-
1
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S. F., W. Gish, W. Miller, E. W. Myers, and D. J. Lipman, 1990 Basic local alignment search tool. J. Mol. Biol. 215: 403-410.
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
2
-
-
23144441141
-
E-RNAi: A web application to design optimized RNAi constructs
-
Arziman, Z., T. Horn, and M. Boutros, 2005 E-RNAi: a web application to design optimized RNAi constructs. Nucleic Acids Res. 33: W582-W588.
-
(2005)
Nucleic Acids Res.
, vol.33
-
-
Arziman, Z.1
Horn, T.2
Boutros, M.3
-
3
-
-
45549089565
-
The art and design of genetic screens: RNA interference
-
Boutros, M., and J. Ahringer, 2008 The art and design of genetic screens: RNA interference. Nat. Rev. Genet. 9: 554-566.
-
(2008)
Nat. Rev. Genet.
, vol.9
, pp. 554-566
-
-
Boutros, M.1
Ahringer, J.2
-
4
-
-
0012340085
-
Finishing a whole-genome shotgun: Release 3 of the Drosophila melanogaster euchromatic genome sequence
-
Celniker, S. E., D. A. Wheeler, B. Kronmiller, J. W. Carlson, A. Halpern et al., 2002 Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence. Genome Biol. 3: RESEARCH0079.
-
(2002)
Genome Biol.
, vol.3
-
-
Celniker, S.E.1
Wheeler, D.A.2
Kronmiller, B.3
Carlson, J.W.4
Halpern, A.5
-
5
-
-
58149189867
-
FLYSNPdb: A high-density SNP database of Drosophila melanogaster
-
Chen, D., J. Berger, M. Fellner, and T. Suzuki, 2009 FLYSNPdb: a high-density SNP database of Drosophila melanogaster. Nucleic Acids Res. 37: D567-570.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Chen, D.1
Berger, J.2
Fellner, M.3
Suzuki, T.4
-
6
-
-
78951479577
-
Targeting DNA double-strand breaks with TAL effector nucleases
-
Christian, M., T. Cermak, E. L. Doyle, C. Schmidt, F. Zhang et al., 2010 Targeting DNA double-strand breaks with TAL effector nucleases. Genetics 186: 757-761.
-
(2010)
Genetics
, vol.186
, pp. 757-761
-
-
Christian, M.1
Cermak, T.2
Doyle, E.L.3
Schmidt, C.4
Zhang, F.5
-
7
-
-
0034612276
-
Use of double-stranded RNA interference in Drosophila cell lines to dissect signal transduction pathways
-
Clemens, J. C., C. A. Worby, N. Simonson-Leff, M. Muda, T. Maehama et al., 2000 Use of double-stranded RNA interference in Drosophila cell lines to dissect signal transduction pathways. Proc. Natl. Acad. Sci. U S A 97: 6499-6503.
-
(2000)
Proc. Natl. Acad. Sci. U S A
, vol.97
, pp. 6499-6503
-
-
Clemens, J.C.1
Worby, C.A.2
Simonson-Leff, N.3
Muda, M.4
Maehama, T.5
-
8
-
-
84873729095
-
Multiplex genome engineering using CRISPR/Cas systems
-
Cong, L., F. A. Ran, D. Cox, S. Lin, R. Barretto et al., 2013 Multiplex genome engineering using CRISPR/Cas systems. Science 339: 819-823.
-
(2013)
Science
, vol.339
, pp. 819-823
-
-
Cong, L.1
Ran, F.A.2
Cox, D.3
Lin, S.4
Barretto, R.5
-
9
-
-
34447530305
-
A genome-wide transgenic RNAi library for conditional gene inactivation in Drosophila
-
Dietzl, G., D. Chen, F. Schnorrer, K. C. Su, Y. Barinova et al., 2007 A genome-wide transgenic RNAi library for conditional gene inactivation in Drosophila. Nature 448: 151-156.
-
(2007)
Nature
, vol.448
, pp. 151-156
-
-
Dietzl, G.1
Chen, D.2
Schnorrer, F.3
Su, K.C.4
Barinova, Y.5
-
10
-
-
84868108251
-
DSIR: Assessing the design of highly potent siRNA by testing a set of cancer-relevant target genes
-
Filhol, O., D. Ciais, C. Lajaunie, P. Charbonnier, N. Foveau et al., 2012 DSIR: assessing the design of highly potent siRNA by testing a set of cancer-relevant target genes. PLoS One 7: e48057.
-
(2012)
PLoS One
, vol.7
-
-
Filhol, O.1
Ciais, D.2
Lajaunie, C.3
Charbonnier, P.4
Foveau, N.5
-
11
-
-
33644873679
-
FlyRNAi: The Drosophila RNAi screening center database
-
Flockhart, I., M. Booker, A. Kiger, M. Boutros, S. Armknecht et al., 2006 FlyRNAi: the Drosophila RNAi screening center database. Nucleic Acids Res. 34: D489-D494.
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Flockhart, I.1
Booker, M.2
Kiger, A.3
Boutros, M.4
Armknecht, S.5
-
12
-
-
84862199922
-
FlyRNAi. org-the database of the Drosophila RNAi screening center: 2012 update
-
Flockhart, I. T., M. Booker, Y. Hu, B. McElvany, Q. Gilly et al., 2012 FlyRNAi. org-the database of the Drosophila RNAi screening center: 2012 update. Nucleic Acids Res. 40: D715-719.
-
(2012)
Nucleic Acids Res.
, vol.40
-
-
Flockhart, I.T.1
Booker, M.2
Hu, Y.3
McElvany, B.4
Gilly, Q.5
-
13
-
-
0037249406
-
The FlyBase database of the Drosophila genome projects and community literature
-
FlyBase Consortium
-
FlyBase Consortium, 2003 The FlyBase database of the Drosophila genome projects and community literature. Nucleic Acids Res. 31: 172-175.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 172-175
-
-
-
14
-
-
0034676457
-
Functional genomic analysis of C. elegans chromosome I by systematic RNA interference
-
Fraser, A. G., R. S. Kamath, P. Zipperlen, M. Martinez-Campos, M. Sohrmann et al., 2000 Functional genomic analysis of C. elegans chromosome I by systematic RNA interference. Nature 408: 325-330.
-
(2000)
Nature
, vol.408
, pp. 325-330
-
-
Fraser, A.G.1
Kamath, R.S.2
Zipperlen, P.3
Martinez-Campos, M.4
Sohrmann, M.5
-
15
-
-
84876559730
-
ChiTaRS: A database of human, mouse and fruit fly chimeric transcripts and RNA-sequencing data
-
Frenkel-Morgenstern, M., A. Gorohovski, V. Lacroix, M. Rogers, K. Ibanez et al., 2013 ChiTaRS: a database of human, mouse and fruit fly chimeric transcripts and RNA-sequencing data. Nucleic Acids Res. 41: D142-151.
-
(2013)
Nucleic Acids Res.
, vol.41
-
-
Frenkel-Morgenstern, M.1
Gorohovski, A.2
Lacroix, V.3
Rogers, M.4
Ibanez, K.5
-
16
-
-
0034673638
-
An RNA-directed nuclease mediates post-transcriptional gene silencing in Drosophila cells
-
Hammond, S. M., E. Bernstein, D. Beach, and G. J. Hannon, 2000 An RNA-directed nuclease mediates post-transcriptional gene silencing in Drosophila cells. Nature 404: 293-296.
-
(2000)
Nature
, vol.404
, pp. 293-296
-
-
Hammond, S.M.1
Bernstein, E.2
Beach, D.3
Hannon, G.J.4
-
17
-
-
77954304698
-
E-RNAi: A web application for the multi-species design of RNAi reagents-2010 update
-
Horn, T., and M. Boutros, 2010 E-RNAi: a web application for the multi-species design of RNAi reagents-2010 update. Nucleic Acids Res. 38: W332-W339.
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Horn, T.1
Boutros, M.2
-
18
-
-
78049437928
-
Design and evaluation of genome-wide libraries for RNA interference screens
-
Horn, T., T. Sandmann, and M. Boutros, 2010 Design and evaluation of genome-wide libraries for RNA interference screens. Genome Biol. 11: R61.
-
(2010)
Genome Biol.
, vol.11
-
-
Horn, T.1
Sandmann, T.2
Boutros, M.3
-
19
-
-
34250873404
-
Sequence finishing and mapping of Drosophila melanogaster heterochromatin
-
Hoskins, R. A., J. W. Carlson, C. Kennedy, D. Acevedo, M. Evans-Holm et al., 2007 Sequence finishing and mapping of Drosophila melanogaster heterochromatin. Science 316: 1625-1628.
-
(2007)
Science
, vol.316
, pp. 1625-1628
-
-
Hoskins, R.A.1
Carlson, J.W.2
Kennedy, C.3
Acevedo, D.4
Evans-Holm, M.5
-
20
-
-
80052142945
-
An integrative approach to ortholog prediction for diseasefocused and other functional studies
-
Hu, Y., I. Flockhart, A. Vinayagam, C. Bergwitz, B. Berger et al., 2011 An integrative approach to ortholog prediction for diseasefocused and other functional studies. BMC Bioinformatics 12: 357.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 357
-
-
Hu, Y.1
Flockhart, I.2
Vinayagam, A.3
Bergwitz, C.4
Berger, B.5
-
21
-
-
0037448540
-
Systematic functional analysis of the Caenorhabditis elegans genome using RNAi
-
Kamath, R. S., A. G. Fraser, Y. Dong, G. Poulin, R. Durbin et al., 2003 Systematic functional analysis of the Caenorhabditis elegans genome using RNAi. Nature 421: 231-237.
-
(2003)
Nature
, vol.421
, pp. 231-237
-
-
Kamath, R.S.1
Fraser, A.G.2
Dong, Y.3
Poulin, G.4
Durbin, R.5
-
22
-
-
34247873185
-
Genome-wide resources of endoribonucleaseprepared short interfering RNAs for specific loss-of-function studies
-
Kittler, R., V. Surendranath, A. K. Heninger, M. Slabicki, M. Theis et al., 2007 Genome-wide resources of endoribonucleaseprepared short interfering RNAs for specific loss-of-function studies. Nat. Methods 4: 337-344.
-
(2007)
Nat. Methods
, vol.4
, pp. 337-344
-
-
Kittler, R.1
Surendranath, V.2
Heninger, A.K.3
Slabicki, M.4
Theis, M.5
-
23
-
-
33748994797
-
Evidence of off-target effects associated with long dsRNAs in Drosophila melanogaster cell-based assays
-
Kulkarni, M. M., M. Booker, S. J. Silver, A. Friedman, P. Hong et al., 2006 Evidence of off-target effects associated with long dsRNAs in Drosophila melanogaster cell-based assays. Nat. Methods 3: 833-838.
-
(2006)
Nat. Methods
, vol.3
, pp. 833-838
-
-
Kulkarni, M.M.1
Booker, M.2
Silver, S.J.3
Friedman, A.4
Hong, P.5
-
24
-
-
37249011314
-
RNAi screening for therapeutic targets in human malignancies
-
Micklem, D. R., and J. B. Lorens, 2007 RNAi screening for therapeutic targets in human malignancies. Curr. Pharm. Biotechnol. 8: 337-343.
-
(2007)
Curr. Pharm. Biotechnol.
, vol.8
, pp. 337-343
-
-
Micklem, D.R.1
Lorens, J.B.2
-
25
-
-
33947592830
-
Off-target effects associated with long dsRNAs in Drosophila RNAi screens
-
Moffat, J., J. H. Reiling, and D. M. Sabatini, 2007 Off-target effects associated with long dsRNAs in Drosophila RNAi screens. Trends Pharmacol. Sci. 28: 149-151.
-
(2007)
Trends Pharmacol. Sci.
, vol.28
, pp. 149-151
-
-
Moffat, J.1
Reiling, J.H.2
Sabatini, D.M.3
-
26
-
-
77953626646
-
Genomic screening with RNAi: Results and challenges
-
Mohr, S., C. Bakal, and N. Perrimon, 2010 Genomic screening with RNAi: results and challenges. Annu. Rev. Biochem. 79: 37-64.
-
(2010)
Annu. Rev. Biochem.
, vol.79
, pp. 37-64
-
-
Mohr, S.1
Bakal, C.2
Perrimon, N.3
-
27
-
-
84867594876
-
RNAi screening: New approaches, understandings, and organisms
-
Mohr, S. E., and N. Perrimon, 2012 RNAi screening: new approaches, understandings, and organisms. Wiley Interdiscip. Rev. RNA 3: 145-158.
-
(2012)
Wiley Interdiscip. Rev. RNA
, vol.3
, pp. 145-158
-
-
Mohr, S.E.1
Perrimon, N.2
-
28
-
-
52949087943
-
Identification of JAK/STAT pathway regulators-insights from RNAi screens
-
Muller, P., M. Boutros, and M. P. Zeidler, 2008 Identification of JAK/STAT pathway regulators-insights from RNAi screens. Semin. Cell Dev. Biol. 19: 360-369.
-
(2008)
Semin. Cell Dev. Biol.
, vol.19
, pp. 360-369
-
-
Muller, P.1
Boutros, M.2
Zeidler, M.P.3
-
29
-
-
0034708758
-
A whole-genome assembly of Drosophila
-
Myers, E. W., G. G. Sutton, A. L. Delcher, I. M. Dew, D. P. Fasulo et al., 2000 A whole-genome assembly of Drosophila. Science 287: 2196-2204.
-
(2000)
Science
, vol.287
, pp. 2196-2204
-
-
Myers, E.W.1
Sutton, G.G.2
Delcher, A.L.3
Dew, I.M.4
Fasulo, D.P.5
-
30
-
-
37749006118
-
Vector and parameters for targeted transgenic RNA interference in Drosophila melanogaster
-
Ni, J. Q., M. Markstein, R. Binari, B. Pfeiffer, L. P. Liu et al., 2008 Vector and parameters for targeted transgenic RNA interference in Drosophila melanogaster. Nat. Methods 5: 49-51.
-
(2008)
Nat. Methods
, vol.5
, pp. 49-51
-
-
Ni, J.Q.1
Markstein, M.2
Binari, R.3
Pfeiffer, B.4
Liu, L.P.5
-
31
-
-
70350139873
-
A Drosophila resource of transgenic RNAi lines for neurogenetics
-
Ni, J. Q., L. P. Liu, R. Binari, R. Hardy, H. S. Shim et al., 2009 A Drosophila resource of transgenic RNAi lines for neurogenetics. Genetics 182: 1089-1100.
-
(2009)
Genetics
, vol.182
, pp. 1089-1100
-
-
Ni, J.Q.1
Liu, L.P.2
Binari, R.3
Hardy, R.4
Shim, H.S.5
-
32
-
-
79955594279
-
A genome-scale shRNA resource for transgenic RNAi in Drosophila
-
Ni, J. Q., R. Zhou, B. Czech, L. P. Liu, L. Holderbaum et al., 2011 A genome-scale shRNA resource for transgenic RNAi in Drosophila. Nat. Methods 8: 405-407.
-
(2011)
Nat. Methods
, vol.8
, pp. 405-407
-
-
Ni, J.Q.1
Zhou, R.2
Czech, B.3
Liu, L.P.4
Holderbaum, L.5
-
34
-
-
79953228554
-
Reliability analysis of the Ahringer Caenorhabditis elegans RNAi feeding library: A guide for genome-wide screens
-
Qu, W., C. Ren, Y. Li, J. Shi, J. Zhang et al., 2011 Reliability analysis of the Ahringer Caenorhabditis elegans RNAi feeding library: a guide for genome-wide screens. BMC Genomics 12: 170.
-
(2011)
BMC Genomics
, vol.12
, pp. 170
-
-
Qu, W.1
Ren, C.2
Li, Y.3
Shi, J.4
Zhang, J.5
-
35
-
-
84863814454
-
Nascent-seq indicates widespread cotranscriptional RNA editing in Drosophila
-
Rodriguez, J., J. S. Menet, and M. Rosbash, 2012 Nascent-seq indicates widespread cotranscriptional RNA editing in Drosophila. Mol. Cell 47: 27-37.
-
(2012)
Mol. Cell
, vol.47
, pp. 27-37
-
-
Rodriguez, J.1
Menet, J.S.2
Rosbash, M.3
-
36
-
-
33747794587
-
Genome-scale loss-of-function screening with a lentiviral RNAi library
-
Root, D. E., N. Hacohen, W. C. Hahn, E. S. Lander, and D. M. Sabatini, 2006 Genome-scale loss-of-function screening with a lentiviral RNAi library. Nat. Methods 3: 715-719.
-
(2006)
Nat. Methods
, vol.3
, pp. 715-719
-
-
Root, D.E.1
Hacohen, N.2
Hahn, W.C.3
Lander, E.S.4
Sabatini, D.M.5
-
37
-
-
69749083447
-
JBrowse: A next-generation genome browser
-
Skinner, M. E., A. V. Uzilov, L. D. Stein, C. J. Mungall, and I. H. Holmes, 2009 JBrowse: a next-generation genome browser. Genome Res. 19: 1630-1638.
-
(2009)
Genome Res.
, vol.19
, pp. 1630-1638
-
-
Skinner, M.E.1
Uzilov, A.V.2
Stein, L.D.3
Mungall, C.J.4
Holmes, I.H.5
-
38
-
-
33845663097
-
An accurate and interpretable model for siRNA efficacy prediction
-
Vert, J. P., N. Foveau, C. Lajaunie, and Y. Vandenbrouck, 2006 An accurate and interpretable model for siRNA efficacy prediction. BMC Bioinformatics 7: 520.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 520
-
-
Vert, J.P.1
Foveau, N.2
Lajaunie, C.3
Vandenbrouck, Y.4
-
39
-
-
77954631584
-
Drosophila Genetic Resource and Stock Center; The National BioResource Project
-
Yamamoto, M. T., 2010 Drosophila Genetic Resource and Stock Center; The National BioResource Project. Exp. Anim. 59: 125-138.
-
(2010)
Exp. Anim.
, vol.59
, pp. 125-138
-
-
Yamamoto, M.T.1
|