SSO1450 - A CAS1 protein from Sulfolobus solfataricus P2 with high affinity for RNA and DNA

FEBS Letters

Volumn 583, Issue 12, 2009, Pages 1928-1932

  Han, Dong ^a   Lehmann, Kathleen ^a   Krauss, Gerhard ^a  

^a UNIVERSITY OF BAYREUTH   (Germany)

Author keywords

CRISPR; CRISPR associated; Nucleic acid binding; SSO1450

Indexed keywords

NUCLEIC ACID BINDING PROTEIN; PROTEIN CAS1; PROTEIN SSO1450; UNCLASSIFIED DRUG;

AMINO ACID SEQUENCE; ARTICLE; BACTERIAL STRAIN; BINDING AFFINITY; BINDING SITE; CONTROLLED STUDY; DNA RNA HYBRIDIZATION; NONHUMAN; NUCLEIC ACID HYBRIDIZATION; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN DNA BINDING; PROTEIN FUNCTION; PROTEIN RNA BINDING; SEQUENCE ANALYSIS; SULFOLOBUS SOLFATARICUS;

ARCHAEAL PROTEINS; BASE SEQUENCE; CHROMOSOME MAPPING; DIMERIZATION; DNA PRIMERS; DNA, ARCHAEAL; DNA-BINDING PROTEINS; FLUORESCENCE POLARIZATION; GENES, ARCHAEAL; INVERTED REPEAT SEQUENCES; MULTIGENE FAMILY; NUCLEIC ACID HYBRIDIZATION; PROTEIN STRUCTURE, QUATERNARY; RNA, ARCHAEAL; RNA-BINDING PROTEINS; SULFOLOBUS SOLFATARICUS;

BACTERIA (MICROORGANISMS); SULFOLOBUS SOLFATARICUS;

EID: 67349235333     PISSN: 00145793     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.febslet.2009.04.047     Document Type: Article

References (25)

1. Godde J.S., and Bickerton A. The repetitive DNA elements called CRISPRs and their associated genes: evidence of horizontal transfer among prokaryotes. J. Mol. Evol. 62 (2006) 718-729
2. Jansen R., Embden J.D., Gaastra W., and Schouls L.M. Identification of genes that are associated with DNA repeats in prokaryotes. Mol. Microbiol. 43 (2002) 1565-1575
3. Lillestol R.K., Redder P., Garrett R.A., and Brugger K. A putative viral defence mechanism in archaeal cells. Archaea 2 (2006) 59-72
4. Mojica F.J., ez-Villasenor C., Garcia-Martinez J., and Soria E. Intervening sequences of regularly spaced prokaryotic repeats derive from foreign genetic elements. J. Mol. Evol. 60 (2005) 174-182
5. Tyson G.W., and Banfield J.F. Rapidly evolving CRISPRs implicated in acquired resistance of microorganisms to viruses. Environ. Microbiol. 10 (2008) 200-207
6. Makarova K.S., Aravind L., Grishin N.V., Rogozin I.B., and Koonin E.V. A DNA repair system specific for thermophilic Archaea and bacteria predicted by genomic context analysis. Nucleic Acids Res. 30 (2002) 482-496
7. Makarova K.S., Grishin N.V., Shabalina S.A., Wolf Y.I., and Koonin E.V. A putative RNA-interference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action. Biol. Direct. 1 (2006) 7
8. Barrangou R., Fremaux C., Deveau H., Richards M., Boyaval P., Moineau S., Romero D.A., and Horvath P. CRISPR provides acquired resistance against viruses in prokaryotes. Science 315 (2007) 1709-1712
9. Marraffini L.A., and Sontheimer E.J. CRISPR interference limits horizontal gene transfer in staphylococci by targeting DNA. Science 322 (2008) 1843-1845
10. Sorek R., Kunin V., and Hugenholtz P. CRISPR - a widespread system that provides acquired resistance against phages in bacteria and archaea. Nat. Rev. Microbiol. 6 (2008) 181-186
11. Marx J. Microbiology. New bacterial defense against phage invaders identified. Science 315 (2007) 1650-1651
12. Carte J., Wang R., Li H., Terns R.M., and Terns M.P. Cas6 is an endoribonuclease that generates guide RNAs for invader defense in prokaryotes. Genes Dev. 22 (2008) 3489-3496
13. Brouns S.J., Jore M.M., Lundgren M., Westra E.R., Slijkhuis R.J., Snijders A.P., Dickman M.J., Makarova K.S., Koonin E.V., and Van der O.J. Small CRISPR RNAs guide antiviral defense in prokaryotes. Science 321 (2008) 960-964
14. Beloglazova N., Brown G., Zimmerman M.D., Proudfoot M., Makarova K.S., Kudritska M., Kochinyan S., Wang S., Chruszcz M., Minor W., Koonin E.V., Edwards A.M., Savchenko A., and Yakunin A.F. A novel family of sequence-specific endoribonucleases associated with the clustered regularly interspaced short palindromic repeats. J. Biol. Chem. 283 (2008) 20361-20371
15. Han D., and Krauss G. Characterization of the endonuclease SSO2001 from Sulfolobus solfataricus P2. FEBS Lett. 583 (2009) 771-776
16. Hey T., Lipps G., and Krauss G. Binding of XPA and RPA to damaged DNA investigated by fluorescence anisotropy. Biochemistry 40 (2001) 2901-2910
17. Kernchen U., and Lipps G. Thermodynamic analysis of the single-stranded DNA binding activity of the archaeal replication protein A (RPA) from Sulfolobus solfataricus. Biochemistry 45 (2006) 594-603
18. Yang W., and Gregory D.V.D. Protein-nucleic acid interactions. Curr. Opin. Struct. Biol. 2004 14 (2004) 1-3
19. Tsang S.S., Chow S.A., and Radding C.M. Networks of DNA and RecA protein are intermediates in homologous pairing. Biochemistry 24 (1985) 3226-3232
20. Bryant F.R., and Lehman I.R. On the mechanism of renaturation of complementary DNA strands by the recA protein of Escherichia coli. Proc. Natl. Acad. Sci. USA 82 (1985) 297-301
21. Bryant F.R., and Lehman I.R. ATP-independent renaturation of complementary DNA strands by the mutant recA1 protein from Escherichia coli. J. Biol. Chem. 261 (1986) 12988-12993
22. Haft D.H., Selengut J., Mongodin E.F., and Nelson K.E. A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes. PLoS Comput. Biol. 1 (2005) 474-483
23. Sauvageau S., Stasiak A.Z., Banville I., Ploquin M., Stasiak A., and Masson J.Y. Fission yeast rad51 and dmc1, two efficient DNA recombinases forming helical nucleoprotein filaments. Mol. Cell Biol. 25 (2005) 4377-4387
24. Heyer W.D., Evans D.H., and Kolodner R.D. Renaturation of DNA by a Saccharomyces cerevisiae protein that catalyzes homologous pairing and strand exchange. J. Biol. Chem. 263 (1988) 15189-15195
25. Makhov A.M., and Griffith J.D. Visualization of the annealing of complementary single-stranded DNA catalyzed by the herpes simplex virus type 1 ICP8 SSB/recombinase. J. Mol. Biol. 355 (2006) 911-922