Biphasic microreactor for efficient membrane protein pretreatment with a combination of formic acid assisted solubilization, on-column pH adjustment, reduction, alkylation, and tryptic digestion

Analytical Chemistry

Volumn 85, Issue 18, 2013, Pages 8507-8512

  Zhao, Qun ^a,b   Liang, Yu ^a   Yuan, Huiming ^a   Sui, Zhigang ^a   Wu, Qi ^a,b   Liang, Zhen ^a   Zhang, Lihua ^a   Zhang, Yukui ^a  

^a DALIAN INSTITUTE OF CHEMICAL PHYSICS   (China)

^b INSTITUTE OF GEOLOGY AND GEOPHYSICS   (China)

Author keywords

[No Author keywords available]

Indexed keywords

BOVINE SERUM ALBUMINS; INTEGRAL MEMBRANE PROTEINS; PRE-CONCENTRATION; RETENTION BEHAVIOR; SAMPLE PREPARATION; STRONG ANION EXCHANGES; STRONG CATION EXCHANGES; TANDEM MASS SPECTROMETRY;

ALKYLATION; CHEMICAL REACTORS; ELECTROSPRAY IONIZATION; FORMIC ACID; MASS SPECTROMETRY; MOLECULAR BIOLOGY; PEPTIDES;

BIOLOGICAL MEMBRANES;

FORMIC ACID; FORMIC ACID DERIVATIVE; MEMBRANE PROTEIN; TRYPSIN;

ALKYLATION; ANIMAL; ARTICLE; CATTLE; CHEMISTRY; ELECTROSPRAY MASS SPECTROMETRY; LIQUID CHROMATOGRAPHY; MALE; METABOLISM; METHODOLOGY; OXIDATION REDUCTION REACTION; PH; PHYSIOLOGY; RAT; SOLUBILITY; SPRAGUE DAWLEY RAT; TANDEM MASS SPECTROMETRY;

ALKYLATION; ANIMALS; CATTLE; CHROMATOGRAPHY, LIQUID; FORMATES; HYDROGEN-ION CONCENTRATION; MALE; MEMBRANE PROTEINS; OXIDATION-REDUCTION; RATS; RATS, SPRAGUE-DAWLEY; SOLUBILITY; SPECTROMETRY, MASS, ELECTROSPRAY IONIZATION; TANDEM MASS SPECTROMETRY; TRYPSIN;

EID: 84884260359     PISSN: 00032700     EISSN: 15206882     Source Type: Journal    
DOI: 10.1021/ac402076u     Document Type: Article

References (43)

1. Wu, C. C.; Yates, J. R., 3rd. Nat. Biotechnol. 2003, 21, 262-267
2. Groen, A. J.; Lilley, K. S. Expert Rev. Proteomics 2010, 7, 867-878
3. Speers, A. E.; Wu, C. C. Chem. Rev. 2007, 107, 3687-3714
4. Catherman, A. D.; Li, M. X.; Tran, J. C.; Durbin, K. R.; Compton, P. D.; Early, B. P.; Thomas, P. M.; Kelleher, N. L. Anal. Chem. 2013, 85, 1880-1888
5. Whitelegge, J. P. Anal. Chem. 2013, 85, 2558-2568
6. Ye, X. X.; Li, L. Anal. Chem. 2012, 84, 6181-6191
7. Wu, C. C.; MacCoss, M. J.; Howell, K. E.; Yates, J. R., 3rd. Nat. Biotechnol. 2003, 21, 532-538
8. Yu, Y. B.; Xie, L.; Gunawardena, H. P.; Khatun, J.; Maier, C.; Spitzer, W.; Leerkes, M.; Giddings, M. C.; Chen, X. Anal. Chem. 2012, 84, 9008-9014
9. Sun, D.; Wang, N.; Li, L. J. Proteome Res. 2012, 11, 818-828
10. Masuda, T.; Tomita, M.; Ishihama, Y. J. Proteome Res. 2008, 7, 731-740
11. Chen, F.; Gerber, S.; Heuser, K.; Korkhov, V. M.; Lizak, C.; Mireku, S.; Locher, K. P.; Zenobi, R. Anal. Chem. 2013, 85, 3483-3488
12. Blonder, J.; Chan, K. C.; Issaq, H. J.; Veenstra, T. D. Nat. Protoc. 2006, 1, 2784-2790
13. Zhang, N.; Chen, R.; Young, N.; Wishart, D.; Winter, P.; Weiner, J. H.; Li, L. Proteomics 2007, 7, 484-493
14. Ma, J. F.; Hou, C. Y.; Sun, L. L.; Tao, D. Y.; Zhang, Y. Y.; Shan, Y. C.; Liang, Z.; Zhang, L. H.; Yang, L.; Zhang, Y. K. Anal. Chem. 2010, 82, 9622-9625
15. Washburn, M. P.; Wolters, D.; Yates, J. R., 3rd. Nat. Biotechnol. 2001, 19, 242-247
16. Rietschel, B.; Bornemann, S.; Arrey, T. N.; Baeumlisberger, D.; Karas, M.; Meyer, B. Proteomics 2009, 9, 5553-5557
17. Da Cruz, S.; Xenarios, I.; Langridge, J.; Vilbois, F.; Parone, P. A.; Martinou, J. C. J. Biol. Chem. 2003, 278, 41566-41571
18. Wolters, D. A.; Washburn, M. P.; Yates, J. R., 3rd. Anal. Chem. 2001, 73, 5683-5690
19. Han, J.; Schey, K. L. J. Proteome Res. 2004, 3, 807-812
20. Lopez-Ferrer, D.; Petritis, K.; Robinson, E. W.; Hixson, K. K.; Tian, Z.; Lee, J. H.; Lee, S. W.; Tolic, N.; Weitz, K. K.; Belov, M. E.; Smith, R. D.; Pasa-Tolic, L. Mol. Cell. Proteomics 2011, 10, M110 001479
21. Jaskolla, T. W.; Papasotiriou, D. G.; Karas, M. J. Proteome Res. 2009, 8, 3588-3597
22. Zhu, J.; Wang, F. J.; Chen, R.; Cheng, K.; Xu, B.; Guo, Z. M.; Liang, X. M.; Ye, M. L.; Zou, H. F. Anal. Chem. 2012, 84, 5146-5153
23. Shevchenko, G.; Musunuri, S.; Wetterhall, M.; Bergquist, J. J. Proteome Res. 2012, 11, 2441-2451
24. Wisniewski, J. R.; Mann, M. Anal. Chem. 2012, 84, 2631-2637
25. Sun, L. L.; Zhu, G. J.; Li, Y. H.; Yang, P.; Dovichi, N. J. Anal. Chem. 2012, 84, 8715-8721
26. Tian, R. J.; Hoa, X. D.; Lambert, J. P.; Pezacki, J. P.; Veres, T.; Figeys, D. Anal. Chem. 2011, 83, 4095-4102
27. Zhou, H.; Hou, W. M.; Lambert, J. P.; Tian, R. J.; Figeys, D. Talanta 2010, 80, 1526-1531
28. Tian, R. J.; Wang, S.; Elisma, F.; Li, L.; Zhou, H.; Wang, L. S.; Figeys, D. Mol. Cell. Proteomics 2011, 10, M110 000679
29. Zhou, H.; Wang, F. J.; Wang, Y. W.; Ning, Z. B.; Hou, W. M.; Wright, T. G.; Sundaram, M.; Zhong, S. M.; Yao, Z. M.; Figeys, D. Mol. Cell. Proteomics 2011, 10, O111 008425
30. Vuckovic, D.; Dagley, L. F.; Purcell, A. W.; Emili, A. Proteomics 2013, 13, 404-423
31. Zhao, Q.; Sun, L. L.; Liang, Y.; Wu, Q.; Yuan, H. M.; Liang, Z.; Zhang, L. H.; Zhang, Y. K. Talanta 2012, 88, 567-572
32. Jiang, H.; Yuan, H. M.; Liang, Y.; Xia, S. M.; Zhao, Q.; Wu, Q.; Zhang, L. H.; Liang, Z.; Zhang, Y. K. J. Chromatogr., A 2012, 1246, 111-116
33. Li, D. Q.; Fu, Y.; Sun, R. X.; Ling, C. X.; Wei, Y. G.; Zhou, H.; Zeng, R.; Yang, Q.; He, S. M.; Gao, W. Bioinformatics 2005, 21, 3049-3050
34. Keller, A.; Nesvizhskii, A. I.; Kolker, E.; Aebersold, R. Anal. Chem. 2002, 74, 5383-5392
35. Elias, J. E.; Gygi, S. P. Nat. Methods 2007, 4, 207-214
36. Blonder, J.; Goshe, M. B.; Moore, R. J.; Pasa-Tolic, L.; Masselon, C. D.; Lipton, M. S.; Smith, R. D. J. Proteome Res. 2002, 1, 351-360
37. Zhang, H. M.; Lin, Q. S.; Ponnusamy, S.; Kothandaraman, N.; Lim, T. K.; Zhao, C. Q.; Kit, H. S.; Arijit, B.; Rauff, M.; Hew, C. L.; Chung, M. C.; Joshi, S. B.; Choolani, M. Proteomics 2007, 7, 1654-1663
38. Wang, F. J.; Dong, J.; Jiang, X. G.; Ye, M. L.; Zou, H. F. Anal. Chem. 2007, 79, 6599-6606
39. Wang, N.; Xie, C. H.; Young, J. B.; Li, L. Anal. Chem. 2009, 81, 1049-1060
40. Krogh, A.; Larsson, B.; von Heijne, G.; Sonnhammer, E. L. J. Mol. Biol. 2001, 305, 567-580
41. Lu, A.; Wiśniewski, J. R.; Mann, M. J. Proteome Res. 2009, 8, 2418-2425
42. Chen, E. I.; McClatchy, D.; Park, S. K.; Yates, J. R., 3rd. Anal. Chem. 2008, 80, 8694-8701
43. Tao, D. Y.; Qiao, X. Q.; Sun, L. L.; Hou, C. Y.; Gao, L.; Zhang, L. H.; Shan, Y. C.; Liang, Z.; Zhang, Y. K. J. Proteome Res. 2011, 10, 732-738