-
1
-
-
84865122112
-
Facilation of CRISPR adapation
-
Abedon ST (2011) Facilation of CRISPR adapation. Bacteriophages 1(3):179-181
-
(2011)
Bacteriophages
, vol.1
, Issue.3
, pp. 179-181
-
-
Abedon, S.T.1
-
2
-
-
79955435335
-
Clustered regularly interspaced short palindromic repeats (CRISPRs): The hallmark of an ingenious antiviral defense mechanism in prokaryotes
-
Al-Attar S, Westra ER, van der Oost J, Brouns SJ (2011) Clustered regularly interspaced short palindromic repeats (CRISPRs): the hallmark of an ingenious antiviral defense mechanism in prokaryotes. Biol Chem 392(4):277-289
-
(2011)
Biol Chem
, vol.392
, Issue.4
, pp. 277-289
-
-
Al-Attar, S.1
Westra, E.R.2
Van Der Oost, J.3
Brouns, S.J.4
-
3
-
-
78651083184
-
A dual function of the CRISPR-Cas system in bacterial antivirus immunity and DNA repair
-
Babu M, Beloglazova N, Flick R, Graham C, Skarina T, Nocek B, Gagarinova A, Pogoutse O, Brown G, Binkowski A, Phanse S, Joachimiak A, Koonin EV, Savchenko A, Emili A, Greenblatt J, Edwards AM, Yakunin AF (2011) A dual function of the CRISPR-Cas system in bacterial antivirus immunity and DNA repair. Mol Microbiol 79(2):484-502
-
(2011)
Mol Microbiol
, vol.79
, Issue.2
, pp. 484-502
-
-
Babu, M.1
Beloglazova, N.2
Flick, R.3
Graham, C.4
Skarina, T.5
Nocek, B.6
Gagarinova, A.7
Pogoutse, O.8
Brown, G.9
Binkowski, A.10
Phanse, S.11
Joachimiak, A.12
Koonin, E.V.13
Savchenko, A.14
Emili, A.15
Greenblatt, J.16
Edwards, A.M.17
Yakunin, A.F.18
-
4
-
-
34047118522
-
CRISPR provides acquired resistance against viruses in prokaryotes
-
Barrangou R, Fremaux C, Deveau H, Richards M, Boyaval P, Moineau S, Romero DA, Horvath P (2007) CRISPR provides acquired resistance against viruses in prokaryotes. Science 315(5819):1709-1712
-
(2007)
Science
, vol.315
, Issue.5819
, pp. 1709-1712
-
-
Barrangou, R.1
Fremaux, C.2
Deveau, H.3
Richards, M.4
Boyaval, P.5
Moineau, S.6
Romero, D.A.7
Horvath, P.8
-
5
-
-
49649120271
-
A novel family of sequence-specific endoribonucleases associated with the clustered regularly interspaced short palindromic repeats
-
Beloglazova N, Brown G, Zimmerman MD, Proudfoot M, Makarova KS, Kudritska M, Kochinyan S, Wang S, Chruszcz M, Minor W, Koonin EV, Edwards AM, Savchenko A, Yakunin AF (2008) A novel family of sequence-specific endoribonucleases associated with the clustered regularly interspaced short palindromic repeats. J Biol Chem 283(29):20361-20371
-
(2008)
J Biol Chem
, vol.283
, Issue.29
, pp. 20361-20371
-
-
Beloglazova, N.1
Brown, G.2
Zimmerman, M.D.3
Proudfoot, M.4
Makarova, K.S.5
Kudritska, M.6
Kochinyan, S.7
Wang, S.8
Chruszcz, M.9
Minor, W.10
Koonin, E.V.11
Edwards, A.M.12
Savchenko, A.13
Yakunin, A.F.14
-
6
-
-
84948078131
-
-
Protein database number: 3LF
-
Beloglazova N, Skarina T, Petit P, Flick R, Brown G, Savchenko A, Yakunin AF (2010) Crystal structure and nuclease activity of tm1797, a Cas1 protein from Thermotoga maritima. Protein database number: 3LF
-
(2010)
Crystal Structure and Nuclease Activity of Tm1797, a Cas1 Protein from Thermotoga Maritima
-
-
Beloglazova, N.1
Skarina, T.2
Petit, P.3
Flick, R.4
Brown, G.5
Savchenko, A.6
Yakunin, A.F.7
-
7
-
-
19944414611
-
Complete sequence and comparative genome analysis of the dairy bacterium Streptococcus thermophilus
-
Bolotin A, Quinquis B, Renault P, Sorokin A, Ehrlich SD, Kulakauskas S, Lapidus A, Goltsman E, Mazur M, Pusch GD, Fonstein M, Overbeek R, Kyprides N, Purnelle B, Prozzi D, Ngui K, Masuy D, Hancy F, Burteau S, Boutry M, Delcour J, Goffeau A, Hols P (2004) Complete sequence and comparative genome analysis of the dairy bacterium Streptococcus thermophilus. Nat Biotechnol 22(12):1554-1558
-
(2004)
Nat Biotechnol
, vol.22
, Issue.12
, pp. 1554-1558
-
-
Bolotin, A.1
Quinquis, B.2
Renault, P.3
Sorokin, A.4
Ehrlich, S.D.5
Kulakauskas, S.6
Lapidus, A.7
Goltsman, E.8
Mazur, M.9
Pusch, G.D.10
Fonstein, M.11
Overbeek, R.12
Kyprides, N.13
Purnelle, B.14
Prozzi, D.15
Ngui, K.16
Masuy, D.17
Hancy, F.18
Burteau, S.19
Boutry, M.20
Delcour, J.21
Goffeau, A.22
Hols, P.23
more..
-
8
-
-
23844505202
-
Clustered regularly interspaced short palindrome repeats (CRISPRs) have spacers of extrachromosomal origin
-
Bolotin A, Quinquis B, Sorokin A, Ehrlich SD (2005) Clustered regularly interspaced short palindrome repeats (CRISPRs) have spacers of extrachromosomal origin. Microbiology 151(8):2551-2561
-
(2005)
Microbiology
, vol.151
, Issue.8
, pp. 2551-2561
-
-
Bolotin, A.1
Quinquis, B.2
Sorokin, A.3
Ehrlich, S.D.4
-
9
-
-
49649114086
-
Small CRISPR RNAs guide antiviral defense in prokaryotes
-
Brouns SJ, Jore MM, Lundgren M, Westra ER, Slijkhuis RJ, Snijders AP, Dickman MJ, Makarova KS, Koonin EV, van der Oost J (2008) Small CRISPR RNAs guide antiviral defense in prokaryotes. Science 321(5891):960-964
-
(2008)
Science
, vol.321
, Issue.5891
, pp. 960-964
-
-
Brouns, S.J.1
Jore, M.M.2
Lundgren, M.3
Westra, E.R.4
Slijkhuis, R.J.5
Snijders, A.P.6
Dickman, M.J.7
Makarova, K.S.8
Koonin, E.V.9
Van Der Oost, J.10
-
10
-
-
58049191229
-
Cas6 is an endoribonuclease that generates guide RNAs for invader defense in prokaryotes
-
Carte J, Wang R, Li H, Terns RM, Terns MP (2008) Cas6 is an endoribonuclease that generates guide RNAs for invader defense in prokaryotes. Genes Dev 22(24):3489-3496
-
(2008)
Genes Dev
, vol.22
, Issue.24
, pp. 3489-3496
-
-
Carte, J.1
Wang, R.2
Li, H.3
Terns, R.M.4
Terns, M.P.5
-
11
-
-
77954423847
-
Comparative network clustering of direct repeats (DRs) and cas genes confirms the possibility of the horizontal transfer of CRISPR locus among bacteria
-
Chakraborty S, Snijders AP, Chakravorty R, Ahmed M, Tarek AM, Hossain MA (2010) Comparative network clustering of direct repeats (DRs) and cas genes confirms the possibility of the horizontal transfer of CRISPR locus among bacteria. Mol Phylogenet Evol 56(3):878-887
-
(2010)
Mol Phylogenet Evol
, vol.56
, Issue.3
, pp. 878-887
-
-
Chakraborty, S.1
Snijders, A.P.2
Chakravorty, R.3
Ahmed, M.4
Tarek, A.M.5
Hossain, M.A.6
-
12
-
-
70649084195
-
Genotyping of genetically monomorphic bacteria: DNA sequencing in Mycobacterium tuberculosis highlights the limitations of current methodologies
-
Comas I, Homolka S, Niemann S, Gagneux S (2009) Genotyping of genetically monomorphic bacteria: DNA sequencing in Mycobacterium tuberculosis highlights the limitations of current methodologies. PLoS ONE 4(11):e7815
-
(2009)
Plos ONE
, vol.4
, Issue.11
-
-
Comas, I.1
Homolka, S.2
Niemann, S.3
Gagneux, S.4
-
13
-
-
50349083723
-
Insight into microevolution of Yersinia pestis by clustered regularly interspaced short palindromic repeats
-
Cui Y, Li Y, Gorgé O, Platonov ME, Yan Y, Guo Z, Pourcel C, Dentovskaya SV, Balakhonov SV, Wang X, Song Y, Anisimov AP, Vergnaud G, Yang R (2008) Insight into microevolution of Yersinia pestis by clustered regularly interspaced short palindromic repeats. PLoS ONE 3(7):e2652
-
(2008)
Plos ONE
, vol.3
, Issue.7
-
-
Cui, Y.1
Li, Y.2
Gorgé, O.3
Platonov, M.E.4
Yan, Y.5
Guo, Z.6
Pourcel, C.7
Dentovskaya, S.V.8
Balakhonov, S.V.9
Wang, X.10
Song, Y.11
Anisimov, A.P.12
Vergnaud, G.13
Yang, R.14
-
14
-
-
84864864464
-
Molecular memory of prior infections activates the CRISPR-Cas adaptive bacterial immunity system
-
Datsenko KA, Pougach K, Tikhonov A, Wanner BL, Severinov K, Semenova E (2012) Molecular memory of prior infections activates the CRISPR-Cas adaptive bacterial immunity system. Nat Commun 10(3):945
-
(2012)
Nat Commun
, vol.10
, Issue.3
, pp. 945
-
-
Datsenko, K.A.1
Pougach, K.2
Tikhonov, A.3
Wanner, B.L.4
Severinov, K.5
Semenova, E.6
-
15
-
-
80053615140
-
Complete genome sequence of the pigmented Streptococcus thermophilus strain JIM8232
-
Delorme C, Bartholini C, Luraschi M, Pons N, Loux V, Almeida M, Guédon E, Gibrat JF, Renault P (2011) Complete genome sequence of the pigmented Streptococcus thermophilus strain JIM8232. J Bacteriol 193(19):5581-5582
-
(2011)
J Bacteriol
, vol.193
, Issue.19
, pp. 5581-5582
-
-
Delorme, C.1
Bartholini, C.2
Luraschi, M.3
Pons, N.4
Loux, V.5
Almeida, M.6
Guédon, E.7
Gibrat, J.F.8
Renault, P.9
-
16
-
-
79953250082
-
CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III
-
Deltcheva E, Chylinski K, Sharma CM, Gonzales K, Chao Y, Pirzada ZA, Eckert MR, Vogel J, Charpentier E (2011) CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III. Nature 471(7340):602-607
-
(2011)
Nature
, vol.471
, Issue.7340
, pp. 602-607
-
-
Deltcheva, E.1
Chylinski, K.2
Sharma, C.M.3
Gonzales, K.4
Chao, Y.5
Pirzada, Z.A.6
Eckert, M.R.7
Vogel, J.8
Charpentier, E.9
-
17
-
-
79960911372
-
Sequencing and validation of the genome of a Campylobacter concisus reveals intra-species diversity
-
Deshpande NP, Kaakoush NO, Mitchell H, Janitz K, Raftery MJ, Li SS, Wilkins MR (2011) Sequencing and validation of the genome of a Campylobacter concisus reveals intra-species diversity. PLoS ONE 6(7)
-
(2011)
Plos ONE
, vol.6
, Issue.7
-
-
Deshpande, N.P.1
Kaakoush, N.O.2
Mitchell, H.3
Janitz, K.4
Raftery, M.J.5
Li, S.S.6
Wilkins, M.R.7
-
18
-
-
38949123143
-
Phage response to CRISPR-encoded resistance in Streptococcus thermophilus
-
Deveau H, Barrangou R, Garneau JE, Labonté J, Fremaux C, Boyaval P, Romero DA, Horvath P, Moineau S (2008) Phage response to CRISPR-encoded resistance in Streptococcus thermophilus. J Bacteriol 190(4):1390-1400
-
(2008)
J Bacteriol
, vol.190
, Issue.4
, pp. 1390-1400
-
-
Deveau, H.1
Barrangou, R.2
Garneau, J.E.3
Labonté, J.4
Fremaux, C.5
Boyaval, P.6
Romero, D.A.7
Horvath, P.8
Moineau, S.9
-
19
-
-
33744503676
-
Crystal structure of hypothetical protein TTHB192 from Thermus thermophilus HB8 reveals a new protein family with an RNA recognition motif-like domain
-
Ebihara A, Yao M, Masui R, Tanaka I, Yokoyama S, Kuramitsu S (2006) Crystal structure of hypothetical protein TTHB192 from Thermus thermophilus HB8 reveals a new protein family with an RNA recognition motif-like domain. Protein Sci 15(6):1494-1499
-
(2006)
Protein Sci
, vol.15
, Issue.6
, pp. 1494-1499
-
-
Ebihara, A.1
Yao, M.2
Masui, R.3
Tanaka, I.4
Yokoyama, S.5
Kuramitsu, S.6
-
21
-
-
84861479896
-
The crystal structure of the CRISPR-associated protein Csn2 from Streptococcus agalactiae
-
Ellinger P, Arslan Z, Wurm R, Tschapek B, MacKenzie C, Pfeffer K, Panjikar S, Wagner R, Schmitt L, Gohlke H, Pul Ü, Smits SH (2012) The crystal structure of the CRISPR-associated protein Csn2 from Streptococcus agalactiae. J Struct Biol 178(3):350-362
-
(2012)
J Struct Biol
, vol.178
, Issue.3
, pp. 350-362
-
-
Ellinger, P.1
Arslan, Z.2
Wurm, R.3
Tschapek, B.4
Mackenzie, C.5
Pfeffer, K.6
Panjikar, S.7
Wagner, R.8
Schmitt, L.9
Gohlke, H.10
Pul, Ü.11
Smits, S.H.12
-
23
-
-
78149261827
-
The CRISPR/Cas bacterial immune system cleaves bacteriophage and plasmid DNA
-
Garneau JE, Dupuis M-È, Villion M, Romero DA, Barrangou R, Boyaval P, Fremaux C, Horvath P, Magadán AH, Moineau S (2010) The CRISPR/Cas bacterial immune system cleaves bacteriophage and plasmid DNA. Nature 468(7320):67-71
-
(2010)
Nature
, vol.468
, Issue.7320
, pp. 67-71
-
-
Garneau, J.E.1
Dupuis, M.-È.2
Villion, M.3
Romero, D.A.4
Barrangou, R.5
Boyaval, P.6
Fremaux, C.7
Horvath, P.8
Magadán, A.H.9
Moineau, S.10
-
24
-
-
84857425543
-
Legionella pneumophila ST1/Paris-Pulsotype subtyping by spoligotyping
-
Epub ahead of print
-
Ginevra C, Jacotin N, Diancourt L, Guigon G, Arquilliere R, Meugnier H, Descours G, Vandenesch F, Etienne J, Lina G, Caro V, Jarraud S (2012) Legionella pneumophila ST1/Paris-Pulsotype subtyping by spoligotyping. J Clin Microbiol (Epub ahead of print)
-
(2012)
J Clin Microbiol
-
-
Ginevra, C.1
Jacotin, N.2
Diancourt, L.3
Guigon, G.4
Arquilliere, R.5
Meugnier, H.6
Descours, G.7
Vandenesch, F.8
Etienne, J.9
Lina, G.10
Caro, V.11
Jarraud, S.12
-
25
-
-
33744941078
-
The repetitive DNA elements called CRISPRs and their associated genes: Evidence of horizontal transfer among prokaryotes
-
Godde JS, Bickerton A (2006) The repetitive DNA elements called CRISPRs and their associated genes: evidence of horizontal transfer among prokaryotes. J Mol Evol 62:718-729
-
(2006)
J Mol Evol
, vol.62
, pp. 718-729
-
-
Godde, J.S.1
Bickerton, A.2
-
26
-
-
80052190507
-
Specialized adaptation of a lactic acid bacterium to the milk environment: The comparative genomics of Streptococcus thermophilus LMD-9
-
Goh YJ, Goin C, O’Flaherty S, Altermann E, Hutkins R (2011) Specialized adaptation of a lactic acid bacterium to the milk environment: the comparative genomics of Streptococcus thermophilus LMD-9. Microb Cell Fact 10(Suppl 1):S22
-
(2011)
Microb Cell Fact
, vol.10
, pp. S22
-
-
Goh, Y.J.1
Goin, C.2
O’Flaherty, S.3
Altermann, E.4
Hutkins, R.5
-
27
-
-
57049149666
-
Prokaryotic silencing (Psi)RNAs in Pyrococcus furiosus
-
Hale C, Kleppe K, Terns RM, Terns MP (2008) Prokaryotic silencing (psi)RNAs in Pyrococcus furiosus. RNA 14(12):2572-2579
-
(2008)
RNA
, vol.14
, Issue.12
, pp. 2572-2579
-
-
Hale, C.1
Kleppe, K.2
Terns, R.M.3
Terns, M.P.4
-
28
-
-
70449753811
-
RNAguided RNA cleavage by a CRISPR RNA-Cas protein complex
-
Hale CR, Zhao P, Olson S, Duff MO, Graveley BR, Wells L, Terns RM, Terns MP (2009) RNAguided RNA cleavage by a CRISPR RNA-Cas protein complex. Cell 139(5):945-956
-
(2009)
Cell
, vol.139
, Issue.5
, pp. 945-956
-
-
Hale, C.R.1
Zhao, P.2
Olson, S.3
Duff, M.O.4
Graveley, B.R.5
Wells, L.6
Terns, R.M.7
Terns, M.P.8
-
29
-
-
67349235333
-
SSO1450-a CAS1 protein from Sulfolobus solfataricus P2 with high affinity for RNA and DNA
-
Han D, Lehmann K, Krauss G (2009) SSO1450-a CAS1 protein from Sulfolobus solfataricus P2 with high affinity for RNA and DNA. FEBS Lett 583(12):1928-1932
-
(2009)
FEBS Lett
, vol.583
, Issue.12
, pp. 1928-1932
-
-
Han, D.1
Lehmann, K.2
Krauss, G.3
-
30
-
-
77956498326
-
Sequence-and structurespecific RNA processing by a CRISPR endonuclease
-
Haurwitz RE, Jinek M, Wiedenheft B, Zhou K, Doudna JA (2010) Sequence-and structurespecific RNA processing by a CRISPR endonuclease. Science 329(5997):1355-1358
-
(2010)
Science
, vol.329
, Issue.5997
, pp. 1355-1358
-
-
Haurwitz, R.E.1
Jinek, M.2
Wiedenheft, B.3
Zhou, K.4
Doudna, J.A.5
-
31
-
-
77957124941
-
Heterogeneous diversity of spacers within CRISPR (Clustered regularly interspaced short palindromic repeats)
-
He J, Deem MW (2010) Heterogeneous diversity of spacers within CRISPR (clustered regularly interspaced short palindromic repeats). Phys Rev Lett 105(12):128102
-
(2010)
Phys Rev Lett
, vol.105
, Issue.12
-
-
He, J.1
Deem, M.W.2
-
32
-
-
74249095519
-
CRISPR/Cas, the immune system of bacteria and archaea
-
Horvath P, Barrangou R (2010) CRISPR/Cas, the immune system of bacteria and archaea. Science 327(5962):167-170
-
(2010)
Science
, vol.327
, Issue.5962
, pp. 167-170
-
-
Horvath, P.1
Barrangou, R.2
-
33
-
-
64449088715
-
Comparative analysis of CRISPR loci in lactic acid bacteria genomes
-
Horvath P, Coûté-Monvoisin AC, Romero DA, Boyaval P, Fremaux C, Barrangou R (2009) Comparative analysis of CRISPR loci in lactic acid bacteria genomes. Int J Food Microbiol 131(1):62-70
-
(2009)
Int J Food Microbiol
, vol.131
, Issue.1
, pp. 62-70
-
-
Horvath, P.1
Coûté-Monvoisin, A.C.2
Romero, D.A.3
Boyaval, P.4
Fremaux, C.5
Barrangou, R.6
-
34
-
-
38949214103
-
Diversity, activity, and evolution of CRISPR loci in Streptococcus thermophilus
-
Horvath P, Romero DA, Coûté-Monvoisin AC, Richards M, Deveau H, Moineau S, Boyaval P, Fremaux C, Barrangou R (2008) Diversity, activity, and evolution of CRISPR loci in Streptococcus thermophilus. J Bacteriol 190(4):1401-1412
-
(2008)
J Bacteriol
, vol.190
, Issue.4
, pp. 1401-1412
-
-
Horvath, P.1
Romero, D.A.2
Coûté-Monvoisin, A.C.3
Richards, M.4
Deveau, H.5
Moineau, S.6
Boyaval, P.7
Fremaux, C.8
Barrangou, R.9
-
35
-
-
80052698473
-
Helicase dissociation and annealing of RNA-DNA hybrids by Escherichia coli Cas3 protein
-
Howard JA, Delmas S, Ivančić-Baće I, Bolt EL (2011) Helicase dissociation and annealing of RNA-DNA hybrids by Escherichia coli Cas3 protein. Biochem J 439(1):85-95
-
(2011)
Biochem J
, vol.439
, Issue.1
, pp. 85-95
-
-
Howard, J.A.1
Delmas, S.2
Ivančić-Baće, I.3
Bolt, E.L.4
-
37
-
-
0036267740
-
Identification of genes that are associated with DNA repeats in prokaryotes
-
ZPW Jansen R, van Embden JD, Gaastra W, Schouls LM (2002) Identification of genes that are associated with DNA repeats in prokaryotes. Mol Microbiol 43(6):1565-1575
-
(2002)
Mol Microbiol
, vol.43
, Issue.6
, pp. 1565-1575
-
-
1Zpw Jansen, R.1
Van Embden, J.D.2
Gaastra, W.3
Schouls, L.M.4
-
38
-
-
84865070369
-
A programmable dual-RNA-Guided DNA endonuclease in adaptive bacterial immunity
-
Jinek M, Chylinski K, Fonfara I, Hauer M, Doudna JA, Charpentier E (2012) A programmable dual-RNA-Guided DNA endonuclease in adaptive bacterial immunity. Science 337:816-821
-
(2012)
Science
, vol.337
, pp. 816-821
-
-
Jinek, M.1
Chylinski, K.2
Fonfara, I.3
Hauer, M.4
Doudna, J.A.5
Charpentier, E.6
-
40
-
-
84859145768
-
Crystal structure of Streptococcus pyogenes csn2 reveals calcium-dependent conformational changes in its tertiary and quaternary structure
-
Koo Y, Jung DK, Bae E (2012) Crystal structure of Streptococcus pyogenes csn2 reveals calcium-dependent conformational changes in its tertiary and quaternary structure. PLoS ONE 7(3):e33401
-
(2012)
Plos ONE
, vol.7
, Issue.3
-
-
Koo, Y.1
Jung, D.K.2
Bae, E.3
-
41
-
-
84861410173
-
Structural and biochemical characterization of HP0315 from Helicobacter pylori as a VapD protein with an endoribonuclease activity
-
(Epub ahead of print)
-
Kwon AR, Kim JH, Park SJ, Lee KY, Min YH, Im H, Lee I, Lee KY, Lee BJ (2012) Structural and biochemical characterization of HP0315 from Helicobacter pylori as a VapD protein with an endoribonuclease activity. Nucleic Acids Res (Epub ahead of print)
-
(2012)
Nucleic Acids Res
-
-
Kwon, A.R.1
Kim, J.H.2
Park, S.J.3
Lee, K.Y.4
Min, Y.H.5
Im, H.6
Lee, I.7
Lee, K.Y.8
Lee, B.J.9
-
42
-
-
84867218972
-
Identification, structural, and biochemical characterization of a group of large Csn2 proteins involved in CRISPR-mediated bacterial immunity
-
Epub ahead of print
-
Lee KH, Lee SG, Eun Lee K, Jeon H, Robinson H, Oh BH (2012) Identification, structural, and biochemical characterization of a group of large Csn2 proteins involved in CRISPR-mediated bacterial immunity. Proteins. doi:10.1002/prot.24138 (Epub ahead of print)
-
(2012)
Proteins
-
-
Lee, K.H.1
Lee, S.G.2
Eun Lee, K.3
Jeon, H.4
Robinson, H.5
Oh, B.H.6
-
43
-
-
33748096466
-
A putative viral defence mechanism in archaeal cells
-
Lillestøl RK, Redder P, Garrett RA, Brügger K (2006) A putative viral defence mechanism in archaeal cells. Archaea 2(1):59-72
-
(2006)
Archaea
, vol.2
, Issue.1
, pp. 59-72
-
-
Lillestøl, R.K.1
Redder, P.2
Garrett, R.A.3
Brügger, K.4
-
44
-
-
62949197925
-
CRISPR families of the crenarchaeal genus Sulfolobus: Bidirectional transcription and dynamic properties
-
Lillestøl RK, Shah SA, Brügger K, Redder P, Phan H, Christiansen J, Garrett RA (2009) CRISPR families of the crenarchaeal genus Sulfolobus: bidirectional transcription and dynamic properties. Mol Microbiol 72(1):259-272
-
(2009)
Mol Microbiol
, vol.72
, Issue.1
, pp. 259-272
-
-
Lillestøl, R.K.1
Shah, S.A.2
Brügger, K.3
Redder, P.4
Phan, H.5
Christiansen, J.6
Garrett, R.A.7
-
45
-
-
84866043524
-
The highly dynamic CRISPR1 system of Streptococcus agalactiae controls the diversity of its mobilome
-
Lopez-Sanchez MJ, Sauvage E, Da Cunha V, Clermont D, Ratsima Hariniaina E, Gonzalez-Zorn B, Poyart C, Rosinski-Chupin I, Glaser P (2012) The highly dynamic CRISPR1 system of Streptococcus agalactiae controls the diversity of its mobilome. Mol Microbiol. doi:10.1111/j.1365-2958.2012.08172.x
-
(2012)
Mol Microbiol
-
-
Lopez-Sanchez, M.J.1
Sauvage, E.2
Da Cunha, V.3
Clermont, D.4
Ratsima Hariniaina, E.5
Gonzalez-Zorn, B.6
Poyart, C.7
Rosinski-Chupin, I.8
Glaser, P.9
-
46
-
-
84864085433
-
Cleavage of phage DNA by the Streptococcus thermophilus CRISPR3-Cas system
-
Magadán AH, Dupuis M-È, Villion M, Moineau S (2012) Cleavage of phage DNA by the Streptococcus thermophilus CRISPR3-Cas system. PLoS ONE 7(7):e40913
-
(2012)
Plos ONE
, vol.7
, Issue.7
, pp. 40913
-
-
Magadán, A.H.1
Dupuis, M.-È.2
Villion, M.3
Moineau, S.4
-
47
-
-
0037079680
-
A DNA repair system specific for thermophilic Archaea and bacteria predicted by genomic context analysis
-
Makarova KS, Aravind L, Grishin NV, Rogozin IB, Koonin EV (2002) A DNA repair system specific for thermophilic Archaea and bacteria predicted by genomic context analysis. Nucleic Acids Res 30(2):482-496
-
(2002)
Nucleic Acids Res
, vol.30
, Issue.2
, pp. 482-496
-
-
Makarova, K.S.1
Aravind, L.2
Grishin, N.V.3
Rogozin, I.B.4
Koonin, E.V.5
-
48
-
-
34248374277
-
A putative RNAinterference-based immune system in prokaryotes: Computational analysis of the predicted enzymatic machinery, functional analogies wiTheukaryotic RNAi, and hypothetical mechanisms of action
-
Makarova KS, Grishin NV, Shabalina SA, Wolf YI, Koonin EV (2006a) A putative RNAinterference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies wiTheukaryotic RNAi, and hypothetical mechanisms of action. Biol Direct 1:7
-
(2006)
Biol Direct
, vol.1
, pp. 7
-
-
Makarova, K.S.1
Grishin, N.V.2
Shabalina, S.A.3
Wolf, Y.I.4
Koonin, E.V.5
-
49
-
-
79956157571
-
Evolution and classification of the CRISPR-Cas systems
-
Makarova KS, Haft DH, Barrangou R, Brouns SJ, Charpentier E, Horvath P, Moineau S, Mojica FJ, Wolf YI, Yakunin AF, van der Oost J, Koonin EV (2011) Evolution and classification of the CRISPR-Cas systems. Nat Rev Microbiol 9(6):467-477
-
(2011)
Nat Rev Microbiol
, vol.9
, Issue.6
, pp. 467-477
-
-
Makarova, K.S.1
Haft, D.H.2
Barrangou, R.3
Brouns, S.J.4
Charpentier, E.5
Horvath, P.6
Moineau, S.7
Mojica, F.J.8
Wolf, Y.I.9
Yakunin, A.F.10
Van Der Oost, J.11
Koonin, E.V.12
-
50
-
-
33750341148
-
Comparative genomics of the lactic acid bacteria
-
Makarova KS, Slesarev A, Wolf Y, Sorokin A, Mirkin B, Koonin EV, Pavlov A, Pavlova N, Karamychev V, Polouchine N, Shakhova V, Grigoriev I, Lou Y, Rohksar D, Lucas S, Huang K, Goodstein DM, Hawkins T, Plengvidhya V, Welker D, Hughes J, Goh Y, Benson A, Baldwin K, Lee JH, Díaz-Muñiz I, Dosti B, Smeianov V, Wechter W, Barabote R, Lorca G, Altermann E, Barrangou R, Ganesan B, Xie Y, Rawsthorne H, Tamir D, Parker C, Breidt F, Broadbent J, Hutkins R, O’Sullivan D, Steele J, Unlu G, Saier M, Klaenhammer T, Richardson P, Kozyavkin S, Weimer B, Mills D (2006b) Comparative genomics of the lactic acid bacteria. Proc Natl Acad Sci USA 103(42):15611-15616
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, Issue.42
, pp. 15611-15616
-
-
Makarova, K.S.1
Slesarev, A.2
Wolf, Y.3
Sorokin, A.4
Mirkin, B.5
Koonin, E.V.6
Pavlov, A.7
Pavlova, N.8
Karamychev, V.9
Polouchine, N.10
Shakhova, V.11
Grigoriev, I.12
Lou, Y.13
Rohksar, D.14
Lucas, S.15
Huang, K.16
Goodstein, D.M.17
Hawkins, T.18
Plengvidhya, V.19
Welker, D.20
Hughes, J.21
Goh, Y.22
Benson, A.23
Baldwin, K.24
Lee, J.H.25
Díaz-Muñiz, I.26
Dosti, B.27
Smeianov, V.28
Wechter, W.29
Barabote, R.30
Lorca, G.31
Altermann, E.32
Barrangou, R.33
Ganesan, B.34
Xie, Y.35
Rawsthorne, H.36
Tamir, D.37
Parker, C.38
Breidt, F.39
Broadbent, J.40
Hutkins, R.41
O’Sullivan, D.42
Steele, J.43
Unlu, G.44
Saier, M.45
Klaenhammer, T.46
Richardson, P.47
Kozyavkin, S.48
Weimer, B.49
Mills, D.50
more..
-
51
-
-
75249105299
-
Campylobacter jejuni and Campylobacter coli genotyping by high-resolution melting analysis of a flaA fragment
-
Merchant-Patel S, Blackall PJ, Templeton J, Price EP, Tong SY, Huygens F, Giffard PM (2010) Campylobacter jejuni and Campylobacter coli genotyping by high-resolution melting analysis of a flaA fragment. Appl Environ Microbiol 76(2):493-499
-
(2010)
Appl Environ Microbiol
, vol.76
, Issue.2
, pp. 493-499
-
-
Merchant-Patel, S.1
Blackall, P.J.2
Templeton, J.3
Price, E.P.4
Tong, S.Y.5
Huygens, F.6
Giffard, P.M.7
-
52
-
-
76449099470
-
CRISPR analysis of bacteriophage-insensitive mutants (BIMs) of industrial Streptococcus thermophilus-implications for starter design
-
Mills S, Griffin C, Coffey A, Meijer WC, Hafkamp B, Ross RP (2010) CRISPR analysis of bacteriophage-insensitive mutants (BIMs) of industrial Streptococcus thermophilus-implications for starter design. J Appl Microbiol 108(3):945-955
-
(2010)
J Appl Microbiol
, vol.108
, Issue.3
, pp. 945-955
-
-
Mills, S.1
Griffin, C.2
Coffey, A.3
Meijer, W.C.4
Hafkamp, B.5
Ross, R.P.6
-
53
-
-
67349134525
-
Novel macroarray-based method of Corynebacterium diphtheriae genotyping: Evaluation in a field study in Belarus
-
Mokrousov I, Vyazovaya A, Kolodkina V, Limeschenko E, Titov L, Narvskaya O (2009) Novel macroarray-based method of Corynebacterium diphtheriae genotyping: evaluation in a field study in Belarus. Eur J Clin Microbiol Infect Dis 28(6):701-703
-
(2009)
Eur J Clin Microbiol Infect Dis
, vol.28
, Issue.6
, pp. 701-703
-
-
Mokrousov, I.1
Vyazovaya, A.2
Kolodkina, V.3
Limeschenko, E.4
Titov, L.5
Narvskaya, O.6
-
54
-
-
80052213049
-
Crystal structure of clustered regularly interspaced short palindromic repeats (CRISPR)-associated Csn2 protein revealed Ca2+-dependent doublestranded DNA binding activity
-
Nam KH, Kurinov I, Ke A (2011) Crystal structure of clustered regularly interspaced short palindromic repeats (CRISPR)-associated Csn2 protein revealed Ca2+-dependent doublestranded DNA binding activity. J Biol Chem 286(35):30759-30768
-
(2011)
J Biol Chem
, vol.286
, Issue.35
, pp. 30759-30768
-
-
Nam, K.H.1
Kurinov, I.2
Ke, A.3
-
55
-
-
77956754865
-
The scottish structural proteomics facility: Targets, methods and outputs
-
Oke M, Carter LG, Johnson KA, Liu H, McMahon SA, Yan X, Kerou M, Weikart ND, Kadi N, Sheikh MA, Schmelz S, Dorward M, Zawadzki M, Cozens C, Falconer H, Powers H, Overton IM, Van Niekerk CAJ, Peng X, Patel P, Garrett RA, Prangishvili D, Botting CH, Coote PJ, Dryden DTF, Barton GJ, Schwarz-Linek U, Challis GL, Taylor GL, White MF, Naismith JH (2010) The scottish structural proteomics facility: targets, methods and outputs. J Struct Funct Genomics 11:167-180
-
(2010)
J Struct Funct Genomics
, vol.11
, pp. 167-180
-
-
Oke, M.1
Carter, L.G.2
Johnson, K.A.3
Liu, H.4
McMahon, S.A.5
Yan, X.6
Kerou, M.7
Weikart, N.D.8
Kadi, N.9
Sheikh, M.A.10
Schmelz, S.11
Dorward, M.12
Zawadzki, M.13
Cozens, C.14
Falconer, H.15
Powers, H.16
Overton, I.M.17
Van Niekerk, C.18
Peng, X.19
Patel, P.20
Garrett, R.A.21
Prangishvili, D.22
Botting, C.H.23
Coote, P.J.24
Dryden, D.25
Barton, G.J.26
Schwarz-Linek, U.27
Challis, G.L.28
Taylor, G.L.29
White, M.F.30
Naismith, J.H.31
more..
-
57
-
-
34249726643
-
High-resolution DNA melt curve analysis of the clustered, regularly interspaced short-palindromic-repeat locus of Campylobacter jejuni
-
Price EP, Smith H, Huygens F, Giffard PM (2007) High-resolution DNA melt curve analysis of the clustered, regularly interspaced short-palindromic-repeat locus of Campylobacter jejuni. Appl Environ Microbiol 71(10):3431-3436
-
(2007)
Appl Environ Microbiol
, vol.71
, Issue.10
, pp. 3431-3436
-
-
Price, E.P.1
Smith, H.2
Huygens, F.3
Giffard, P.M.4
-
58
-
-
84948100393
-
-
Protein database number: 3EXC
-
Proudfoot M, Brown M, Singer AU, Skarina T, Tan K, Kagan O, Edwards AM, Joachimiak A, Savchenko A, Yakunin AF 2008 Structure of the RNase SSO8090 from Sulfolobus solfataricus. Protein database number: 3EXC
-
(2008)
Structure of the Rnase SSO8090 from Sulfolobus Solfataricus
-
-
Proudfoot, M.1
Brown, M.2
Singer, A.U.3
Skarina, T.4
Tan, K.5
Kagan, O.6
Edwards, A.M.7
Joachimiak, A.8
Savchenko, A.9
Yakunin, A.F.10
-
59
-
-
77949398275
-
Identification and characterization of E. Coli CRISPR-cas promoters and their silencing by H-NS
-
Pul U, Wurm R, Arslan Z, Geissen R, Hofmann N, Wagner R (2010) Identification and characterization of E. coli CRISPR-cas promoters and their silencing by H-NS. Mol Microbiol 75(6):1495-1512
-
(2010)
Mol Microbiol
, vol.75
, Issue.6
, pp. 1495-1512
-
-
Pul, U.1
Wurm, R.2
Arslan, Z.3
Geissen, R.4
Hofmann, N.5
Wagner, R.6
-
60
-
-
77955513051
-
Streptococcus thermophilus bacteriophages
-
Quiberoni A, Moineau S, Rousseau GM, Reinheimer J, Ackermann H-W (2010) Streptococcus thermophilus bacteriophages. Int Dairy J 20(10):1-8
-
(2010)
Int Dairy J
, vol.20
, Issue.10
, pp. 1-8
-
-
Quiberoni, A.1
Moineau, S.2
Rousseau, G.M.3
Reinheimer, J.4
Ackermann, H.-W.5
-
63
-
-
80755145195
-
The Streptococcus thermophilus CRISPR/Cas system provides immunity in Escherichia coli
-
Sapranauskas R, Gasiunas G, Fremaux C, Barrangou R, Horvath P, Siksnys V (2011) The Streptococcus thermophilus CRISPR/Cas system provides immunity in Escherichia coli. Nucleic Acids Res 39(21):9275-9282
-
(2011)
Nucleic Acids Res
, vol.39
, Issue.21
, pp. 9275-9282
-
-
Sapranauskas, R.1
Gasiunas, G.2
Fremaux, C.3
Barrangou, R.4
Horvath, P.5
Siksnys, V.6
-
64
-
-
0037236212
-
Comparative genotyping of Campylobacter jejuni by amplified fragment length polymorphism, multilocus sequence typing, and short repeat sequencing: Strain diversity, host range, and recombination
-
Schouls LM, Reulen S, Duim B, Wagenaar JA, Willems RJ, Dingle KE, Colles FM, Van Embden JD (2003) Comparative genotyping of Campylobacter jejuni by amplified fragment length polymorphism, multilocus sequence typing, and short repeat sequencing: strain diversity, host range, and recombination. J Clin Microbiol 41(1):15-26
-
(2003)
J Clin Microbiol
, vol.41
, Issue.1
, pp. 15-26
-
-
Schouls, L.M.1
Reulen, S.2
Duim, B.3
Wagenaar, J.A.4
Willems, R.J.5
Dingle, K.E.6
Colles, F.M.7
Van Embden, J.D.8
-
65
-
-
79959963663
-
Interference by clustered regularly interspaced short palindromic repeat (CRISPR) RNA is governed by a seed sequence
-
Semenova E, Jore MM, Datsenko KA, Semenova A, Westra ER, Wanner B, van der Oost J, Brouns SJ, Severinov K (2011) Interference by clustered regularly interspaced short palindromic repeat (CRISPR) RNA is governed by a seed sequence. Proc Natl Acad Sci USA 108(25):10098-10103
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, Issue.25
, pp. 10098-10103
-
-
Semenova, E.1
Jore, M.M.2
Datsenko, K.A.3
Semenova, A.4
Westra, E.R.5
Wanner, B.6
Van Der Oost, J.7
Brouns, S.J.8
Severinov, K.9
-
66
-
-
39149142575
-
CRISPR-a widespread system that provides acquired resistance against phages in bacteria and archaea
-
Sorek R, Kunin V, Hugenholtz P (2008) CRISPR-a widespread system that provides acquired resistance against phages in bacteria and archaea. Nat Rev Microbiol 6(3):181-186
-
(2008)
Nat Rev Microbiol
, vol.6
, Issue.3
, pp. 181-186
-
-
Sorek, R.1
Kunin, V.2
Hugenholtz, P.3
-
67
-
-
78751514966
-
Complete genome sequence of Streptococcus thermophilus strain ND03
-
Sun Z, Chen X, Wang J, Zhao W, Shao Y, Wu L, Zhou Z, Sun T, Wang L, Meng H, Zhang H, Chen W (2011) Complete genome sequence of Streptococcus thermophilus strain ND03. J Bacteriol 193(3):793-794
-
(2011)
J Bacteriol
, vol.193
, Issue.3
, pp. 793-794
-
-
Sun, Z.1
Chen, X.2
Wang, J.3
Zhao, W.4
Shao, Y.5
Wu, L.6
Zhou, Z.7
Sun, T.8
Wang, L.9
Meng, H.10
Zhang, H.11
Chen, W.12
-
68
-
-
84860433123
-
CRISPR interference directs strand specific spacer acquisition
-
Swarts DC, Mosterd C, van Passel MW, Brouns SJ (2012) CRISPR interference directs strand specific spacer acquisition. PLoS ONE 7(4):e35888
-
(2012)
Plos ONE
, vol.7
, Issue.4
, pp. 35888
-
-
Swarts, D.C.1
Mosterd, C.2
Van Passel, M.W.3
Brouns, S.J.4
-
69
-
-
84857812156
-
Nature and intensity of selection pressure on CRISPR-associated genes
-
Epub ahead of print
-
Takeuchi N, Wolf YI, Makarova KS, Koonin EV (2012) Nature and intensity of selection pressure on CRISPR-associated genes. J Bact (Epub ahead of print)
-
(2012)
J Bact
-
-
Takeuchi, N.1
Wolf, Y.I.2
Makarova, K.S.3
Koonin, E.V.4
-
70
-
-
84856412774
-
Molecular identification and characterization of clustered regularly interspaced short palindromic repeats (CRISPRs) in a urease-positive thermophilic Campylobacter sp. (UPTC)
-
Tasaki E, Hirayama J, Tazumi A, Hayashi K, Hara Y, Ueno H, Moore JE, Millar BC, Matsuda M (2012) Molecular identification and characterization of clustered regularly interspaced short palindromic repeats (CRISPRs) in a urease-positive thermophilic Campylobacter sp. (UPTC). World J Microbiol Biotechnol 28(2):713-20
-
(2012)
World J Microbiol Biotechnol
, vol.28
, Issue.2
, pp. 713-720
-
-
Tasaki, E.1
Hirayama, J.2
Tazumi, A.3
Hayashi, K.4
Hara, Y.5
Ueno, H.6
Moore, J.E.7
Millar, B.C.8
Matsuda, M.9
-
71
-
-
84866025707
-
The rise and fall of CRISPRs-dynamics of spacer acquisition and loss
-
Westra ER, Brouns SJ (2012) The rise and fall of CRISPRs-dynamics of spacer acquisition and loss. Mol Microbiol. doi:10.1111/j.1365-2958.2012.08170.x
-
(2012)
Mol Microbiol
-
-
Westra, E.R.1
Brouns, S.J.2
-
72
-
-
79960029056
-
RNA-guided complex from a bacterial immune system enhances target recognition through seed sequence interactions
-
Wiedenheft B, van Duijn E, Bultema JB, Waghmare SP, Zhou K, Barendregt A, Westphal W, Heck AJ, Boekema EJ, Dickman MJ, Doudna JA (2011) RNA-guided complex from a bacterial immune system enhances target recognition through seed sequence interactions. Proc Natl Acad Sci USA 108(25):10092-10097
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, Issue.25
, pp. 10092-10097
-
-
Wiedenheft, B.1
Van Duijn, E.2
Bultema, J.B.3
Waghmare, S.P.4
Zhou, K.5
Barendregt, A.6
Westphal, W.7
Heck, A.J.8
Boekema, E.J.9
Dickman, M.J.10
Doudna, J.A.11
-
73
-
-
66349134987
-
Structural basis for DNase activity of a conserved protein implicated in CRISPR-mediated genome defense
-
Wiedenheft B, Zhou K, Jinek M, Coyle SM, Ma W, Doudna JA (2009) Structural basis for DNase activity of a conserved protein implicated in CRISPR-mediated genome defense. Structure 17(6):904-912
-
(2009)
Structure
, vol.17
, Issue.6
, pp. 904-912
-
-
Wiedenheft, B.1
Zhou, K.2
Jinek, M.3
Coyle, S.M.4
Ma, W.5
Doudna, J.A.6
-
74
-
-
84861639567
-
Proteins and DNA elements essential for the CRISPR adaptation process in Escherichia coli
-
Yosef I, Goren MG, Qimron U (2012) Proteins and DNA elements essential for the CRISPR adaptation process in Escherichia coli. Nucleic Acids Res 40(12):5569-76
-
(2012)
Nucleic Acids Res
, vol.40
, Issue.12
, pp. 5569-5576
-
-
Yosef, I.1
Goren, M.G.2
Qimron, U.3
-
75
-
-
84861632698
-
Phage-induced expression of CRISPR-associated proteins is revealed by shotgun proteomics in Streptococcus thermophilus
-
Young JC, Dill BD, Pan C, Hettich RL, Banfield JF, Shah M, Fremaux C, Horvath P, Barrangou R, Verberkmoes NC (2012) Phage-induced expression of CRISPR-associated proteins is revealed by shotgun proteomics in Streptococcus thermophilus. PLoS ONE 7(5):e38077
-
(2012)
Plos ONE
, vol.7
, Issue.5
-
-
Young, J.C.1
Dill, B.D.2
Pan, C.3
Hettich, R.L.4
Banfield, J.F.5
Shah, M.6
Fremaux, C.7
Horvath, P.8
Barrangou, R.9
Verberkmoes, N.C.10
-
76
-
-
76649135130
-
Mycobacterium tuberculosis complex CRISPR genotyping: Improving efficiency, throughput and discriminative power of ‘spoligotyping’ with new spacers and a microbead-based hybridization assay
-
Zhang J, Abadia E, Refregier G, Tafaj S, Boschiroli ML, Guillard B, Andremont A, Ruimy R, Sola C (2010) Mycobacterium tuberculosis complex CRISPR genotyping: improving efficiency, throughput and discriminative power of ‘spoligotyping’ with new spacers and a microbead-based hybridization assay. J Med Microbiol 59:285-294
-
(2010)
J Med Microbiol
, vol.59
, pp. 285-294
-
-
Zhang, J.1
Abadia, E.2
Refregier, G.3
Tafaj, S.4
Boschiroli, M.L.5
Guillard, B.6
Remont, A.7
Ruimy, R.8
Sola, C.9
|