메뉴 건너뛰기




Volumn 73, Issue 8, 2007, Pages 2552-2560

Development of a real-time PCR Probe for quantification of the heterotrophic dinoflagellate Cryptoperidiniopsis brodyi (Dinophyceae) in environmental samples

Author keywords

[No Author keywords available]

Indexed keywords

BIOASSAY; CELLS; DNA;

EID: 34247605605     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.02389-06     Document Type: Article
Times cited : (46)

References (44)
  • 1
    • 8744247428 scopus 로고    scopus 로고
    • Real-time PCR detection and quantification of the protistan parasite Perkinsus marinus in environmental waters
    • Audemard, C., S. R. Kimberly, and E. M. Burreson. 2004. Real-time PCR detection and quantification of the protistan parasite Perkinsus marinus in environmental waters. Appl. Environ. Microbiol. 70:6611-6618.
    • (2004) Appl. Environ. Microbiol , vol.70 , pp. 6611-6618
    • Audemard, C.1    Kimberly, S.R.2    Burreson, E.M.3
  • 2
    • 0034934219 scopus 로고    scopus 로고
    • PCR protocol for genetic identification of dinoflagellates directly from single cysts and plankton cells
    • Bolch, C. J. S. 2001. PCR protocol for genetic identification of dinoflagellates directly from single cysts and plankton cells. Phycologia 40:162-168.
    • (2001) Phycologia , vol.40 , pp. 162-168
    • Bolch, C.J.S.1
  • 3
    • 0033760612 scopus 로고    scopus 로고
    • Development of real-time PCR assays for rapid detection of Pfiesteria piscicida and related dinoflagellates
    • Bowers, H. A., T. Tengs, H. B. Glasgow, J. M. Burkholder, P. A. Rublee, and D. W. Oldach. 2000. Development of real-time PCR assays for rapid detection of Pfiesteria piscicida and related dinoflagellates. Appl. Environ. Microbiol. 66:4641-4648.
    • (2000) Appl. Environ. Microbiol , vol.66 , pp. 4641-4648
    • Bowers, H.A.1    Tengs, T.2    Glasgow, H.B.3    Burkholder, J.M.4    Rublee, P.A.5    Oldach, D.W.6
  • 5
    • 5344280048 scopus 로고
    • Interactions of a toxic estuarine dinoflagellate with microbial predations and prey
    • Burkholder, J. M., and H. B. Glasgow. 1995. Interactions of a toxic estuarine dinoflagellate with microbial predations and prey. Arch. Protistenkd. 145:177-188.
    • (1995) Arch. Protistenkd , vol.145 , pp. 177-188
    • Burkholder, J.M.1    Glasgow, H.B.2
  • 6
    • 2642638790 scopus 로고    scopus 로고
    • Pfiesteria piscicida and other Pfiesteria-like dinoflagellates: Behavior, impacts, and environmental controls
    • Burkholder, J. M., and H. B. Glasgow. 1997. Pfiesteria piscicida and other Pfiesteria-like dinoflagellates: behavior, impacts, and environmental controls. Limnol. Oceanogr. 42:1052-1075.
    • (1997) Limnol. Oceanogr , vol.42 , pp. 1052-1075
    • Burkholder, J.M.1    Glasgow, H.B.2
  • 7
    • 0034860616 scopus 로고    scopus 로고
    • Overview and present status of the toxic Pfiesteria complex (Dinophyceae)
    • Burkholder, J. M., H. B. Glasgow, and N. Deamer-Melia. 2001. Overview and present status of the toxic Pfiesteria complex (Dinophyceae). Phycologia 40:186-214.
    • (2001) Phycologia , vol.40 , pp. 186-214
    • Burkholder, J.M.1    Glasgow, H.B.2    Deamer-Melia, N.3
  • 8
    • 0036060997 scopus 로고    scopus 로고
    • Rapid identification of marine algae (Raphidophyceae) using three-primer PCR amplification of nuclear internal transcribed spacer (ITS) regions from and archived material
    • Connell, L. M. 2001. Rapid identification of marine algae (Raphidophyceae) using three-primer PCR amplification of nuclear internal transcribed spacer (ITS) regions from and archived material. Phycologia 41:15-21.
    • (2001) Phycologia , vol.41 , pp. 15-21
    • Connell, L.M.1
  • 9
    • 0035908647 scopus 로고    scopus 로고
    • Assessing temporal and spatial variability in Pfiesteria piscicida distribution using molecular probing techniques
    • Coyne, K. J., D. A. Hutchins, C. E. Hare, and S. C. Cary. 2001. Assessing temporal and spatial variability in Pfiesteria piscicida distribution using molecular probing techniques. Aquat. Microb. Ecol. 24:275-285.
    • (2001) Aquat. Microb. Ecol , vol.24 , pp. 275-285
    • Coyne, K.J.1    Hutchins, D.A.2    Hare, C.E.3    Cary, S.C.4
  • 10
    • 0032145986 scopus 로고    scopus 로고
    • Simple and rapid method for direct extraction of microbial DNA from soil for PCR
    • Cullen, D. W., and P. R. Hirsch. 1998. Simple and rapid method for direct extraction of microbial DNA from soil for PCR. Soil Biol. Biochem. 30:983-993.
    • (1998) Soil Biol. Biochem , vol.30 , pp. 983-993
    • Cullen, D.W.1    Hirsch, P.R.2
  • 11
    • 2342541675 scopus 로고    scopus 로고
    • Development of a real-time PCR assay for rapid detection and quantification of Alexandrium minutum (a dinoflagellate)
    • Galluzzi, L., A. Penna, E. Bertozzini, M. Vila, E. Garcés, and M. Magnani. 2004. Development of a real-time PCR assay for rapid detection and quantification of Alexandrium minutum (a dinoflagellate). Appl. Environ. Microbiol. 70:1199-1206.
    • (2004) Appl. Environ. Microbiol , vol.70 , pp. 1199-1206
    • Galluzzi, L.1    Penna, A.2    Bertozzini, E.3    Vila, M.4    Garcés, E.5    Magnani, M.6
  • 12
    • 73049174685 scopus 로고
    • Studies of marine planktonic diatoms. I. Cyclotella nana Hustedt and Detonula confervacea cleve
    • Guillard, R. R. L., and J. H. Ryther. 1962. Studies of marine planktonic diatoms. I. Cyclotella nana Hustedt and Detonula confervacea cleve. Can. J. Microbiol. 8:229-239.
    • (1962) Can. J. Microbiol , vol.8 , pp. 229-239
    • Guillard, R.R.L.1    Ryther, J.H.2
  • 13
    • 0035407042 scopus 로고    scopus 로고
    • Comparison of different approaches to quantify Staphylococcus aureus cells by real-time PCR and application of this technique for examination of cheeses
    • Hein, I., A. Lehner, P. Rieck, K. Klein, E. Brandl, and M. Wagner. 2001. Comparison of different approaches to quantify Staphylococcus aureus cells by real-time PCR and application of this technique for examination of cheeses. Appl. Environ. Microbiol. 67:3122-3126.
    • (2001) Appl. Environ. Microbiol , vol.67 , pp. 3122-3126
    • Hein, I.1    Lehner, A.2    Rieck, P.3    Klein, K.4    Brandl, E.5    Wagner, M.6
  • 14
    • 0034849408 scopus 로고    scopus 로고
    • MrBayes: Bayesian inference of phytogeny
    • Huetsenbeck, J. P., and F. Ronquist. 2001. MrBayes: Bayesian inference of phytogeny. Bioinformatics 17:754-755.
    • (2001) Bioinformatics , vol.17 , pp. 754-755
    • Huetsenbeck, J.P.1    Ronquist, F.2
  • 15
    • 0027947067 scopus 로고
    • Growth and grazing rates of the heterotrophic dinoflagellates Protoperidinium spp. on red tide dinoflagellates
    • Jeong, H. J., and M. I. Latz. 1994. Growth and grazing rates of the heterotrophic dinoflagellates Protoperidinium spp. on red tide dinoflagellates. Mar. Ecol. Prog. Ser. 106:173-185.
    • (1994) Mar. Ecol. Prog. Ser , vol.106 , pp. 173-185
    • Jeong, H.J.1    Latz, M.I.2
  • 16
    • 27244435750 scopus 로고    scopus 로고
    • Stoeckeria algicida n. gen., n. sp. (Dinophyceae) from the coastal water off southern Korea: Morphology and small subunit ribosomal DNA gene sequence
    • Jeong, H. J., J. S. Kim, J. Y. Park, J. H. Kim, S. Kim, I. H. Lee, S. H. Lee, J. H. Ha, and W. H. Yih. 2005. Stoeckeria algicida n. gen., n. sp. (Dinophyceae) from the coastal water off southern Korea: morphology and small subunit ribosomal DNA gene sequence. J. Eukaryot. Microbiol. 52:382-390.
    • (2005) J. Eukaryot. Microbiol , vol.52 , pp. 382-390
    • Jeong, H.J.1    Kim, J.S.2    Park, J.Y.3    Kim, J.H.4    Kim, S.5    Lee, I.H.6    Lee, S.H.7    Ha, J.H.8    Yih, W.H.9
  • 17
    • 0038221311 scopus 로고    scopus 로고
    • Quantitative detection of methanotrophs in soil by novel pmoA-targeted real-time PCR assays
    • Kolb, S., C. Knief, S. Stubner, and R. Conrad. 2003. Quantitative detection of methanotrophs in soil by novel pmoA-targeted real-time PCR assays. Appl. Environ. Microbiol. 69:2423-2429.
    • (2003) Appl. Environ. Microbiol , vol.69 , pp. 2423-2429
    • Kolb, S.1    Knief, C.2    Stubner, S.3    Conrad, R.4
  • 18
  • 19
    • 33745712218 scopus 로고    scopus 로고
    • Wide distribution and low abundance of Pfiesteria piscicida as detected by mtDNA-18S rDNA real-time PCR
    • Lin, S., H. Zhang, and A. Dubois. 2006. Wide distribution and low abundance of Pfiesteria piscicida as detected by mtDNA-18S rDNA real-time PCR. J. Plankton Res. 28:667-681.
    • (2006) J. Plankton Res , vol.28 , pp. 667-681
    • Lin, S.1    Zhang, H.2    Dubois, A.3
  • 20
    • 0033369036 scopus 로고    scopus 로고
    • The phylogenetic relationship of Pfiesteria piscicida, cryptoperidiniopsoid sp., Amyloodinium ocellatum and a Pfiesteria-like dinoflagellate to other dinoflagellates and apicomplexans
    • Litaker, R. W., P. A. Tester, A. Colomi, M. G. Levy, and E. J. Noga. 1999. The phylogenetic relationship of Pfiesteria piscicida, cryptoperidiniopsoid sp., Amyloodinium ocellatum and a Pfiesteria-like dinoflagellate to other dinoflagellates and apicomplexans. J. Phycol. 35:1379-1389.
    • (1999) J. Phycol , vol.35 , pp. 1379-1389
    • Litaker, R.W.1    Tester, P.A.2    Colomi, A.3    Levy, M.G.4    Noga, E.J.5
  • 21
  • 23
    • 0000590323 scopus 로고    scopus 로고
    • Monitoring result for Pfiesteria piscicida and Pfiesteria-like organisms from Virginia waters in 1998
    • Marshall, H. G., D. Seaborn, and J. Wolny. 1999. Monitoring result for Pfiesteria piscicida and Pfiesteria-like organisms from Virginia waters in 1998. Virginia J. Sci. 50:287-298.
    • (1999) Virginia J. Sci , vol.50 , pp. 287-298
    • Marshall, H.G.1    Seaborn, D.2    Wolny, J.3
  • 25
    • 0037329585 scopus 로고    scopus 로고
    • An improved stripping technique for lightly armored dinoflagellates
    • Mason, P. L., W. K. Vogelbein, L. W. Haas, and J. D. Shields. 2003. An improved stripping technique for lightly armored dinoflagellates. J. Phycol. 39:253-258.
    • (2003) J. Phycol , vol.39 , pp. 253-258
    • Mason, P.L.1    Vogelbein, W.K.2    Haas, L.W.3    Shields, J.D.4
  • 26
    • 0033784856 scopus 로고    scopus 로고
    • Prey size spectra and food preferences in thecate heterotrophic dinoflagellates
    • Naustvoll, L. J. 2000. Prey size spectra and food preferences in thecate heterotrophic dinoflagellates. Phycologia 39:187-198.
    • (2000) Phycologia , vol.39 , pp. 187-198
    • Naustvoll, L.J.1
  • 27
    • 34548024372 scopus 로고    scopus 로고
    • Morphological and molecular genetic characterization of Cryptoperidiniopsis brodyi (Dinophyceae) from Australia-wide isolates
    • in press
    • Park, T. G., C. J. S. Bolch, and G. M. Hallegraeff. Morphological and molecular genetic characterization of Cryptoperidiniopsis brodyi (Dinophyceae) from Australia-wide isolates. Harmful Algae, in press.
    • Harmful Algae
    • Park, T.G.1    Bolch, C.J.S.2    Hallegraeff, G.M.3
  • 28
    • 0041402648 scopus 로고    scopus 로고
    • Estuarine heterotrophic Cryptoperidiniopsoids (Dinophyceae): Life cycle and culture studies
    • Parrow, M. W., and J. M. Burkholder. 2003. Estuarine heterotrophic Cryptoperidiniopsoids (Dinophyceae): life cycle and culture studies. J. Phycol. 39:678-696.
    • (2003) J. Phycol , vol.39 , pp. 678-696
    • Parrow, M.W.1    Burkholder, J.M.2
  • 29
    • 0033034574 scopus 로고    scopus 로고
    • Identification of Alexandrium (Dinophyceae) species using PCR and rDNA-targeted probes
    • Penna, A., and M. Magnani. 1999. Identification of Alexandrium (Dinophyceae) species using PCR and rDNA-targeted probes. J. Phycol. 35:615-621.
    • (1999) J. Phycol , vol.35 , pp. 615-621
    • Penna, A.1    Magnani, M.2
  • 31
    • 33646851889 scopus 로고    scopus 로고
    • Geographic distribution of Pfiesteria spp. (Pfiesteriaceae) in Tasman Bay and Canterbury, New Zealand (2002-03)
    • Rhodes, L. L., J. E. Adamson, P. A. Rublee, and E. Schaefer. 2006. Geographic distribution of Pfiesteria spp. (Pfiesteriaceae) in Tasman Bay and Canterbury, New Zealand (2002-03). N. Z. J. Mar. Freshw. Res. 40:211-220.
    • (2006) N. Z. J. Mar. Freshw. Res , vol.40 , pp. 211-220
    • Rhodes, L.L.1    Adamson, J.E.2    Rublee, P.A.3    Schaefer, E.4
  • 33
    • 34247610582 scopus 로고    scopus 로고
    • Rublee, P. A., C. Allen, E. Schaefer, L. Rhodes, J. Adamson, C. Lapworth, J. Burkholder, and H. Glasgow. 2004. Global distribution of toxic Pfiesteria complex species detected by PCR assay, p. 320-322. In K. A. Steidinger, J. H. Landsberg, C. R. Tomas, and G. A. Vargo (ed.), Harmful algae, 2002. Florida Fish And Wildlife Conservation Commission, Florida Institute of Oceanography and Intergovernmental Oceanographic Commission of UNESCO, St. Petersburg, FL.
    • Rublee, P. A., C. Allen, E. Schaefer, L. Rhodes, J. Adamson, C. Lapworth, J. Burkholder, and H. Glasgow. 2004. Global distribution of toxic Pfiesteria complex species detected by PCR assay, p. 320-322. In K. A. Steidinger, J. H. Landsberg, C. R. Tomas, and G. A. Vargo (ed.), Harmful algae, 2002. Florida Fish And Wildlife Conservation Commission, Florida Institute of Oceanography and Intergovernmental Oceanographic Commission of UNESCO, St. Petersburg, FL.
  • 34
    • 21844453446 scopus 로고    scopus 로고
    • Detection of the dinozoans Pfiesteria piscicida and P. shumwayae: A review of detection methods and geographic distribution
    • Rublee, P. A., D. L. Reminfton, E. F. Schaefer, and M. M. Marshall. 2005. Detection of the dinozoans Pfiesteria piscicida and P. shumwayae: a review of detection methods and geographic distribution. J. Eukaryot. Microbiol. 52:83-89.
    • (2005) J. Eukaryot. Microbiol , vol.52 , pp. 83-89
    • Rublee, P.A.1    Reminfton, D.L.2    Schaefer, E.F.3    Marshall, M.M.4
  • 35
    • 33746296843 scopus 로고    scopus 로고
    • Pfiesteria piscicida and Pfiesteria shumwayae in coastal waters of Long Island, New York, USA
    • Rublee, P. A., R. Nuzzi, R. Waters, E. F. Schaefer, and J. M. Burkholder. 2006. Pfiesteria piscicida and Pfiesteria shumwayae in coastal waters of Long Island, New York, USA. Harmful Algae 5:374-379.
    • (2006) Harmful Algae , vol.5 , pp. 374-379
    • Rublee, P.A.1    Nuzzi, R.2    Waters, R.3    Schaefer, E.F.4    Burkholder, J.M.5
  • 36
    • 0036840289 scopus 로고    scopus 로고
    • Characterization of the rRNA locus of Pfiesteria piscicida and development of standard and quantitative PCR-based detection assays targeted to the nontranscribed spacer
    • Saito, K., T. Drgon, J. A. Robledo, D. N. Krupatkina, and G. R. Vasta. 2002. Characterization of the rRNA locus of Pfiesteria piscicida and development of standard and quantitative PCR-based detection assays targeted to the nontranscribed spacer. Appl. Environ. Microbiol. 68:5394-5407.
    • (2002) Appl. Environ. Microbiol , vol.68 , pp. 5394-5407
    • Saito, K.1    Drgon, T.2    Robledo, J.A.3    Krupatkina, D.N.4    Vasta, G.R.5
  • 37
    • 0000884370 scopus 로고    scopus 로고
    • Growth and feeding studies on the algal feeding stage of a Pfiesteria-like dinoflagellate
    • Seaborn, D. W., A. M. Seaborn, W. M. Dunstan, and H. G. Marshall. 1999. Growth and feeding studies on the algal feeding stage of a Pfiesteria-like dinoflagellate. Virginia J. Sci. 50:337-344.
    • (1999) Virginia J. Sci , vol.50 , pp. 337-344
    • Seaborn, D.W.1    Seaborn, A.M.2    Dunstan, W.M.3    Marshall, H.G.4
  • 38
    • 0037132733 scopus 로고    scopus 로고
    • Interaction between the toxic estuarine dinoflagellate Pfiesteria piscicida and two species of bivalve mollusks
    • Springer, J. J., S. E. Shumway, J. M. Burkholder, and H. B. Glasgow. 2002. Interaction between the toxic estuarine dinoflagellate Pfiesteria piscicida and two species of bivalve mollusks. Mar. Ecol. Prog. Ser. 245:1-10.
    • (2002) Mar. Ecol. Prog. Ser , vol.245 , pp. 1-10
    • Springer, J.J.1    Shumway, S.E.2    Burkholder, J.M.3    Glasgow, H.B.4
  • 40
    • 33746403711 scopus 로고    scopus 로고
    • Cryptoperidiniopsis brodyi gen. et sp. nov. (Dinophyceae), a small lightly armored dinoflagellate in the Pfiesteriaceae
    • Steidinger, K. A., J. H. Landsberg, P. L. Mason, W. K. Vogelbein, P. A. Tester, and R. W. Litaker. 2006. Cryptoperidiniopsis brodyi gen. et sp. nov. (Dinophyceae), a small lightly armored dinoflagellate in the Pfiesteriaceae. J. Phycol. 42:951-961.
    • (2006) J. Phycol , vol.42 , pp. 951-961
    • Steidinger, K.A.1    Landsberg, J.H.2    Mason, P.L.3    Vogelbein, W.K.4    Tester, P.A.5    Litaker, R.W.6
  • 41
    • 33746296555 scopus 로고    scopus 로고
    • Associations between fish health and Pfiesteria spp. in Chesapeake Bay and mid-Atlantic estuaries
    • Tango, P., R. Magnien, D. Goshorn, H. Bowers, B. Michael, R. Karrh, and D. Oldach. 2006. Associations between fish health and Pfiesteria spp. in Chesapeake Bay and mid-Atlantic estuaries. Harmful Algae 5:352-362.
    • (2006) Harmful Algae , vol.5 , pp. 352-362
    • Tango, P.1    Magnien, R.2    Goshorn, D.3    Bowers, H.4    Michael, B.5    Karrh, R.6    Oldach, D.7
  • 42
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTALX windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson, J. D., T. J. Gibson, F. Plewnaik, F. Jeanmougin, and D. G. Higgins. 1997. The CLUSTALX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25:4876-4882.
    • (1997) Nucleic Acids Res , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewnaik, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 43
    • 0030748867 scopus 로고    scopus 로고
    • Inhibition and facilitation of nucleic acid amplification
    • Wilson, I. G. 1997. Inhibition and facilitation of nucleic acid amplification. Appl. Environ. Microbiol. 63:3741-3751.
    • (1997) Appl. Environ. Microbiol , vol.63 , pp. 3741-3751
    • Wilson, I.G.1
  • 44
    • 32044446476 scopus 로고    scopus 로고
    • Development of a cob-18S rRNA gene real-time PCR assay for quantifying Pfiesteria shumwayae in the natural environment
    • Zhang, H., and S. Lin. 2005. Development of a cob-18S rRNA gene real-time PCR assay for quantifying Pfiesteria shumwayae in the natural environment. Appl. Environ. Microbiol. 71:7053-7063.
    • (2005) Appl. Environ. Microbiol , vol.71 , pp. 7053-7063
    • Zhang, H.1    Lin, S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.