel, S.3    Medlin, L.K.4
  • 12
    • 33644852180 scopus 로고    scopus 로고
    • Molecular quantification of toxic Alexandrium fundyense in the Gulf of Maine using real-time PCR
    • Dyhrman ST, Erdner D, Du JL, Galac M, Anderson DM (2006) Molecular quantification of toxic Alexandrium fundyense in the Gulf of Maine using real-time PCR. Harmful Algae 5: 242-250.
    • (2006) Harmful Algae , vol.5 , pp. 242-250
    • Dyhrman, S.T.1    Erdner, D.2    Du, J.L.3    Galac, M.4    Anderson, D.M.5
  • 13
    • 77249093944 scopus 로고    scopus 로고
    • A quantitative real-time PCR assay for the identification and enumeration of Alexandrium cysts in marine sediments
    • Erdner DL, Percy L, Keafer B, Lewis J, Anderson DM (2010) A quantitative real-time PCR assay for the identification and enumeration of Alexandrium cysts in marine sediments. Deep Sea Res II 57: 279-287.
    • (2010) Deep Sea Res II , vol.57 , pp. 279-287
    • Erdner, D.L.1    Percy, L.2    Keafer, B.3    Lewis, J.4    Anderson, D.M.5
  • 14
    • 77952428448 scopus 로고    scopus 로고
    • Development and environmental application of a genus-specific quantitative PCR approach for Pseudo-nitzschia species
    • Fitzpatrick E, Caron D, Schnetzer A (2010) Development and environmental application of a genus-specific quantitative PCR approach for Pseudo-nitzschia species. Mar Biol 157: 1161-1169.
    • (2010) Mar Biol , vol.157 , pp. 1161-1169
    • Fitzpatrick, E.1    Caron, D.2    Schnetzer, A.3
  • 15
    • 34547795888 scopus 로고    scopus 로고
    • Development and application of two multiplex real-time PCR assays for the detection of Mycobacterium ulcerans in clinical and environmental samples
    • Fyfe JA, Lavender CJ, Johnson PD, Globan M, Sievers A, Azuolas J, Stinear TP (2007) Development and application of two multiplex real-time PCR assays for the detection of Mycobacterium ulcerans in clinical and environmental samples. Appl Environ Microbiol 73: 4733-4740.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 4733-4740
    • Fyfe, J.A.1    Lavender, C.J.2    Johnson, P.D.3    Globan, M.4    Sievers, A.5    Azuolas, J.6    Stinear, T.P.7
  • 16
    • 2342541675 scopus 로고    scopus 로고
    • Development of a real-time PCR assay for rapid detection and quantification of Alexandrium minutum (a dinoflagellate)
    • Galluzzi L, Penna A, Bertozzini E, Vila M, Garces E, Magnani M (2004) Development of a real-time PCR assay for rapid detection and quantification of Alexandrium minutum (a dinoflagellate). Appl Environ Microbiol 70: 1199-1206.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 1199-1206
    • Galluzzi, L.1    Penna, A.2    Bertozzini, E.3    Vila, M.4    Garces, E.5    Magnani, M.6
  • 17
    • 27644431885 scopus 로고    scopus 로고
    • Development of a qualitative PCR method for the Alexandrium (Dinophyceae) detection in contaminated mussels (Mytilus galloprovincialis)
    • Galluzzi L, Penna A, Bertozzini E, Vila M, Garcés E, Giacobbe MG, Prioli S, Magnani M (2005) Development of a qualitative PCR method for the Alexandrium (Dinophyceae) detection in contaminated mussels (Mytilus galloprovincialis). Harmful Algae 4: 973-983.
    • (2005) Harmful Algae , vol.4 , pp. 973-983
    • Galluzzi, L.1    Penna, A.2    Bertozzini, E.3    Vila, M.4    Garcés, E.5    Giacobbe, M.G.6    Prioli, S.7    Magnani, M.8
  • 19
    • 84884703051 scopus 로고    scopus 로고
    • Quantitative PCR for detection and enumeration of phytoplancton
    • In: Karlson B., Cusack C, Bresnan E, Intergovernmental Oceanographic Commission of UNESCO IOC Manuals and Guides, no 55 Paris
    • Galluzzi L, Penna A (2010) Quantitative PCR for detection and enumeration of phytoplancton. In: Karlson B., Cusack C, Bresnan E (eds) Microscopic and molecular methods for quantitative phytoplankton analysis. Intergovernmental Oceanographic Commission of UNESCO IOC Manuals and Guides, no 55 Paris, pp 95-102.
    • (2010) Microscopic and Molecular Methods For Quantitative Phytoplankton Analysis , pp. 95-102
    • Galluzzi, L.1    Penna, A.2
  • 20
    • 77349101355 scopus 로고    scopus 로고
    • Analysis of rRNA gene content in the Mediterranean dinoflagellate Alexandrium catenella and Alexandrium taylori: implications for the quantitative real-time PCR-based monitoring methods
    • Galluzzi L, Bertozzini E, Penna A, Perini F, Garcés E, Magnani M (2010) Analysis of rRNA gene content in the Mediterranean dinoflagellate Alexandrium catenella and Alexandrium taylori: implications for the quantitative real-time PCR-based monitoring methods. J Appl Phycol 22: 1-9.
    • (2010) J Appl Phycol , vol.22 , pp. 1-9
    • Galluzzi, L.1    Bertozzini, E.2    Penna, A.3    Perini, F.4    Garcés, E.5    Magnani, M.6
  • 21
    • 2942724505 scopus 로고    scopus 로고
    • Relationship between vegetative cells and cyst production during Alexandrium minutum bloom in Arenys de Mar harbour (NW Mediterranean)
    • Garcés E, Bravo I, Vila M, Figueroa RI, Maso M, Sampedro N (2004) Relationship between vegetative cells and cyst production during Alexandrium minutum bloom in Arenys de Mar harbour (NW Mediterranean). J Plank Res 26: 637-645.
    • (2004) J Plank Res , vol.26 , pp. 637-645
    • Garcés, E.1    Bravo, I.2    Vila, M.3    Figueroa, R.I.4    Maso, M.5    Sampedro, N.6
  • 22
    • 83155163695 scopus 로고    scopus 로고
    • Examination of the seasonal dynamics of the toxic dinoflagellate Alexandrium catenella at Redondo Beach, California, by quantitative PCR
    • Garneau M, Schnetzer A, Countway PD, Jones AC, Seubert EL, Caron DA (2011) Examination of the seasonal dynamics of the toxic dinoflagellate Alexandrium catenella at Redondo Beach, California, by quantitative PCR. Appl Environ Microbiol 77: 7669-7680.
    • (2011) Appl Environ Microbiol , vol.77 , pp. 7669-7680
    • Garneau, M.1    Schnetzer, A.2    Countway, P.D.3    Jones, A.C.4    Seubert, E.L.5    Caron, D.A.6
  • 23
    • 84860128752 scopus 로고    scopus 로고
    • The role of eutrophication in the global proliferation of harmful algal blooms: new perspectives and new approaches
    • Glibert PM, Seitzinger S, Heil CA, Burkholder JM, Parrow MW, Codispoti LA, Kelly V (2005) The role of eutrophication in the global proliferation of harmful algal blooms: new perspectives and new approaches. Oceanogr 18: 198-209.
    • (2005) Oceanogr , vol.18 , pp. 198-209
    • Glibert, P.M.1    Seitzinger, S.2    Heil, C.A.3    Burkholder, J.M.4    Parrow, M.W.5    Codispoti, L.A.6    Kelly, V.7
  • 28
    • 0027010116 scopus 로고
    • Harmful algal blooms in the Australian region
    • Hallegraeff GM (1992) Harmful algal blooms in the Australian region. Mar Pollut Bull 25: 186-190.
    • (1992) Mar Pollut Bull , vol.25 , pp. 186-190
    • Hallegraeff, G.M.1
  • 29
    • 77952474069 scopus 로고    scopus 로고
    • Ocean climate change, phytoplankton community responses, and harmful algal blooms: a formidable predictive challenge
    • Hallegraeff GM (2010) Ocean climate change, phytoplankton community responses, and harmful algal blooms: a formidable predictive challenge. J Phycol 46: 220-235.
    • (2010) J Phycol , vol.46 , pp. 220-235
    • Hallegraeff, G.M.1
  • 30
    • 33748711816 scopus 로고    scopus 로고
    • Simultaneous enumeration of multiple raphidophyte species by quantitative real-time PCR: capabilities and limitations
    • Handy SM, Hutchins DA, Cary SC, Coyne KJ (2006) Simultaneous enumeration of multiple raphidophyte species by quantitative real-time PCR: capabilities and limitations. Limnol Oceanogr Meth 4: 193-204.
    • (2006) Limnol Oceanogr Meth , vol.4 , pp. 193-204
    • Handy, S.M.1    Hutchins, D.A.2    Cary, S.C.3    Coyne, K.J.4
  • 31
    • 27644593262 scopus 로고    scopus 로고
    • Species-specific detection and quantification of toxic marine dinoflagellates Alexandrium tamarense and A. catenella by real-time PCR assay
    • Hosoi-Tanabe S, Sako Y (2005) Species-specific detection and quantification of toxic marine dinoflagellates Alexandrium tamarense and A. catenella by real-time PCR assay. Mar Biotech 7: 506-514.
    • (2005) Mar Biotech , vol.7 , pp. 506-514
    • Hosoi-Tanabe, S.1    Sako, Y.2
  • 32
    • 84859423168 scopus 로고    scopus 로고
    • Quantitative real-time polymerase chain reaction for Cochlodinium fulvescens (Dinophyceae), a harmful dinoflagellate from California coastal waters
    • Howard MDA, Jones AC, Schnetzer A, Countway PD, Tomas CR, Kudela RM, Hayashi K, Chia P, Caron DA (2012) Quantitative real-time polymerase chain reaction for Cochlodinium fulvescens (Dinophyceae), a harmful dinoflagellate from California coastal waters. J Phycol 48: 384-393.
    • (2012) J Phycol , vol.48 , pp. 384-393
    • Howard, M.D.A.1    Jones, A.C.2    Schnetzer, A.3    Countway, P.D.4    Tomas, C.R.5    Kudela, R.M.6    Hayashi, K.7    Chia, P.8    Caron, D.A.9
  • 33
    • 58549110817 scopus 로고    scopus 로고
    • Presence of Alexandrium catenella and paralytic shellfish toxins in finfish, shellfish and rock crabs in Monterey Bay, California USA
    • Jester RJK, Baugh A, Lefebvre KA (2009) Presence of Alexandrium catenella and paralytic shellfish toxins in finfish, shellfish and rock crabs in Monterey Bay, California USA. Mar Biol 156: 493-504.
    • (2009) Mar Biol , vol.156 , pp. 493-504
    • Jester, R.J.K.1    Baugh, A.2    Lefebvre, K.A.3
  • 34
    • 27944466811 scopus 로고    scopus 로고
    • Development of a quantification assay for the cysts of the toxic dinoflagellate Alexandrium tamarense using real-time polymerase chain reaction
    • Kamikawa R, Nagai S, Itakura S, Sako Y (2005) Development of a quantification assay for the cysts of the toxic dinoflagellate Alexandrium tamarense using real-time polymerase chain reaction. Fish Sci 71: 987-991.
    • (2005) Fish Sci , vol.71 , pp. 987-991
    • Kamikawa, R.1    Nagai, S.2    Itakura, S.3    Sako, Y.4
  • 36
    • 33947148224 scopus 로고    scopus 로고
    • Application of real-time PCR assay for detection and quantification of Alexandrium tamarense and Alexandrium catenella cysts from marine sediments
    • Kamikawa R, Nagai S, Hosoi-Tanabe S, Itakura S, Yamaguchi M, Uchida Y, Baba T, Sako Y (2007) Application of real-time PCR assay for detection and quantification of Alexandrium tamarense and Alexandrium catenella cysts from marine sediments. Harmful Algae 6: 413-420.
    • (2007) Harmful Algae , vol.6 , pp. 413-420
    • Kamikawa, R.1    Nagai, S.2    Hosoi-Tanabe, S.3    Itakura, S.4    Yamaguchi, M.5    Uchida, Y.6    Baba, T.7    Sako, Y.8
  • 38
    • 46949108154 scopus 로고    scopus 로고
    • Biosynthetic intermediate analysis and functional homology reveal a saxitoxin gene cluster in cyanobacteria
    • Kellmann R, Mihali TK, Jeon YJ, Pickford R, Pomati F, Neilan B (2008) Biosynthetic intermediate analysis and functional homology reveal a saxitoxin gene cluster in cyanobacteria. Appl Environ Microbiol 74: 4044-4053.
    • (2008) Appl Environ Microbiol , vol.74 , pp. 4044-4053
    • Kellmann, R.1    Mihali, T.K.2    Jeon, Y.J.3    Pickford, R.4    Pomati, F.5    Neilan, B.6
  • 41
    • 36849043022 scopus 로고    scopus 로고
    • Species boundaries and global biogeography of the Alexandrium tamarense complex (Dinophyceae)
    • Lilly E, Halanych K, Anderson D (2007) Species boundaries and global biogeography of the Alexandrium tamarense complex (Dinophyceae). J Phycol 43: 1329-1338.
    • (2007) J Phycol , vol.43 , pp. 1329-1338
    • Lilly, E.1    Halanych, K.2    Anderson, D.3
  • 42
    • 33745712218 scopus 로고    scopus 로고
    • Low abundance distribution of Pfiesteria piscicida in Pacific and Western Atlantic as detected by mtDNA-18S rDNA real-time polymerase chain reaction
    • Lin S, Zhang H, Dubois A (2006) Low abundance distribution of Pfiesteria piscicida in Pacific and Western Atlantic as detected by mtDNA-18S rDNA real-time polymerase chain reaction. J Plank Res 28: 667-681.
    • (2006) J Plank Res , vol.28 , pp. 667-681
    • Lin, S.1    Zhang, H.2    Dubois, A.3
  • 43
    • 0028834086 scopus 로고
    • Oligonucleotides with fluorescent dyes at opposite ends provide a quenched probe system useful for detecting PCR product and nucleic acid hybridization
    • Livak KJ, Flood SJ, Marmaro J, Giusti W, Deetz K (1995) Oligonucleotides with fluorescent dyes at opposite ends provide a quenched probe system useful for detecting PCR product and nucleic acid hybridization. PCR Meth Appl 4: 357-362.
    • (1995) PCR Meth Appl , vol.4 , pp. 357-362
    • Livak, K.J.1    Flood, S.J.2    Marmaro, J.3    Giusti, W.4    Deetz, K.5
  • 44
    • 84755160802 scopus 로고    scopus 로고
    • Multiplex PCR methods for the species-specific detection and quantification of Prymnesium parvum (Haptophyta)
    • Manning SR, La Claire JW II (2010) Multiplex PCR methods for the species-specific detection and quantification of Prymnesium parvum (Haptophyta). J Appl Phycol 22: 587-597.
    • (2010) J Appl Phycol , vol.22 , pp. 587-597
    • Manning, S.R.1    La Claire II, J.W.2
  • 45
    • 84884700327 scopus 로고    scopus 로고
    • Sandwich hybridization
    • In: Karlson B., Cusack C, Bresnan E, Intergovernmental Oceanographic Commission of UNESCO IOC Manuals and Guides, no 55 Paris
    • Marin III R, Scholin C. (2010) Sandwich hybridization. In: Karlson B., Cusack C, Bresnan E (eds) Microscopic and molecular methods for quantitative phytoplankton analysis. Intergovernmental Oceanographic Commission of UNESCO IOC Manuals and Guides, no 55 Paris, pp 87-94.
    • (2010) Microscopic and Molecular Methods For Quantitative Phytoplankton Analysis , pp. 87-94
    • Marin, I.I.I.R.1    Scholin, C.2
  • 46
    • 80054703291 scopus 로고    scopus 로고
    • Use of qPCR for the study of hepatotoxic cyanobacteria population dynamics
    • Martins A, Vasconcelos V (2011) Use of qPCR for the study of hepatotoxic cyanobacteria population dynamics. Arch Microbiol 193: 615-27.
    • (2011) Arch Microbiol , vol.193 , pp. 615-627
    • Martins, A.1    Vasconcelos, V.2
  • 48
    • 8744313964 scopus 로고    scopus 로고
    • Characterization of the nodularin synthetase gene cluster and proposed theory of the evolution of cyanobacterial hepatotoxins
    • Moffitt MC, Neilan BA (2004) Characterization of the nodularin synthetase gene cluster and proposed theory of the evolution of cyanobacterial hepatotoxins. Appl Environ Microbiol 70: 6353-6362.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 6353-6362
    • Moffitt, M.C.1    Neilan, B.A.2
  • 49
    • 58249130588 scopus 로고    scopus 로고
    • Recent trends in paralytic shellfish toxins in Puget Sound, relationships to climate, and capacity for prediction of toxic events
    • Moore SK, Mantua NJ, Hickey BM, Trainer VL (2009) Recent trends in paralytic shellfish toxins in Puget Sound, relationships to climate, and capacity for prediction of toxic events. Harmful Algae 8: 463-477.
    • (2009) Harmful Algae , vol.8 , pp. 463-477
    • Moore, S.K.1    Mantua, N.J.2    Hickey, B.M.3    Trainer, V.L.4
  • 50
    • 33748447166 scopus 로고    scopus 로고
    • Use of quantitative real-time PCR to investigate the dynamics of the red tide dinoflagellate Lingulodinium polyedrum
    • Moorthi S, Countway P, Stauffer B, Caron D (2006) Use of quantitative real-time PCR to investigate the dynamics of the red tide dinoflagellate Lingulodinium polyedrum. Microb Ecol 52: 136-150.
    • (2006) Microb Ecol , vol.52 , pp. 136-150
    • Moorthi, S.1    Countway, P.2    Stauffer, B.3    Caron, D.4
  • 51
    • 67649400366 scopus 로고    scopus 로고
    • Differential accumulation of paralytic shellfish toxins from Alexandrium minutum in the pearl oyster, Pinctada imbricata
    • Murray SA, O'Connor WA, Alvin A, Mihali TK, Kalaitzis J, Neilan BA (2009) Differential accumulation of paralytic shellfish toxins from Alexandrium minutum in the pearl oyster, Pinctada imbricata. Toxicon 54: 217-223.
    • (2009) Toxicon , vol.54 , pp. 217-223
    • Murray, S.A.1    O'Connor, W.A.2    Alvin, A.3    Mihali, T.K.4    Kalaitzis, J.5    Neilan, B.A.6
  • 53
    • 34247605605 scopus 로고    scopus 로고
    • Development of a real-time pcr probe for quantification of the heterotrophic dinoflagellate Cryptoperidiniopsis brodyi (Dinophyceae) in environmental samples
    • Park TG, de Salas MF, Bolch CJS, Hallegraeff GM (2007) Development of a real-time pcr probe for quantification of the heterotrophic dinoflagellate Cryptoperidiniopsis brodyi (Dinophyceae) in environmental samples. Appl Environ Microbiol 73: 2552-2560.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 2552-2560
    • Park, T.G.1    de Salas, M.F.2    Bolch, C.J.S.3    Hallegraeff, G.M.4
  • 54
    • 58249123406 scopus 로고    scopus 로고
    • Identification of the dinoflagellate community during Cochlodinium polykrikoides (Dinophyceae) blooms using amplified rDNA melting curve analysis and real-time PCR probes
    • Park TG, Park G-H, Park Y-T, Kang Y-S, Bae H-M, Kim C-H, Jeong H-J, Lee Y (2009) Identification of the dinoflagellate community during Cochlodinium polykrikoides (Dinophyceae) blooms using amplified rDNA melting curve analysis and real-time PCR probes. Harmful Algae 8: 430-440.
    • (2009) Harmful Algae , vol.8 , pp. 430-440
    • Park, T.G.1    Park, G.-H.2    Park, Y.-T.3    Kang, Y.-S.4    Bae, H.-M.5    Kim, C.-H.6    Jeong, H.-J.7    Lee, Y.8
  • 56
    • 79952303799 scopus 로고    scopus 로고
    • New approach using the real-time PCR method for estimation of the toxic marine dinoflagellate Ostreopsis cf. ovata in marine environment
    • Perini F, Casabianca A, Battocchi C, Accoroni S, Totti C, Penna A (2011) New approach using the real-time PCR method for estimation of the toxic marine dinoflagellate Ostreopsis cf. ovata in marine environment. PLoS One 6: e17699.
    • (2011) PLoS One , vol.6
    • Perini, F.1    Casabianca, A.2    Battocchi, C.3    Accoroni, S.4    Totti, C.5    Penna, A.6
  • 57
    • 2542462652 scopus 로고    scopus 로고
    • The use of quantitative polymerase chain reaction for the detection and enumeration of the harmful alga Aureococcus anophagefferens in environmental samples along the United States East Coast
    • Popels LC, Cary SC, Hutchins DA, Forbes R, Pustizzi F, Gobler CJ, Coyne KJ (2003) The use of quantitative polymerase chain reaction for the detection and enumeration of the harmful alga Aureococcus anophagefferens in environmental samples along the United States East Coast. Limnol Oceanogr Meth 1: 92-102.
    • (2003) Limnol Oceanogr Meth , vol.1 , pp. 92-102
    • Popels, L.C.1    Cary, S.C.2    Hutchins, D.A.3    Forbes, R.4    Pustizzi, F.5    Gobler, C.J.6    Coyne, K.J.7
  • 58
    • 34250658870 scopus 로고    scopus 로고
    • High-resolution DNA melting analysis for simple and efficient molecular diagnostics
    • Reed GH, Kent JO, Wittwer CT (2007) High-resolution DNA melting analysis for simple and efficient molecular diagnostics. Pharmacogenomics 8: 597-608.
    • (2007) Pharmacogenomics , vol.8 , pp. 597-608
    • Reed, G.H.1    Kent, J.O.2    Wittwer, C.T.3
  • 61
    • 33746497224 scopus 로고    scopus 로고
    • Physiology, ecology, and toxic properties of marine cyanobacteria blooms
    • Sellner KG (1997) Physiology, ecology, and toxic properties of marine cyanobacteria blooms. Limnol Oceanogr 42: 1089-1104.
    • (1997) Limnol Oceanogr , vol.42 , pp. 1089-1104
    • Sellner, K.G.1
  • 62
    • 0033378906 scopus 로고    scopus 로고
    • DNA probes and a receptor-binding assay for detection of Pseudo-nitzschia (Bacillariophyceae) species and domoic acid activity in cultured and natural samples
    • Scholin CA, Marin R, Doucette GJ, Powell CL, Haydock P, Howard J, Ray J (1999) DNA probes and a receptor-binding assay for detection of Pseudo-nitzschia (Bacillariophyceae) species and domoic acid activity in cultured and natural samples. J Phycol 35: 1356-1367.
    • (1999) J Phycol , vol.35 , pp. 1356-1367
    • Scholin, C.A.1    Marin, R.2    Doucette, G.J.3    Powell, C.L.4    Haydock, P.5    Howard, J.6    Ray, J.7
  • 64
    • 66349132761 scopus 로고    scopus 로고
    • Assessing high-resolution melt curve analysis for accurate detection of gene variants in complex DNA fragments
    • Tindall EA, Petersen DC, Woodbridge P, Schipany K, Hayes VM (2009) Assessing high-resolution melt curve analysis for accurate detection of gene variants in complex DNA fragments. Hum Mutat 30: 876-83.
    • (2009) Hum Mutat , vol.30 , pp. 876-883
    • Tindall, E.A.1    Petersen, D.C.2    Woodbridge, P.3    Schipany, K.4    Hayes, V.M.5
  • 65
    • 33745698211 scopus 로고    scopus 로고
    • Automated detection and enumeration for toxic algae by solid-phase cytometry and the introduction of a new probe for Prymnesium parvum (Haptophyta: Prymnesiophyceae)
    • Töbe K, Eller G, Medlin LK (2006) Automated detection and enumeration for toxic algae by solid-phase cytometry and the introduction of a new probe for Prymnesium parvum (Haptophyta: Prymnesiophyceae). J Plank Res 28: 643-657.
    • (2006) J Plank Res , vol.28 , pp. 643-657
    • Töbe, K.1    Eller, G.2    Medlin, L.K.3
  • 66
    • 84871952860 scopus 로고    scopus 로고
    • Detecting intact algal cells with whole cell hybridisation assays, microscopic and molecular methods for quantitative phytoplankton analysis
    • In: Karlson B., Cusack C, Bresnan E, Intergovernmental Oceanographic Commission of UNESCO IOC Manuals and Guides, no 55 Paris
    • Töbe K, Kullis D, Gladstone M, Anderson D, Medlin LK (2010) Detecting intact algal cells with whole cell hybridisation assays, microscopic and molecular methods for quantitative phytoplankton analysis. In: Karlson B., Cusack C, Bresnan E (eds) Microscopic and molecular methods for quantitative phytoplankton analysis. Intergovernmental Oceanographic Commission of UNESCO IOC Manuals and Guides, no 55 Paris, pp 55-66.
    • (2010) Microscopic and Molecular Methods For Quantitative Phytoplankton Analysis , pp. 55-66
    • Töbe, K.1    Kullis, D.2    Gladstone, M.3    Anderson, D.4    Medlin, L.K.5
  • 67
    • 58149125400 scopus 로고    scopus 로고
    • Evaluationof taxa-specific real-time PCR, whole-cell FISH and morpho taxonomy analyses for the detection and quantification of the toxic microalgae Alexandrium minutum (Dinophyceae), global clade ribotype
    • Touzet N, Keady E, Raine R, Maher M (2009) Evaluationof taxa-specific real-time PCR, whole-cell FISH and morpho taxonomy analyses for the detection and quantification of the toxic microalgae Alexandrium minutum (Dinophyceae), global clade ribotype. FEMS Microbiol Ecol 67: 329-341.
    • (2009) FEMS Microbiol Ecol , vol.67 , pp. 329-341
    • Touzet, N.1    Keady, E.2    Raine, R.3    Maher, M.4
  • 69
    • 70449529428 scopus 로고    scopus 로고
    • Detection and quantification of Karenia mikimotoi using real-time nucleic acid sequence-based amplification with internal control RNA (IC-NASBA)
    • Ulrich RM, Casper ET, Campbell L, Richardson B, Heil CA, Paul JH (2010) Detection and quantification of Karenia mikimotoi using real-time nucleic acid sequence-based amplification with internal control RNA (IC-NASBA). Harmful Algae 9: 116-122.
    • (2010) Harmful Algae , vol.9 , pp. 116-122
    • Ulrich, R.M.1    Casper, E.T.2    Campbell, L.3    Richardson, B.4    Heil, C.A.5    Paul, J.H.6
  • 71
    • 0030748867 scopus 로고    scopus 로고
    • Inhibition and facilitation of nucleic acid amplification
    • Wilson IG (1997) Inhibition and facilitation of nucleic acid amplification. Appl Environ Microbiol 63: 3741-3751.
    • (1997) Appl Environ Microbiol , vol.63 , pp. 3741-3751
    • Wilson, I.G.1
  • 72
    • 0029842646 scopus 로고    scopus 로고
    • Sequence data for two large-subunit rRNA genes from an Asian strain of Alexandrium catenella
    • Yeung PK, Kong KF, Wong FT, Wong JT (1996) Sequence data for two large-subunit rRNA genes from an Asian strain of Alexandrium catenella. Appl Environ Microbiol 62: 4199-4201.
    • (1996) Appl Environ Microbiol , vol.62 , pp. 4199-4201
    • Yeung, P.K.1    Kong, K.F.2    Wong, F.T.3    Wong, J.T.4
  • 73
    • 84860566370 scopus 로고    scopus 로고
    • Development of a rapid detection and quantification method of Karenia mikimotoi by real-time quantitative PCR
    • Yuan J, Mi T, Zhen Y, Yu Z (2012) Development of a rapid detection and quantification method of Karenia mikimotoi by real-time quantitative PCR. Harmful Algae 17: 83-91.
    • (2012) Harmful Algae , vol.17 , pp. 83-91
    • Yuan, J.1    Mi, T.2    Zhen, Y.3    Yu, Z.4
  • 74
    • 84857359532 scopus 로고    scopus 로고
    • Incorporating molecular tools into routine HAB monitoring programs: using qPCR to track invasive Prymnesium
    • Zamor RM, Glenn KL, Hambright KD (2012) Incorporating molecular tools into routine HAB monitoring programs: using qPCR to track invasive Prymnesium. Harmful Algae 15: 1-7.
    • (2012) Harmful Algae , vol.15 , pp. 1-7
    • Zamor, R.M.1    Glenn, K.L.2    Hambright, K.D.3
  • 75
    • 32044446476 scopus 로고    scopus 로고
    • Development of a cob-18S rRNA gene real-time PCR assay for quantifying Pfiesteria shumwayae in the natural environment
    • Zhang H, Lin S (2005) Development of a cob-18S rRNA gene real-time PCR assay for quantifying Pfiesteria shumwayae in the natural environment. App Environ Microbiol 71: 7053-7063.
    • (2005) App Environ Microbiol , vol.71 , pp. 7053-7063
    • Zhang, H.1    Lin, S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.