메뉴 건너뛰기




Volumn 23, Issue 17, 2013, Pages

Building synthetic memory

Author keywords

[No Author keywords available]

Indexed keywords

GENETIC RECOMBINATION; GENETIC TRANSCRIPTION; MEMORY; NUCLEIC ACID HYBRIDIZATION; PHOSPHORYLATION; REVIEW;

EID: 84883820704     PISSN: 09609822     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.cub.2013.06.047     Document Type: Review
Times cited : (59)

References (50)
  • 1
    • 0034688174 scopus 로고    scopus 로고
    • Construction of a genetic toggle switch in Escherichia coli
    • T.S. Gardner, C.R. Cantor, and J.J. Collins Construction of a genetic toggle switch in Escherichia coli Nature 403 2000 339 342
    • (2000) Nature , vol.403 , pp. 339-342
    • Gardner, T.S.1    Cantor, C.R.2    Collins, J.J.3
  • 3
  • 4
  • 5
    • 17844374314 scopus 로고    scopus 로고
    • A synthetic multicellular system for programmed pattern formation
    • S. Basu, Y. Gerchman, C.H. Collins, F.H. Arnold, and R. Weiss A synthetic multicellular system for programmed pattern formation Nature 434 2005 1130 1134
    • (2005) Nature , vol.434 , pp. 1130-1134
    • Basu, S.1    Gerchman, Y.2    Collins, C.H.3    Arnold, F.H.4    Weiss, R.5
  • 6
    • 80052456127 scopus 로고    scopus 로고
    • Multi-input RNAi-based logic circuit for identification of specific cancer cells
    • Z. Xie, L. Wroblewska, L. Prochazka, R. Weiss, and Y. Benenson Multi-input RNAi-based logic circuit for identification of specific cancer cells Science 333 2011 1307 1311
    • (2011) Science , vol.333 , pp. 1307-1311
    • Xie, Z.1    Wroblewska, L.2    Prochazka, L.3    Weiss, R.4    Benenson, Y.5
  • 8
    • 7444241154 scopus 로고    scopus 로고
    • Cold Spring Harbor Laboratory Press Cold Spring Harbor, NY
    • M. Ptashne A Genetic Switch 2004 Cold Spring Harbor Laboratory Press Cold Spring Harbor, NY
    • (2004) A Genetic Switch
    • Ptashne, M.1
  • 9
    • 73149084398 scopus 로고    scopus 로고
    • Making cellular memories
    • D.R. Burrill, and P.A. Silver Making cellular memories Cell 140 2010 13 18
    • (2010) Cell , vol.140 , pp. 13-18
    • Burrill, D.R.1    Silver, P.A.2
  • 10
    • 0036532226 scopus 로고    scopus 로고
    • Self-perpetuating states in signal transduction: Positive feedback, double-negative feedback and bistability
    • J.E. Ferrell Self-perpetuating states in signal transduction: positive feedback, double-negative feedback and bistability Curr. Opin. Cell Biol. 14 2002 140 148
    • (2002) Curr. Opin. Cell Biol. , vol.14 , pp. 140-148
    • Ferrell, J.E.1
  • 11
    • 79960650829 scopus 로고    scopus 로고
    • Neural network computation with DNA strand displacement cascades
    • L. Qian, E. Winfree, and J. Bruck Neural network computation with DNA strand displacement cascades Nature 475 2011 368 372
    • (2011) Nature , vol.475 , pp. 368-372
    • Qian, L.1    Winfree, E.2    Bruck, J.3
  • 12
    • 33846116559 scopus 로고    scopus 로고
    • Construction of an in vitro bistable circuit from synthetic transcriptional switches
    • J. Kim, K.S. White, and E. Winfree Construction of an in vitro bistable circuit from synthetic transcriptional switches Mol. Syst. Biol. 2 2006 68
    • (2006) Mol. Syst. Biol. , vol.2 , pp. 68
    • Kim, J.1    White, K.S.2    Winfree, E.3
  • 13
    • 84869812690 scopus 로고    scopus 로고
    • Bottom-up construction of in vitro switchable memories
    • E3212-E2320
    • A. Padirac, T. Fujii, and Y. Rondelez Bottom-up construction of in vitro switchable memories Proc. Natl. Acad. Sci. USA 109 2012 E3212-E2320
    • (2012) Proc. Natl. Acad. Sci. USA , vol.109
    • Padirac, A.1    Fujii, T.2    Rondelez, Y.3
  • 15
    • 0034842278 scopus 로고    scopus 로고
    • Tracing the lineage of tracing cell lineages
    • C.D. Stern, and S.E. Fraser Tracing the lineage of tracing cell lineages Nat. Cell Biol. 3 2001 E216 E218
    • (2001) Nat. Cell Biol. , vol.3
    • Stern, C.D.1    Fraser, S.E.2
  • 16
    • 0034059140 scopus 로고    scopus 로고
    • Cre recombinase: The universal reagent for genome tailoring
    • A. Nagy Cre recombinase: The universal reagent for genome tailoring Genesis 26 2000 99 109
    • (2000) Genesis , vol.26 , pp. 99-109
    • Nagy, A.1
  • 18
    • 50949122967 scopus 로고    scopus 로고
    • Design and construction of a double inversion recombination switch for heritable sequential genetic memory
    • T.S. Ham, S.K. Lee, J.D. Keasling, and A.P. Arkin Design and construction of a double inversion recombination switch for heritable sequential genetic memory PLoS ONE 3 2008 e2815
    • (2008) PLoS ONE , vol.3 , pp. 2815
    • Ham, T.S.1    Lee, S.K.2    Keasling, J.D.3    Arkin, A.P.4
  • 19
    • 84875230351 scopus 로고    scopus 로고
    • Synthetic circuits integrating logic and memory in living cells
    • P. Siuti, J. Yazbek, and T.K. Lu Synthetic circuits integrating logic and memory in living cells Nat. Biotechnol. 31 2013 448 452
    • (2013) Nat. Biotechnol. , vol.31 , pp. 448-452
    • Siuti, P.1    Yazbek, J.2    Lu, T.K.3
  • 20
    • 84861865655 scopus 로고    scopus 로고
    • Rewritable digital data storage in live cells via engineered control of recombination directionality
    • J. Bonnet, P. Subsoontorn, and D. Endy Rewritable digital data storage in live cells via engineered control of recombination directionality Proc. Natl. Acad. Sci. USA 109 2012 8884 8889
    • (2012) Proc. Natl. Acad. Sci. USA , vol.109 , pp. 8884-8889
    • Bonnet, J.1    Subsoontorn, P.2    Endy, D.3
  • 23
    • 84883805358 scopus 로고    scopus 로고
    • Design and analysis of genetically encoded counters
    • P. Subsoontorn, and D. Endy Design and analysis of genetically encoded counters Procedia Comp. Sci. 11 2012 43 54
    • (2012) Procedia Comp. Sci. , vol.11 , pp. 43-54
    • Subsoontorn, P.1    Endy, D.2
  • 26
    • 79952214973 scopus 로고    scopus 로고
    • Synthetic circuit identifies subpopulations with sustained memory of DNA damage
    • D.R. Burrill, and P.A. Silver Synthetic circuit identifies subpopulations with sustained memory of DNA damage Genes Dev. 25 2011 434 439
    • (2011) Genes Dev. , vol.25 , pp. 434-439
    • Burrill, D.R.1    Silver, P.A.2
  • 27
    • 84863644753 scopus 로고    scopus 로고
    • Synthetic memory circuits for tracking human cell fate
    • D.R. Burrill, M.C. Inniss, P.M. Boyle, and P.A. Silver Synthetic memory circuits for tracking human cell fate Genes Dev. 26 2012 1486 1497
    • (2012) Genes Dev. , vol.26 , pp. 1486-1497
    • Burrill, D.R.1    Inniss, M.C.2    Boyle, P.M.3    Silver, P.A.4
  • 28
    • 0022411890 scopus 로고
    • A system for detection of genetic and epigenetic alterations in Escherichia coli induced by DNA-damaging agents
    • Z. Toman, C. Dambly-Chaudière, L. Tenenbaum, and M. Radman A system for detection of genetic and epigenetic alterations in Escherichia coli induced by DNA-damaging agents J. Mol. Biol. 186 1985 97 105
    • (1985) J. Mol. Biol. , vol.186 , pp. 97-105
    • Toman, Z.1    Dambly-Chaudière, C.2    Tenenbaum, L.3    Radman, M.4
  • 29
    • 34447505900 scopus 로고    scopus 로고
    • A tunable genetic switch based on RNAi and repressor proteins for regulating gene expression in mammalian cells
    • T.L. Deans, C.R. Cantor, and J.J. Collins A tunable genetic switch based on RNAi and repressor proteins for regulating gene expression in mammalian cells Cell 130 2007 363 372
    • (2007) Cell , vol.130 , pp. 363-372
    • Deans, T.L.1    Cantor, C.R.2    Collins, J.J.3
  • 30
    • 17144456808 scopus 로고    scopus 로고
    • Positive feedback in eukaryotic gene networks: Cell differentiation by graded to binary response conversion
    • A. Becskei, B. Séraphin, and L. Serrano Positive feedback in eukaryotic gene networks: cell differentiation by graded to binary response conversion EMBO J. 20 2001 2528 2535
    • (2001) EMBO J. , vol.20 , pp. 2528-2535
    • Becskei, A.1    Séraphin, B.2    Serrano, L.3
  • 32
    • 22144452865 scopus 로고    scopus 로고
    • Hysteresis in a synthetic mammalian gene network
    • B.P. Kramer, and M. Fussenegger Hysteresis in a synthetic mammalian gene network Proc. Natl. Acad. Sci. USA 102 2005 9517 9522
    • (2005) Proc. Natl. Acad. Sci. USA , vol.102 , pp. 9517-9522
    • Kramer, B.P.1    Fussenegger, M.2
  • 33
    • 26844571282 scopus 로고    scopus 로고
    • Multisite protein phosphorylation makes a good threshold but can be a poor switch
    • J. Gunawardena Multisite protein phosphorylation makes a good threshold but can be a poor switch Proc. Natl. Acad. Sci. USA 102 2005 14617 14622
    • (2005) Proc. Natl. Acad. Sci. USA , vol.102 , pp. 14617-14622
    • Gunawardena, J.1
  • 34
    • 77952617125 scopus 로고    scopus 로고
    • Sex determination in Drosophila: The view from the top
    • H.K. Salz, and J.W. Erickson Sex determination in Drosophila: The view from the top Fly 4 2010 60 70
    • (2010) Fly , vol.4 , pp. 60-70
    • Salz, H.K.1    Erickson, J.W.2
  • 35
    • 84874252353 scopus 로고    scopus 로고
    • On the origin of bistability in the Stage 2 of the Huang-Ferrell model of the MAPK signaling
    • O. Hadač, I. Schreiber, and M. Přibyl On the origin of bistability in the Stage 2 of the Huang-Ferrell model of the MAPK signaling J. Chem. Phys. 138 2013 065102
    • (2013) J. Chem. Phys. , vol.138 , pp. 065102
    • Hadač, O.1    Schreiber, I.2    Přibyl, M.3
  • 36
    • 84864033851 scopus 로고    scopus 로고
    • Protein scaffolds can enhance the bistability of multisite phosphorylation systems
    • C. Chan, X. Liu, L. Wang, L. Bardwell, Q. Nie, and G. Enciso Protein scaffolds can enhance the bistability of multisite phosphorylation systems PLoS Comput. Biol. 8 2012 e1002551
    • (2012) PLoS Comput. Biol. , vol.8 , pp. 1002551
    • Chan, C.1    Liu, X.2    Wang, L.3    Bardwell, L.4    Nie, Q.5    Enciso, G.6
  • 37
    • 84856991216 scopus 로고    scopus 로고
    • Regulation of cytoplasmic polyadenylation can generate a bistable switch
    • N. Aslam, and H.Z. Shouval Regulation of cytoplasmic polyadenylation can generate a bistable switch BMC Syst. Biol. 6 2012 12
    • (2012) BMC Syst. Biol. , vol.6 , pp. 12
    • Aslam, N.1    Shouval, H.Z.2
  • 38
    • 0026038913 scopus 로고
    • The cap and poly(A) tail function synergistically to regulate mRNA translational efficiency
    • D.R. Gallie The cap and poly(A) tail function synergistically to regulate mRNA translational efficiency Genes Dev. 5 1991 2108 2116
    • (1991) Genes Dev. , vol.5 , pp. 2108-2116
    • Gallie, D.R.1
  • 40
    • 46249108209 scopus 로고    scopus 로고
    • Computational design of digital and memory biological devices
    • G. Rodrigo, and A. Jaramillo Computational design of digital and memory biological devices Syst. Synth. Biol. 1 2007 183 195
    • (2007) Syst. Synth. Biol. , vol.1 , pp. 183-195
    • Rodrigo, G.1    Jaramillo, A.2
  • 41
    • 65549121563 scopus 로고    scopus 로고
    • Monomeric bistability and the role of autoloops in gene regulation
    • S. Widder, J. Macía, and R. Solé Monomeric bistability and the role of autoloops in gene regulation PLoS ONE 4 2009 e5399
    • (2009) PLoS ONE , vol.4 , pp. 5399
    • Widder, S.1    Macía, J.2    Solé, R.3
  • 42
    • 68649088120 scopus 로고    scopus 로고
    • Two-component genetic switch as a synthetic module with tunable stability
    • C.-M. Ghim, and E. Almaas Two-component genetic switch as a synthetic module with tunable stability Phys. Rev. Lett. 103 2009 028101
    • (2009) Phys. Rev. Lett. , vol.103 , pp. 028101
    • Ghim, C.-M.1    Almaas, E.2
  • 43
    • 77951052379 scopus 로고    scopus 로고
    • Robust dynamical pattern formation from a multifunctional minimal genetic circuit
    • G. Rodrigo, J. Carrera, S.F. Elena, and A. Jaramillo Robust dynamical pattern formation from a multifunctional minimal genetic circuit BMC Syst. Biol. 4 2010 48
    • (2010) BMC Syst. Biol. , vol.4 , pp. 48
    • Rodrigo, G.1    Carrera, J.2    Elena, S.F.3    Jaramillo, A.4
  • 44
    • 84867420739 scopus 로고    scopus 로고
    • A new approach to an old problem: Synthetic biology tools for human disease and metabolism
    • D.R. Burrill, P.M. Boyle, and P.A. Silver A new approach to an old problem: synthetic biology tools for human disease and metabolism Cold Spring Harb. Symp. Quant. Biol. 76 2011 145 154
    • (2011) Cold Spring Harb. Symp. Quant. Biol. , vol.76 , pp. 145-154
    • Burrill, D.R.1    Boyle, P.M.2    Silver, P.A.3
  • 45
    • 83855163433 scopus 로고    scopus 로고
    • Emerging biomedical applications of synthetic biology
    • W. Weber, and M. Fussenegger Emerging biomedical applications of synthetic biology Nat. Rev. Genet. 13 2011 21 35
    • (2011) Nat. Rev. Genet. , vol.13 , pp. 21-35
    • Weber, W.1    Fussenegger, M.2
  • 47
    • 80052484996 scopus 로고    scopus 로고
    • Synthetic biology moving into the clinic
    • W.C. Ruder, T. Lu, and J.J. Collins Synthetic biology moving into the clinic Science 333 2011 1248 1252
    • (2011) Science , vol.333 , pp. 1248-1252
    • Ruder, W.C.1    Lu, T.2    Collins, J.J.3
  • 48
    • 84862666539 scopus 로고    scopus 로고
    • Engineering molecular circuits using synthetic biology in mammalian cells
    • M. Wieland, and M. Fussenegger Engineering molecular circuits using synthetic biology in mammalian cells Annu. Rev. Chem. Biomol. Eng. 3 2012 209 234
    • (2012) Annu. Rev. Chem. Biomol. Eng. , vol.3 , pp. 209-234
    • Wieland, M.1    Fussenegger, M.2
  • 49
    • 84865296367 scopus 로고    scopus 로고
    • Synthetic biology advancing clinical applications
    • M. Folcher, and M. Fussenegger Synthetic biology advancing clinical applications Curr. Opin. Chem. Biol. 16 2012 345 354
    • (2012) Curr. Opin. Chem. Biol. , vol.16 , pp. 345-354
    • Folcher, M.1    Fussenegger, M.2
  • 50
    • 84875268975 scopus 로고    scopus 로고
    • From gene switches to mammalian designer cells: Present and future prospects
    • S. Ausländer, and M. Fussenegger From gene switches to mammalian designer cells: present and future prospects Trends Biotechnol. 31 2012 155 168
    • (2012) Trends Biotechnol. , vol.31 , pp. 155-168
    • Ausländer, S.1    Fussenegger, M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.