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Volumn 194, Issue 5, 2012, Pages 1216-1225

Nature and intensity of selection pressure on crispr-associated genes

Author keywords

[No Author keywords available]

Indexed keywords

ADAPTIVE IMMUNITY; ARCHAEAL GENE; ARTICLE; GENE CASSETTE; GENE CONTROL; GENE SEQUENCE; GENETIC CONSERVATION; GENETIC DATABASE; NONHUMAN; PRIORITY JOURNAL; PURIFYING SELECTION;

EID: 84857812156     PISSN: 00219193     EISSN: 10985530     Source Type: Journal    
DOI: 10.1128/JB.06521-11     Document Type: Article
Times cited : (83)

References (68)
  • 1
    • 79955435335 scopus 로고    scopus 로고
    • Clustered regularly interspaced short palindromic repeats (CRISPRs): the hallmark of an ingenious antiviral defense mechanism in prokaryotes
    • Al-Attar S, Westra ER, van der Oost J, Brouns SJ. 2011. Clustered regularly interspaced short palindromic repeats (CRISPRs): the hallmark of an ingenious antiviral defense mechanism in prokaryotes. Biol. Chem. 392:277-289.
    • (2011) Biol. Chem. , vol.392 , pp. 277-289
    • Al-Attar, S.1    Westra, E.R.2    van der Oost, J.3    Brouns, S.J.4
  • 3
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
    • Altschul SF, et al. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25:3389-3402.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 3389-3402
    • Altschul, S.F.1
  • 4
    • 44449133775 scopus 로고    scopus 로고
    • Virus population dynamics and ac-quired virus resistance in natural microbial communities
    • Andersson AF, Banfield JF. 2008. Virus population dynamics and ac-quired virus resistance in natural microbial communities. Science 320: 1047-1050.
    • (2008) Science , vol.320 , pp. 1047-1050
    • Andersson, A.F.1    Banfield, J.F.2
  • 5
    • 0042208362 scopus 로고    scopus 로고
    • Effect of recombination on the accuracy of the likelihood method for detecting positive selection at amino acid sites
    • Anisimova M, Nielsen R, Yang Z. 2003. Effect of recombination on the accuracy of the likelihood method for detecting positive selection at amino acid sites. Genetics 164:1229-1236.
    • (2003) Genetics , vol.164 , pp. 1229-1236
    • Anisimova, M.1    Nielsen, R.2    Yang, Z.3
  • 6
    • 78651083184 scopus 로고    scopus 로고
    • A dual function of the CRISPR-Cas system in bacterial antivirus immunity and DNA repair
    • Babu M, et al. 2011. A dual function of the CRISPR-Cas system in bacterial antivirus immunity and DNA repair. Mol. Microbiol. 79:484-502.
    • (2011) Mol. Microbiol. , vol.79 , pp. 484-502
    • Babu, M.1
  • 7
    • 34047118522 scopus 로고    scopus 로고
    • CRISPR provides acquired resistance against viruses in prokaryotes
    • Barrangou R, et al. 2007. CRISPR provides acquired resistance against viruses in prokaryotes. Science 315:1709-1712.
    • (2007) Science , vol.315 , pp. 1709-1712
    • Barrangou, R.1
  • 8
    • 49649120271 scopus 로고    scopus 로고
    • A novel family of sequence-specific endoribonucleases associated with the clustered regularly interspaced short palindromic repeats
    • Beloglazova N, et al. 2008. A novel family of sequence-specific endoribonucleases associated with the clustered regularly interspaced short palindromic repeats. J. Biol. Chem. 283:20361-20371.
    • (2008) J. Biol. Chem. , vol.283 , pp. 20361-20371
    • Beloglazova, N.1
  • 9
    • 34250757252 scopus 로고    scopus 로고
    • An exact nonparametric method for inferring mosaic structure in sequence triplets
    • Boni MF, Posada D, Feldman MW. 2007. An exact nonparametric method for inferring mosaic structure in sequence triplets. Genetics 176:1035-1047.
    • (2007) Genetics , vol.176 , pp. 1035-1047
    • Boni, M.F.1    Posada, D.2    Feldman, M.W.3
  • 10
    • 49649114086 scopus 로고    scopus 로고
    • Small CRISPR RNAs guide antiviral defense in prokaryotes
    • Brouns SJ, et al. 2008. Small CRISPR RNAs guide antiviral defense in prokaryotes. Science 321:960-964.
    • (2008) Science , vol.321 , pp. 960-964
    • Brouns, S.J.1
  • 11
    • 58049191229 scopus 로고    scopus 로고
    • Cas6 is an endoribonuclease that generates guide RNAs for invader defense in prokaryotes
    • Carte J, Wang R, Li H, Terns RM, Terns MP. 2008. Cas6 is an endoribonuclease that generates guide RNAs for invader defense in prokaryotes. Genes Dev. 22:3489-3496.
    • (2008) Genes Dev. , vol.22 , pp. 3489-3496
    • Carte, J.1    Wang, R.2    Li, H.3    Terns, R.M.4    Terns, M.P.5
  • 12
    • 77954423847 scopus 로고    scopus 로고
    • Comparative network clustering of direct repeats (DRs) and cas genes confirms the possibility of the horizontal transfer of CRISPR locus among bacteria
    • Chakraborty S, et al. 2010. Comparative network clustering of direct repeats (DRs) and cas genes confirms the possibility of the horizontal transfer of CRISPR locus among bacteria. Mol. Phylogenet. Evol. 56:878-887.
    • (2010) Mol. Phylogenet. Evol. , vol.56 , pp. 878-887
    • Chakraborty, S.1
  • 13
    • 79953250082 scopus 로고    scopus 로고
    • CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III
    • Deltcheva E, et al. 2011. CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III. Nature 471:602-607.
    • (2011) Nature , vol.471 , pp. 602-607
    • Deltcheva, E.1
  • 14
    • 38949123143 scopus 로고    scopus 로고
    • Phage response to CRISPR-encoded resistance in Streptococcus thermophilus
    • Deveau H, et al. 2008. Phage response to CRISPR-encoded resistance in Streptococcus thermophilus. J. Bacteriol. 190:1390-1400.
    • (2008) J. Bacteriol. , vol.190 , pp. 1390-1400
    • Deveau, H.1
  • 15
    • 0001277372 scopus 로고
    • Pairwise multiple comparisons in the unequal variance case
    • Dunnett CW. 1980. Pairwise multiple comparisons in the unequal variance case. J. Am. Stat. Assoc. 75:796-800.
    • (1980) J. Am. Stat. Assoc. , vol.75 , pp. 796-800
    • Dunnett, C.W.1
  • 16
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: multiple sequence alignment with high accuracy and high throughput
    • Edgar RC. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32:1792-1797.
    • (2004) Nucleic Acids Res. , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 17
    • 75549090603 scopus 로고    scopus 로고
    • The Pfam protein families database
    • Finn RD, et al. 2010. The Pfam protein families database. Nucleic Acids Res. 38:D211-D222.
    • (2010) Nucleic Acids Res. , vol.38
    • Finn, R.D.1
  • 18
    • 0033753825 scopus 로고    scopus 로고
    • Sister-scanning: a Monte Carlo procedure for assessing signals in recombinant sequences
    • Gibbs MJ, Armstrong JS, Gibbs AJ. 2000. Sister-scanning: a Monte Carlo procedure for assessing signals in recombinant sequences. Bioinformatics 16:573-582.
    • (2000) Bioinformatics , vol.16 , pp. 573-582
    • Gibbs, M.J.1    Armstrong, J.S.2    Gibbs, A.J.3
  • 19
    • 33744941078 scopus 로고    scopus 로고
    • The repetitive DNA elements called CRISPRs and their associated genes: evidence of horizontal transfer among prokaryotes
    • Godde JS, Bickerton A. 2006. The repetitive DNA elements called CRISPRs and their associated genes: evidence of horizontal transfer among prokaryotes. J. Mol. Evol. 62:718-729.
    • (2006) J. Mol. Evol. , vol.62 , pp. 718-729
    • Godde, J.S.1    Bickerton, A.2
  • 20
    • 79953281735 scopus 로고    scopus 로고
    • Bacteria-phage antagonistic coevolution in soil
    • Gomez P, Buckling A. 2011. Bacteria-phage antagonistic coevolution in soil. Science 332:106-109.
    • (2011) Science , vol.332 , pp. 106-109
    • Gomez, P.1    Buckling, A.2
  • 21
    • 77950806408 scopus 로고    scopus 로고
    • New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0
    • Guindon S, et al. 2010. New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst. Biol. 59:307-321.
    • (2010) Syst. Biol. , vol.59 , pp. 307-321
    • Guindon, S.1
  • 22
    • 34248400310 scopus 로고    scopus 로고
    • A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes
    • Haft DH, Selengut J, Mongodin EF, Nelson KE. 2005. A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes. PLoS. Comput. Biol. 1:e60.
    • (2005) PLoS. Comput. Biol. , vol.1
    • Haft, D.H.1    Selengut, J.2    Mongodin, E.F.3    Nelson, K.E.4
  • 23
    • 70449753811 scopus 로고    scopus 로고
    • RNA-guided RNA cleavage by a CRISPR RNA-Cas protein complex
    • Hale CR, et al. 2009. RNA-guided RNA cleavage by a CRISPR RNA-Cas protein complex. Cell 139:945-956.
    • (2009) Cell , vol.139 , pp. 945-956
    • Hale, C.R.1
  • 24
    • 77956498326 scopus 로고    scopus 로고
    • Sequence- and structure-specific RNA processing by a CRISPR endonuclease
    • Haurwitz RE, Jinek M, Wiedenheft B, Zhou K, Doudna JA. 2010. Sequence- and structure-specific RNA processing by a CRISPR endonuclease. Science 329:1355-1358.
    • (2010) Science , vol.329 , pp. 1355-1358
    • Haurwitz, R.E.1    Jinek, M.2    Wiedenheft, B.3    Zhou, K.4    Doudna, J.A.5
  • 25
    • 0002294347 scopus 로고
    • A simple sequentially rejective multiple test procedure
    • Holm S. 1979. A simple sequentially rejective multiple test procedure. Scand. J. Stat. 6:65-70.
    • (1979) Scand. J. Stat. , vol.6 , pp. 65-70
    • Holm, S.1
  • 26
    • 74249095519 scopus 로고    scopus 로고
    • CRISPR/Cas, the immune system of bacteria and archaea
    • Horvath P, Barrangou R. 2010. CRISPR/Cas, the immune system of bacteria and archaea. Science 327:167-170.
    • (2010) Science , vol.327 , pp. 167-170
    • Horvath, P.1    Barrangou, R.2
  • 27
    • 79955574254 scopus 로고    scopus 로고
    • Structural basis for CRISPR RNA-guided DNA recognition by Cascade
    • Jore MM, et al. 2011. Structural basis for CRISPR RNA-guided DNA recognition by Cascade. Nat. Struct. Mol. Biol. 18:529-536.
    • (2011) Nat. Struct. Mol. Biol. , vol.18 , pp. 529-536
    • Jore, M.M.1
  • 28
    • 77649218943 scopus 로고    scopus 로고
    • Is evolution Darwinian or/and Lamarckian? Biol
    • Koonin EV, Wolf YI. 2009. Is evolution Darwinian or/and Lamarckian? Biol. Direct 4:42.
    • (2009) Direct , vol.4 , pp. 42
    • Koonin, E.V.1    Wolf, Y.I.2
  • 30
    • 0142124263 scopus 로고    scopus 로고
    • Gene loss, protein sequence divergence, gene dispensability, expression level, and interactivity are correlated in eukaryotic evolution
    • Krylov DM, Wolf YI, Rogozin IB, Koonin EV. 2003. Gene loss, protein sequence divergence, gene dispensability, expression level, and interactivity are correlated in eukaryotic evolution. Genome Res. 13:2229-2235.
    • (2003) Genome Res. , vol.13 , pp. 2229-2235
    • Krylov, D.M.1    Wolf, Y.I.2    Rogozin, I.B.3    Koonin, E.V.4
  • 31
    • 0003421005 scopus 로고    scopus 로고
    • Sinauer Associates, Sunderland, MA
    • Li W.-H. 1997. Molecular evolution. Sinauer Associates, Sunderland, MA.
    • (1997) Molecular evolution
    • Li, W.-H.1
  • 32
    • 79958754524 scopus 로고    scopus 로고
    • Structural and functional characterization of an archaeal clustered regularly interspaced short palindromic repeat (CRISPR)-associated complex for antiviral defense (CASCADE)
    • Lintner NG, et al. 2011. Structural and functional characterization of an archaeal clustered regularly interspaced short palindromic repeat (CRISPR)-associated complex for antiviral defense (CASCADE). J. Biol. Chem. 286:21643-21656.
    • (2011) J. Biol. Chem. , vol.286 , pp. 21643-21656
    • Lintner, N.G.1
  • 33
    • 79960554003 scopus 로고    scopus 로고
    • Unification of Cas protein families and a simple scenario for the origin and evolution of CRISPR-Cas systems
    • Makarova KS, Aravind L, Wolf YI, Koonin EV. 2011. Unification of Cas protein families and a simple scenario for the origin and evolution of CRISPR-Cas systems. Biol. Direct. 6:38.
    • (2011) Biol. Direct. , vol.6 , pp. 38
    • Makarova, K.S.1    Aravind, L.2    Wolf, Y.I.3    Koonin, E.V.4
  • 34
    • 34248374277 scopus 로고    scopus 로고
    • A putative RNA-interference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action
    • Makarova KS, Grishin NV, Shabalina SA, Wolf YI, Koonin EV. 2006. A putative RNA-interference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action. Biol. Direct. 1:7.
    • (2006) Biol. Direct. , vol.1 , pp. 7
    • Makarova, K.S.1    Grishin, N.V.2    Shabalina, S.A.3    Wolf, Y.I.4    Koonin, E.V.5
  • 35
    • 79956157571 scopus 로고    scopus 로고
    • Evolution and classification of the CRISPR-Cas systems
    • Makarova KS, et al. 2011. Evolution and classification of the CRISPR-Cas systems. Nat. Rev. Microbiol. 9:467-477.
    • (2011) Nat. Rev. Microbiol. , vol.9 , pp. 467-477
    • Makarova, K.S.1
  • 36
  • 37
    • 57849137502 scopus 로고    scopus 로고
    • CRISPR interference limits horizontal gene transfer in staphylococci by targeting DNA
    • Marraffini LA, Sontheimer EJ. 2008. CRISPR interference limits horizontal gene transfer in staphylococci by targeting DNA. Science 322:1843-1845.
    • (2008) Science , vol.322 , pp. 1843-1845
    • Marraffini, L.A.1    Sontheimer, E.J.2
  • 38
    • 77249170201 scopus 로고    scopus 로고
    • CRISPR interference: RNA-directed adaptive immunity in bacteria and archaea
    • Marraffini LA, Sontheimer EJ. 2010. CRISPR interference: RNA-directed adaptive immunity in bacteria and archaea. Nat. Rev. Genet. 11:181-190.
    • (2010) Nat. Rev. Genet. , vol.11 , pp. 181-190
    • Marraffini, L.A.1    Sontheimer, E.J.2
  • 39
    • 66349095372 scopus 로고    scopus 로고
    • Invasive DNA, chopped and in the CRISPR
    • Marraffini LA, Sontheimer EJ. 2009. Invasive DNA, chopped and in the CRISPR. Structure 17:786-788.
    • (2009) Structure , vol.17 , pp. 786-788
    • Marraffini, L.A.1    Sontheimer, E.J.2
  • 40
    • 75749118174 scopus 로고    scopus 로고
    • Self versus non-self discrimination during CRISPR RNA-directed immunity
    • Marraffini LA, Sontheimer EJ. 2010. Self versus non-self discrimination during CRISPR RNA-directed immunity. Nature 463:568-571.
    • (2010) Nature , vol.463 , pp. 568-571
    • Marraffini, L.A.1    Sontheimer, E.J.2
  • 41
    • 0033824415 scopus 로고    scopus 로고
    • RDP: detection of recombination amongst aligned sequences
    • Martin D, Rybicki E. 2000. RDP: detection of recombination amongst aligned sequences. Bioinformatics 16:562-563.
    • (2000) Bioinformatics , vol.16 , pp. 562-563
    • Martin, D.1    Rybicki, E.2
  • 42
    • 77957243284 scopus 로고    scopus 로고
    • RDP3: a flexible and fast computer program for analyzing recombination
    • Martin DP, et al. 2010. RDP3: a flexible and fast computer program for analyzing recombination. Bioinformatics 26:2462-2463.
    • (2010) Bioinformatics , vol.26 , pp. 2462-2463
    • Martin, D.P.1
  • 43
    • 13144283628 scopus 로고    scopus 로고
    • A modified bootscan algorithm for automated identification of recombinant sequences and recombination breakpoints
    • Martin DP, Posada D, Crandall KA, Williamson C. 2005. A modified bootscan algorithm for automated identification of recombinant sequences and recombination breakpoints. AIDS Res. Hum. Retrovir. 21:98-102.
    • (2005) AIDS Res. Hum. Retrovir. , vol.21 , pp. 98-102
    • Martin, D.P.1    Posada, D.2    Crandall, K.A.3    Williamson, C.4
  • 44
    • 0026708873 scopus 로고
    • Analyzing the mosaic structure of genes
    • Maynard Smith J. 1992. Analyzing the mosaic structure of genes. J. Mol. Evol. 34:126-129.
    • (1992) J. Mol. Evol. , vol.34 , pp. 126-129
    • Maynard Smith, J.1
  • 45
    • 64049118040 scopus 로고    scopus 로고
    • Short motif sequences determine the targets of the prokaryotic CRISPR defence system
    • Mojica FJ, Diez-Villasenor C, Garcia-Martinez J, Almendros C. 2009. Short motif sequences determine the targets of the prokaryotic CRISPR defence system. Microbiology 155:733-740.
    • (2009) Microbiology , vol.155 , pp. 733-740
    • Mojica, F.J.1    Diez-Villasenor, C.2    Garcia-Martinez, J.3    Almendros, C.4
  • 46
    • 58149179978 scopus 로고    scopus 로고
    • ATGC: a database of orthologous genes from closely related prokaryotic genomes and a research platform for microevolution of prokaryotes
    • Novichkov PS, Ratnere I, Wolf YI, Koonin EV, Dubchak I. 2009. ATGC: a database of orthologous genes from closely related prokaryotic genomes and a research platform for microevolution of prokaryotes. Nucleic Acids Res. 37:D448-D454.
    • (2009) Nucleic Acids Res. , vol.37
    • Novichkov, P.S.1    Ratnere, I.2    Wolf, Y.I.3    Koonin, E.V.4    Dubchak, I.5
  • 47
    • 58149492429 scopus 로고    scopus 로고
    • Trends in prokaryotic evolution revealed by comparison of closely related bacterial and archaeal genomes
    • Novichkov PS, Wolf YI, Dubchak I, Koonin EV. 2009. Trends in prokaryotic evolution revealed by comparison of closely related bacterial and archaeal genomes. J. Bacteriol. 191:65-73.
    • (2009) J. Bacteriol. , vol.191 , pp. 65-73
    • Novichkov, P.S.1    Wolf, Y.I.2    Dubchak, I.3    Koonin, E.V.4
  • 48
    • 0033590220 scopus 로고    scopus 로고
    • Possible emergence of new geminiviruses by frequent recombination
    • Padidam M, Sawyer S, Fauquet CM. 1999. Possible emergence of new geminiviruses by frequent recombination. Virology 265:218-225.
    • (1999) Virology , vol.265 , pp. 218-225
    • Padidam, M.1    Sawyer, S.2    Fauquet, C.M.3
  • 49
    • 77949423965 scopus 로고    scopus 로고
    • Antagonistic coevolution accelerates molecular evolution
    • Paterson S, et al. 2010. Antagonistic coevolution accelerates molecular evolution. Nature 464:275-278.
    • (2010) Nature , vol.464 , pp. 275-278
    • Paterson, S.1
  • 50
    • 17744395033 scopus 로고    scopus 로고
    • Datamonkey: rapid detection of selective pressure on individual sites of codon alignments
    • Pond SL, Frost SD. 2005. Datamonkey: rapid detection of selective pressure on individual sites of codon alignments. Bioinformatics 21:2531-2533.
    • (2005) Bioinformatics , vol.21 , pp. 2531-2533
    • Pond, S.L.1    Frost, S.D.2
  • 51
    • 0035923699 scopus 로고    scopus 로고
    • Evaluation of methods for detecting recombination from DNA sequences: computer simulations
    • Posada D, Crandall KA. 2001. Evaluation of methods for detecting recombination from DNA sequences: computer simulations. Proc. Natl. Acad. Sci. U. S. A. 98:13757-13762.
    • (2001) Proc. Natl. Acad. Sci. U. S. A. , vol.98 , pp. 13757-13762
    • Posada, D.1    Crandall, K.A.2
  • 52
    • 0034201441 scopus 로고    scopus 로고
    • EMBOSS: the European Molecular Biology Open Software Suite
    • Rice P, Longden I, Bleasby A. 2000. EMBOSS: the European Molecular Biology Open Software Suite. Trends Genet. 16:276-277.
    • (2000) Trends Genet , vol.16 , pp. 276-277
    • Rice, P.1    Longden, I.2    Bleasby, A.3
  • 53
    • 66149108791 scopus 로고    scopus 로고
    • X-ray crystal structure of a CRISPR-associated RAMPCmr5 protein from Thermus thermophilus HB8
    • Sakamoto K, et al. 2009. X-ray crystal structure of a CRISPR-associated RAMPCmr5 protein from Thermus thermophilus HB8. Proteins 75:528-532.
    • (2009) Proteins , vol.75 , pp. 528-532
    • Sakamoto, K.1
  • 54
    • 58149200954 scopus 로고    scopus 로고
    • Database resources of the National Center for Biotechnology Information
    • Sayers EW, et al. 2009. Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 37:D5-D15.
    • (2009) Nucleic Acids Res. , vol.37
    • Sayers, E.W.1
  • 55
    • 33846113652 scopus 로고    scopus 로고
    • TIGRFAMs and genome properties: tools for the assignment of molecular function and biological process in prokaryotic genomes
    • Selengut JD, et al. 2007. TIGRFAMs and genome properties: tools for the assignment of molecular function and biological process in prokaryotic genomes. Nucleic Acids Res. 35:D260-D264.
    • (2007) Nucleic Acids Res. , vol.35
    • Selengut, J.D.1
  • 56
    • 0037986694 scopus 로고    scopus 로고
    • Potential impact of recombination on sitewise approaches for detecting positive natural selection
    • Shriner D, Nickle DC, Jensen MA, Mullins JI. 2003. Potential impact of recombination on sitewise approaches for detecting positive natural selection. Genet. Res. 81:115-121.
    • (2003) Genet. Res. , vol.81 , pp. 115-121
    • Shriner, D.1    Nickle, D.C.2    Jensen, M.A.3    Mullins, J.I.4
  • 57
    • 79953779608 scopus 로고    scopus 로고
    • Cas3 is a single-stranded DNA nuclease and ATP-dependent helicase in the CRISPR/Cas immune system
    • Sinkunas T, et al. 2011. Cas3 is a single-stranded DNA nuclease and ATP-dependent helicase in the CRISPR/Cas immune system. EMBO J. 30:1335-1342.
    • (2011) EMBO J. , vol.30 , pp. 1335-1342
    • Sinkunas, T.1
  • 58
    • 77955085897 scopus 로고    scopus 로고
    • Self-targeting by CRISPR: gene regulation or autoimmunity?
    • Stern A, Keren L, Wurtzel O, Amitai G, Sorek R. 2010. Self-targeting by CRISPR: gene regulation or autoimmunity? Trends Genet. 26:335-340.
    • (2010) Trends Genet , vol.26 , pp. 335-340
    • Stern, A.1    Keren, L.2    Wurtzel, O.3    Amitai, G.4    Sorek, R.5
  • 59
    • 0042902833 scopus 로고    scopus 로고
    • The COG database: an updated version includes eukaryotes
    • Tatusov RL, et al. 2003. The COG database: an updated version includes eukaryotes. BMC Bioinformatics 4:41.
    • (2003) BMC Bioinformatics , vol.4 , pp. 41
    • Tatusov, R.L.1
  • 60
    • 79956154321 scopus 로고    scopus 로고
    • CRISPR distribution within the Escherichia coli species is not suggestive of immunity-associated diversifying selection
    • Touchon M, et al. 2011. CRISPR distribution within the Escherichia coli species is not suggestive of immunity-associated diversifying selection. J. Bacteriol. 193:2460-2467.
    • (2011) J. Bacteriol. , vol.193 , pp. 2460-2467
    • Touchon, M.1
  • 61
    • 77956213914 scopus 로고    scopus 로고
    • The small, slow and specialized CRISPR and anti-CRISPR of Escherichia and Salmonella
    • Touchon M, Rocha EP. 2010. The small, slow and specialized CRISPR and anti-CRISPR of Escherichia and Salmonella. PLoS One 5:e11126.
    • (2010) PLoS One , vol.5
    • Touchon, M.1    Rocha, E.P.2
  • 62
    • 38149061877 scopus 로고    scopus 로고
    • Rapidly evolving CRISPRs implicated in acquired resistance of microorganisms to viruses
    • Tyson GW, Banfield JF. 2008. Rapidly evolving CRISPRs implicated in acquired resistance of microorganisms to viruses. Environ. Microbiol. 10:200-207.
    • (2008) Environ. Microbiol. , vol.10 , pp. 200-207
    • Tyson, G.W.1    Banfield, J.F.2
  • 63
    • 79551694059 scopus 로고    scopus 로고
    • Interaction of the Cas6 riboendonuclease with CRISPR RNAs: recognition and cleavage
    • Wang R, Preamplume G, Terns MP, Terns RM, Li H. 2011. Interaction of the Cas6 riboendonuclease with CRISPR RNAs: recognition and cleavage. Structure 19:257-264.
    • (2011) Structure , vol.19 , pp. 257-264
    • Wang, R.1    Preamplume, G.2    Terns, M.P.3    Terns, R.M.4    Li, H.5
  • 64
    • 80053169737 scopus 로고    scopus 로고
    • Structures of the RNA-guided surveillance complex from a bacterial immune system
    • Wiedenheft B, et al. 2011. Structures of the RNA-guided surveillance complex from a bacterial immune system. Nature 477:486-489.
    • (2011) Nature , vol.477 , pp. 486-489
    • Wiedenheft, B.1
  • 65
    • 66349134987 scopus 로고    scopus 로고
    • Structural basis for DNase activity of a conserved protein implicated in CRISPR-mediated genome defense
    • Wiedenheft B, et al. 2009. Structural basis for DNase activity of a conserved protein implicated in CRISPR-mediated genome defense. Structure 17:904-912.
    • (2009) Structure , vol.17 , pp. 904-912
    • Wiedenheft, B.1
  • 66
    • 0032830481 scopus 로고    scopus 로고
    • Evolution of aminoacyl-tRNA synthetases-analysis of unique domain architectures and phylogenetic trees reveals a complex history of horizontal gene transfer events
    • Wolf YI, Aravind L, Grishin NV, Koonin EV. 1999. Evolution of aminoacyl-tRNA synthetases-analysis of unique domain architectures and phylogenetic trees reveals a complex history of horizontal gene transfer events. Genome Res. 9:689-710.
    • (1999) Genome Res. , vol.9 , pp. 689-710
    • Wolf, Y.I.1    Aravind, L.2    Grishin, N.V.3    Koonin, E.V.4
  • 67
    • 34547803197 scopus 로고    scopus 로고
    • PAML 4: phylogenetic analysis by maximum likelihood
    • Yang Z. 2007. PAML 4: phylogenetic analysis by maximum likelihood. Mol. Biol. Evol. 24:1586-1591.
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 1586-1591
    • Yang, Z.1
  • 68
    • 0033639150 scopus 로고    scopus 로고
    • Statistical methods for detecting molecular adaptation
    • Yang Z, Bielawski JP. 2000. Statistical methods for detecting molecular adaptation. Trends Ecol. Evol. 15:496-503.
    • (2000) Trends Ecol. Evol. , vol.15 , pp. 496-503
    • Yang, Z.1    Bielawski, J.P.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.