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Volumn 7, Issue , 2013, Pages

Global insights into energetic and metabolic networks in Rhodobacter sphaeroides

Author keywords

Constraint based analysis; Metabolic modeling; Phenotype microarray; Photosynthesis; Rhodobacter sphaeroides; Transhydrogenase

Indexed keywords

PHOTOBACTERIA; RHODOBACTER SPHAEROIDES;

EID: 84883727891     PISSN: None     EISSN: 17520509     Source Type: Journal    
DOI: 10.1186/1752-0509-7-89     Document Type: Article
Times cited : (46)

References (59)
  • 1
    • 79953663708 scopus 로고    scopus 로고
    • Consensus-phenotype integration of transcriptomic and metabolomic data implies a role for metabolism in the chemosensitivity of tumour cells
    • 10.1371/journal.pcbi.1001113, 3068923, 21483477
    • Cavill R, Kamburov A, Ellis JK, Athersuch TJ, Blagrove MS, Herwig R, Ebbels TM, Keun HC. Consensus-phenotype integration of transcriptomic and metabolomic data implies a role for metabolism in the chemosensitivity of tumour cells. PLoS Comput Biol 2011, 7(3):e1001113. 10.1371/journal.pcbi.1001113, 3068923, 21483477.
    • (2011) PLoS Comput Biol , vol.7 , Issue.3
    • Cavill, R.1    Kamburov, A.2    Ellis, J.K.3    Athersuch, T.J.4    Blagrove, M.S.5    Herwig, R.6    Ebbels, T.M.7    Keun, H.C.8
  • 2
    • 3042750616 scopus 로고    scopus 로고
    • Integration of transcriptomics and metabolomics for understanding of global responses to nutritional stresses in Arabidopsis thaliana
    • 10.1073/pnas.0403218101, 454188, 15199185
    • Hirai MY, Yano M, Goodenowe DB, Kanaya S, Kimura T, Awazuhara M, Arita M, Fujiwara T, Saito K. Integration of transcriptomics and metabolomics for understanding of global responses to nutritional stresses in Arabidopsis thaliana. Proc Natl Acad Sci USA 2004, 101(27):10205-10210. 10.1073/pnas.0403218101, 454188, 15199185.
    • (2004) Proc Natl Acad Sci USA , vol.101 , Issue.27 , pp. 10205-10210
    • Hirai, M.Y.1    Yano, M.2    Goodenowe, D.B.3    Kanaya, S.4    Kimura, T.5    Awazuhara, M.6    Arita, M.7    Fujiwara, T.8    Saito, K.9
  • 4
    • 33644527950 scopus 로고    scopus 로고
    • The model organism as a system: integrating 'omics' data sets
    • 10.1038/nrm1857, 16496022
    • Joyce AR, Palsson BO. The model organism as a system: integrating 'omics' data sets. Nat Rev Mol Cell Biol 2006, 7(3):198-210. 10.1038/nrm1857, 16496022.
    • (2006) Nat Rev Mol Cell Biol , vol.7 , Issue.3 , pp. 198-210
    • Joyce, A.R.1    Palsson, B.O.2
  • 5
    • 78650088693 scopus 로고    scopus 로고
    • Phenomic and transcriptomic analyses reveal that autophagy plays a major role in desiccation tolerance in Saccharomyces cerevisiae
    • 10.1039/c0mb00114g, 20963216
    • Ratnakumar S, Hesketh A, Gkargkas K, Wilson M, Rash BM, Hayes A, Tunnacliffe A, Oliver SG. Phenomic and transcriptomic analyses reveal that autophagy plays a major role in desiccation tolerance in Saccharomyces cerevisiae. Mol Biosyst 2011, 7(1):139-149. 10.1039/c0mb00114g, 20963216.
    • (2011) Mol Biosyst , vol.7 , Issue.1 , pp. 139-149
    • Ratnakumar, S.1    Hesketh, A.2    Gkargkas, K.3    Wilson, M.4    Rash, B.M.5    Hayes, A.6    Tunnacliffe, A.7    Oliver, S.G.8
  • 6
    • 73149122136 scopus 로고    scopus 로고
    • Applications of genome-scale metabolic reconstructions
    • 2795471, 19888215
    • Oberhardt MA, Palsson BO, Papin JA. Applications of genome-scale metabolic reconstructions. Mol Syst Biol 2009, 5:320. 2795471, 19888215.
    • (2009) Mol Syst Biol , vol.5 , pp. 320
    • Oberhardt, M.A.1    Palsson, B.O.2    Papin, J.A.3
  • 7
    • 71849086611 scopus 로고    scopus 로고
    • Direct photosynthetic recycling of carbon dioxide to isobutyraldehyde
    • 10.1038/nbt.1586, 19915552
    • Atsumi S, Higashide W, Liao JC. Direct photosynthetic recycling of carbon dioxide to isobutyraldehyde. Nat Biotechnol 2009, 27(12):1177-1180. 10.1038/nbt.1586, 19915552.
    • (2009) Nat Biotechnol , vol.27 , Issue.12 , pp. 1177-1180
    • Atsumi, S.1    Higashide, W.2    Liao, J.C.3
  • 8
    • 84878854426 scopus 로고    scopus 로고
    • Next generation biofuel engineering in prokaryotes
    • 10.1016/j.cbpa.2013.03.037, 23623045
    • Gronenberg LS, Marcheschi RJ, Liao JC. Next generation biofuel engineering in prokaryotes. Curr Opin Chem Biol 2013, 17(3):462-471. 10.1016/j.cbpa.2013.03.037, 23623045.
    • (2013) Curr Opin Chem Biol , vol.17 , Issue.3 , pp. 462-471
    • Gronenberg, L.S.1    Marcheschi, R.J.2    Liao, J.C.3
  • 9
    • 79957440851 scopus 로고    scopus 로고
    • Modification of the genome of Rhodobacter sphaeroides and construction of synthetic operons
    • Jaschke PR, Saer RG, Noll S, Beatty JT. Modification of the genome of Rhodobacter sphaeroides and construction of synthetic operons. Methods Enzymol 2011, 497:519-538.
    • (2011) Methods Enzymol , vol.497 , pp. 519-538
    • Jaschke, P.R.1    Saer, R.G.2    Noll, S.3    Beatty, J.T.4
  • 10
    • 0000947778 scopus 로고
    • The biochemistry and metabolic regulation of carbon metabolism and CO2-fixation in purple bacteria
    • The Netherlands: Kluwer Academic Publishers, Blankenship RE, Madigan MT, Bauer CE, Blankenship RE, Madigan MT, Bauer CE
    • Tabita FR. The biochemistry and metabolic regulation of carbon metabolism and CO2-fixation in purple bacteria. Anoxygenic Photosynthetic Bacteria 1995, 885-914. The Netherlands: Kluwer Academic Publishers, Blankenship RE, Madigan MT, Bauer CE, Blankenship RE, Madigan MT, Bauer CE.
    • (1995) Anoxygenic Photosynthetic Bacteria , pp. 885-914
    • Tabita, F.R.1
  • 11
    • 79960558167 scopus 로고    scopus 로고
    • IRsp1095: a genome-scale reconstruction of the Rhodobacter sphaeroides metabolic network
    • 10.1186/1752-0509-5-116, 3152904, 21777427
    • Imam S, Yilmaz S, Sohmen U, Gorzalski AS, Reed JL, Noguera DR, Donohue TJ. iRsp1095: a genome-scale reconstruction of the Rhodobacter sphaeroides metabolic network. BMC Syst Biol 2011, 5:116. 10.1186/1752-0509-5-116, 3152904, 21777427.
    • (2011) BMC Syst Biol , vol.5 , pp. 116
    • Imam, S.1    Yilmaz, S.2    Sohmen, U.3    Gorzalski, A.S.4    Reed, J.L.5    Noguera, D.R.6    Donohue, T.J.7
  • 13
    • 76649103695 scopus 로고    scopus 로고
    • Electron partitioning during light- and nutrient-powered hydrogen production by Rhodobacter sphaeroides
    • Yilmaz LS, Kontur WS, Sanders AP, Sohmen U, Donohue TJ, Noguera DR. Electron partitioning during light- and nutrient-powered hydrogen production by Rhodobacter sphaeroides. Bioenerg Res 2010, 1:55-66.
    • (2010) Bioenerg Res , vol.1 , pp. 55-66
    • Yilmaz, L.S.1    Kontur, W.S.2    Sanders, A.P.3    Sohmen, U.4    Donohue, T.J.5    Noguera, D.R.6
  • 14
    • 40849083830 scopus 로고    scopus 로고
    • Molecular hydrogen production by nitrogenase of Rhodobacter sphaeroides and by Fe-only hydrogenase of Rhodospirillum rubrum
    • Kim E, Lee M, Kim M, Lee JK. Molecular hydrogen production by nitrogenase of Rhodobacter sphaeroides and by Fe-only hydrogenase of Rhodospirillum rubrum. Int J Hydrogen Energy 2008, 33(5):1516-1521.
    • (2008) Int J Hydrogen Energy , vol.33 , Issue.5 , pp. 1516-1521
    • Kim, E.1    Lee, M.2    Kim, M.3    Lee, J.K.4
  • 15
    • 82955205919 scopus 로고    scopus 로고
    • Pathways involved in reductant distribution during photobiological H(2) production by Rhodobacter sphaeroides
    • 10.1128/AEM.05273-11, 3194864, 21856820
    • Kontur WS, Ziegelhoffer EC, Spero MA, Imam S, Noguera DR, Donohue TJ. Pathways involved in reductant distribution during photobiological H(2) production by Rhodobacter sphaeroides. Appl Environ Microbiol 2011, 77(20):7425-7429. 10.1128/AEM.05273-11, 3194864, 21856820.
    • (2011) Appl Environ Microbiol , vol.77 , Issue.20 , pp. 7425-7429
    • Kontur, W.S.1    Ziegelhoffer, E.C.2    Spero, M.A.3    Imam, S.4    Noguera, D.R.5    Donohue, T.J.6
  • 16
    • 77952242863 scopus 로고    scopus 로고
    • Coenzyme Q10 production in a 150-l reactor by a mutant strain of Rhodobacter sphaeroides
    • 10.1007/s10295-010-0699-4, 20195885
    • Kien NB, Kong IS, Lee MG, Kim JK. Coenzyme Q10 production in a 150-l reactor by a mutant strain of Rhodobacter sphaeroides. J Ind Microbiol Biotechnol 2010, 37(5):521-529. 10.1007/s10295-010-0699-4, 20195885.
    • (2010) J Ind Microbiol Biotechnol , vol.37 , Issue.5 , pp. 521-529
    • Kien, N.B.1    Kong, I.S.2    Lee, M.G.3    Kim, J.K.4
  • 17
    • 0002061480 scopus 로고    scopus 로고
    • Polyhydroxybutyrate accumulation and hydrogen evolution by Rhodobacter sphaeroides as a function of nitrogen availability
    • Khatipov E, Miyake M, Miyake J, Asada Y. Polyhydroxybutyrate accumulation and hydrogen evolution by Rhodobacter sphaeroides as a function of nitrogen availability. Biohydrogen 1999, III:157-161.
    • (1999) Biohydrogen , vol.3 , pp. 157-161
    • Khatipov, E.1    Miyake, M.2    Miyake, J.3    Asada, Y.4
  • 18
    • 84860210506 scopus 로고    scopus 로고
    • Practical removal of radioactivity from sediment mud in a swimming pool in Fukushima, Japan by immobilized photosynthetic bacteria
    • 10.1271/bbb.110853, 22484938
    • Sasaki K, Morikawa H, Kishibe T, Mikami A, Harada T, Ohta M. Practical removal of radioactivity from sediment mud in a swimming pool in Fukushima, Japan by immobilized photosynthetic bacteria. Biosci Biotechnol Biochem 2012, 76(4):859-862. 10.1271/bbb.110853, 22484938.
    • (2012) Biosci Biotechnol Biochem , vol.76 , Issue.4 , pp. 859-862
    • Sasaki, K.1    Morikawa, H.2    Kishibe, T.3    Mikami, A.4    Harada, T.5    Ohta, M.6
  • 19
    • 77956789483 scopus 로고    scopus 로고
    • Synthetic biology guides biofuel production
    • doi:10.1155/2010/541698.
    • Connor MR, Atsumi S. Synthetic biology guides biofuel production. J Biomed Biotechnol 2010, doi:10.1155/2010/541698.
    • (2010) J Biomed Biotechnol
    • Connor, M.R.1    Atsumi, S.2
  • 21
    • 0037379691 scopus 로고    scopus 로고
    • New technologies to assess genotype-phenotype relationships
    • Bochner BR. New technologies to assess genotype-phenotype relationships. Nat Rev Genet 2003, 4(4):309-314.
    • (2003) Nat Rev Genet , vol.4 , Issue.4 , pp. 309-314
    • Bochner, B.R.1
  • 22
    • 0034911878 scopus 로고    scopus 로고
    • Phenotype microarrays for high-throughput phenotypic testing and assay of gene function
    • 10.1101/gr.186501, 311101, 11435407
    • Bochner BR, Gadzinski P, Panomitros E. Phenotype microarrays for high-throughput phenotypic testing and assay of gene function. Genome Res 2001, 11(7):1246-1255. 10.1101/gr.186501, 311101, 11435407.
    • (2001) Genome Res , vol.11 , Issue.7 , pp. 1246-1255
    • Bochner, B.R.1    Gadzinski, P.2    Panomitros, E.3
  • 25
    • 35348934254 scopus 로고    scopus 로고
    • Genome-scale reconstruction of metabolic network in Bacillus subtilis based on high-throughput phenotyping and gene essentiality data
    • 10.1074/jbc.M703759200, 17573341
    • Oh YK, Palsson BO, Park SM, Schilling CH, Mahadevan R. Genome-scale reconstruction of metabolic network in Bacillus subtilis based on high-throughput phenotyping and gene essentiality data. J Biol Chem 2007, 282(39):28791-28799. 10.1074/jbc.M703759200, 17573341.
    • (2007) J Biol Chem , vol.282 , Issue.39 , pp. 28791-28799
    • Oh, Y.K.1    Palsson, B.O.2    Park, S.M.3    Schilling, C.H.4    Mahadevan, R.5
  • 26
    • 0032317176 scopus 로고    scopus 로고
    • Site-directed mutagenesis of the proton-pumping pyridine nucleotide transhydrogenase of Escherichia coli
    • Bragg PD. Site-directed mutagenesis of the proton-pumping pyridine nucleotide transhydrogenase of Escherichia coli. Biochim Biophys Acta 1998, 1365(1-2):98-104.
    • (1998) Biochim Biophys Acta , vol.1365 , Issue.1-2 , pp. 98-104
    • Bragg, P.D.1
  • 27
    • 0015499043 scopus 로고
    • Function of energy-dependent transhydrogenase in Escherichia coli
    • 10.1016/0006-291X(72)90969-2, 4337747
    • Bragg PD, Davies PL, Hou C. Function of energy-dependent transhydrogenase in Escherichia coli. Biochem Biophys Res Commun 1972, 47(5):1248-1255. 10.1016/0006-291X(72)90969-2, 4337747.
    • (1972) Biochem Biophys Res Commun , vol.47 , Issue.5 , pp. 1248-1255
    • Bragg, P.D.1    Davies, P.L.2    Hou, C.3
  • 29
    • 1342325419 scopus 로고    scopus 로고
    • The soluble and membrane-bound transhydrogenases UdhA and PntAB have divergent functions in NADPH metabolism of Escherichia coli
    • Sauer U, Canonaco F, Heri S, Perrenoud A, Fischer E. The soluble and membrane-bound transhydrogenases UdhA and PntAB have divergent functions in NADPH metabolism of Escherichia coli. J Biol Chem 2004, 279(8):6613-6619.
    • (2004) J Biol Chem , vol.279 , Issue.8 , pp. 6613-6619
    • Sauer, U.1    Canonaco, F.2    Heri, S.3    Perrenoud, A.4    Fischer, E.5
  • 30
    • 77955429093 scopus 로고    scopus 로고
    • High NADPH/NADP+ ratio improves thymidine production by a metabolically engineered Escherichia coli strain
    • Lee HC, Kim JS, Jang W, Kim SY. High NADPH/NADP+ ratio improves thymidine production by a metabolically engineered Escherichia coli strain. J Biotechnol 2010, 149(1-2):24-32.
    • (2010) J Biotechnol , vol.149 , Issue.1-2 , pp. 24-32
    • Lee, H.C.1    Kim, J.S.2    Jang, W.3    Kim, S.Y.4
  • 31
    • 0036135679 scopus 로고    scopus 로고
    • Link between the membrane-bound pyridine nucleotide transhydrogenase and glutathione-dependent processes in Rhodobacter sphaeroides
    • 10.1128/JB.184.2.400-409.2002, 139586, 11751816
    • Hickman JW, Barber RD, Skaar EP, Donohue TJ. Link between the membrane-bound pyridine nucleotide transhydrogenase and glutathione-dependent processes in Rhodobacter sphaeroides. J Bacteriol 2002, 184(2):400-409. 10.1128/JB.184.2.400-409.2002, 139586, 11751816.
    • (2002) J Bacteriol , vol.184 , Issue.2 , pp. 400-409
    • Hickman, J.W.1    Barber, R.D.2    Skaar, E.P.3    Donohue, T.J.4
  • 32
    • 0037424378 scopus 로고    scopus 로고
    • Aspartate dehydrogenase, a novel enzyme identified from structural and functional studies of TM1643
    • 10.1074/jbc.M211892200, 12496312
    • Yang Z, Savchenko A, Yakunin A, Zhang R, Edwards A, Arrowsmith C, Tong L. Aspartate dehydrogenase, a novel enzyme identified from structural and functional studies of TM1643. J Biol Chem 2003, 278(10):8804-8808. 10.1074/jbc.M211892200, 12496312.
    • (2003) J Biol Chem , vol.278 , Issue.10 , pp. 8804-8808
    • Yang, Z.1    Savchenko, A.2    Yakunin, A.3    Zhang, R.4    Edwards, A.5    Arrowsmith, C.6    Tong, L.7
  • 33
    • 33745218027 scopus 로고    scopus 로고
    • The first archaeal L-aspartate dehydrogenase from the hyperthermophile Archaeoglobus fulgidus: gene cloning and enzymological characterization
    • 10.1016/j.bbapap.2006.04.006, 16731057
    • Yoneda K, Kawakami R, Tagashira Y, Sakuraba H, Goda S, Ohshima T. The first archaeal L-aspartate dehydrogenase from the hyperthermophile Archaeoglobus fulgidus: gene cloning and enzymological characterization. Biochim Biophys Acta 2006, 1764(6):1087-1093. 10.1016/j.bbapap.2006.04.006, 16731057.
    • (2006) Biochim Biophys Acta , vol.1764 , Issue.6 , pp. 1087-1093
    • Yoneda, K.1    Kawakami, R.2    Tagashira, Y.3    Sakuraba, H.4    Goda, S.5    Ohshima, T.6
  • 34
    • 14244256095 scopus 로고    scopus 로고
    • Experimental identification and quantification of glucose metabolism in seven bacterial species
    • 10.1128/JB.187.5.1581-1590.2005, 1064017, 15716428
    • Fuhrer T, Fischer E, Sauer U. Experimental identification and quantification of glucose metabolism in seven bacterial species. J Bacteriol 2005, 187(5):1581-1590. 10.1128/JB.187.5.1581-1590.2005, 1064017, 15716428.
    • (2005) J Bacteriol , vol.187 , Issue.5 , pp. 1581-1590
    • Fuhrer, T.1    Fischer, E.2    Sauer, U.3
  • 35
    • 0023968065 scopus 로고
    • Molecular genetics of photosynthetic membrane biosynthesis in Rhodobacter sphaeroides
    • 372705, 3280966
    • Kiley PJ, Kaplan S. Molecular genetics of photosynthetic membrane biosynthesis in Rhodobacter sphaeroides. Microbiol Rev 1988, 52(1):50-69. 372705, 3280966.
    • (1988) Microbiol Rev , vol.52 , Issue.1 , pp. 50-69
    • Kiley, P.J.1    Kaplan, S.2
  • 36
    • 77951612556 scopus 로고    scopus 로고
    • BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions
    • 10.1186/1471-2105-11-213, 2874806, 20426874
    • Schellenberger J, Park JO, Conrad TM, Palsson BO. BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions. BMC Bioinformatics 2010, 11:213. 10.1186/1471-2105-11-213, 2874806, 20426874.
    • (2010) BMC Bioinformatics , vol.11 , pp. 213
    • Schellenberger, J.1    Park, J.O.2    Conrad, T.M.3    Palsson, B.O.4
  • 37
    • 0022555851 scopus 로고
    • Bacterial periplasmic transport systems: structure, mechanism, and evolution
    • 10.1146/annurev.bi.55.070186.002145, 3527048
    • Ames GF. Bacterial periplasmic transport systems: structure, mechanism, and evolution. Annu Rev Biochem 1986, 55:397-425. 10.1146/annurev.bi.55.070186.002145, 3527048.
    • (1986) Annu Rev Biochem , vol.55 , pp. 397-425
    • Ames, G.F.1
  • 38
    • 0035019469 scopus 로고    scopus 로고
    • ABC transporters: physiology, structure and mechanism-an overview
    • Higgins CF. ABC transporters: physiology, structure and mechanism-an overview. Res Microbiol 2001, 152(3-4):205-210.
    • (2001) Res Microbiol , vol.152 , Issue.3-4 , pp. 205-210
    • Higgins, C.F.1
  • 39
    • 0031943304 scopus 로고    scopus 로고
    • The Escherichia coli ATP-binding cassette (ABC) proteins
    • Linton KJ, Higgins CF. The Escherichia coli ATP-binding cassette (ABC) proteins. Mol Microbiol 1998, 28(1):5-13.
    • (1998) Mol Microbiol , vol.28 , Issue.1 , pp. 5-13
    • Linton, K.J.1    Higgins, C.F.2
  • 40
    • 60749083913 scopus 로고    scopus 로고
    • ABC transporters: the power to change
    • 10.1038/nrm2646, 2830722, 19234479
    • Rees DC, Johnson E, Lewinson O. ABC transporters: the power to change. Nat Rev Mol Cell Biol 2009, 10(3):218-227. 10.1038/nrm2646, 2830722, 19234479.
    • (2009) Nat Rev Mol Cell Biol , vol.10 , Issue.3 , pp. 218-227
    • Rees, D.C.1    Johnson, E.2    Lewinson, O.3
  • 41
    • 84861398402 scopus 로고    scopus 로고
    • Comparative multi-omics systems analysis of Escherichia coli strains B and K-12
    • 10.1186/gb-2012-13-5-r37, 3446290, 22632713
    • Yoon SH, Han MJ, Jeong H, Lee CH, Xia XX, Lee DH, Shim JH, Lee SY, Oh TK, Kim JF. Comparative multi-omics systems analysis of Escherichia coli strains B and K-12. Genome Biol 2012, 13(5):R37. 10.1186/gb-2012-13-5-r37, 3446290, 22632713.
    • (2012) Genome Biol , vol.13 , Issue.5
    • Yoon, S.H.1    Han, M.J.2    Jeong, H.3    Lee, C.H.4    Xia, X.X.5    Lee, D.H.6    Shim, J.H.7    Lee, S.Y.8    Oh, T.K.9    Kim, J.F.10
  • 42
    • 78349239648 scopus 로고    scopus 로고
    • An automated phenotype-driven approach (GeneForce) for refining metabolic and regulatory models
    • 10.1371/journal.pcbi.1000970, 2965739, 21060853
    • Barua D, Kim J, Reed JL. An automated phenotype-driven approach (GeneForce) for refining metabolic and regulatory models. PLoS Comput Biol 2010, 6(10):e1000970. 10.1371/journal.pcbi.1000970, 2965739, 21060853.
    • (2010) PLoS Comput Biol , vol.6 , Issue.10
    • Barua, D.1    Kim, J.2    Reed, J.L.3
  • 43
  • 44
    • 78650595350 scopus 로고    scopus 로고
    • Improving the iMM904 S. cerevisiae metabolic model using essentiality and synthetic lethality data
    • 10.1186/1752-0509-4-178, 3023687, 21190580
    • Zomorrodi AR, Maranas CD. Improving the iMM904 S. cerevisiae metabolic model using essentiality and synthetic lethality data. BMC Syst Biol 2010, 4:178. 10.1186/1752-0509-4-178, 3023687, 21190580.
    • (2010) BMC Syst Biol , vol.4 , pp. 178
    • Zomorrodi, A.R.1    Maranas, C.D.2
  • 45
    • 72849182812 scopus 로고
    • A requirement for sodium in the growth of Rhodopseudomonas spheroides
    • 10.1099/00221287-22-3-778, 14447230
    • Sistrom WR. A requirement for sodium in the growth of Rhodopseudomonas spheroides. J Gen Microbiol 1960, 22:778-785. 10.1099/00221287-22-3-778, 14447230.
    • (1960) J Gen Microbiol , vol.22 , pp. 778-785
    • Sistrom, W.R.1
  • 46
    • 58349122104 scopus 로고    scopus 로고
    • Overcoming the anaerobic hurdle in phenotypic microarrays: generation and visualization of growth curve data for Desulfovibrio vulgaris Hildenborough
    • 10.1016/j.mimet.2008.10.003, 18996155
    • Borglin S, Joyner D, Jacobsen J, Mukhopadhyay A, Hazen TC. Overcoming the anaerobic hurdle in phenotypic microarrays: generation and visualization of growth curve data for Desulfovibrio vulgaris Hildenborough. J Microbiol Methods 2009, 76(2):159-168. 10.1016/j.mimet.2008.10.003, 18996155.
    • (2009) J Microbiol Methods , vol.76 , Issue.2 , pp. 159-168
    • Borglin, S.1    Joyner, D.2    Jacobsen, J.3    Mukhopadhyay, A.4    Hazen, T.C.5
  • 47
    • 0021971186 scopus 로고
    • A new medium for the enumeration and subculture of bacteria from potable water
    • 238333, 3883894
    • Reasoner DJ, Geldreich EE. A new medium for the enumeration and subculture of bacteria from potable water. Appl Environ Microbiol 1985, 49(1):1-7. 238333, 3883894.
    • (1985) Appl Environ Microbiol , vol.49 , Issue.1 , pp. 1-7
    • Reasoner, D.J.1    Geldreich, E.E.2
  • 48
    • 0028289983 scopus 로고
    • Small mobilizable multi-purpose cloning vectors derived from the Escherichia coli plasmids pK18 and pK19: selection of defined deletions in the chromosome of Corynebacterium glutamicum
    • 10.1016/0378-1119(94)90324-7, 8045426
    • Schafer A, Tauch A, Jager W, Kalinowski J, Thierbach G, Puhler A. Small mobilizable multi-purpose cloning vectors derived from the Escherichia coli plasmids pK18 and pK19: selection of defined deletions in the chromosome of Corynebacterium glutamicum. Gene 1994, 145(1):69-73. 10.1016/0378-1119(94)90324-7, 8045426.
    • (1994) Gene , vol.145 , Issue.1 , pp. 69-73
    • Schafer, A.1    Tauch, A.2    Jager, W.3    Kalinowski, J.4    Thierbach, G.5    Puhler, A.6
  • 49
    • 22544463928 scopus 로고    scopus 로고
    • Identification of genes required for recycling reducing power during photosynthetic growth
    • 10.1128/JB.187.15.5249-5258.2005, 1196016, 16030219
    • Tavano CL, Podevels AM, Donohue TJ. Identification of genes required for recycling reducing power during photosynthetic growth. J Bacteriol 2005, 187(15):5249-5258. 10.1128/JB.187.15.5249-5258.2005, 1196016, 16030219.
    • (2005) J Bacteriol , vol.187 , Issue.15 , pp. 5249-5258
    • Tavano, C.L.1    Podevels, A.M.2    Donohue, T.J.3
  • 50
    • 0035710746 scopus 로고    scopus 로고
    • Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method
    • 10.1006/meth.2001.1262, 11846609
    • Livak KJ, Schmittgen TD. Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. Methods 2001, 25(4):402-408. 10.1006/meth.2001.1262, 11846609.
    • (2001) Methods , vol.25 , Issue.4 , pp. 402-408
    • Livak, K.J.1    Schmittgen, T.D.2
  • 51
    • 0028108519 scopus 로고
    • Metabolic flux balancing: basic concepts, scientific and practical use
    • Varma A, Palsson BO. Metabolic flux balancing: basic concepts, scientific and practical use. Nat Biotechnol 1994, 12:994-998.
    • (1994) Nat Biotechnol , vol.12 , pp. 994-998
    • Varma, A.1    Palsson, B.O.2
  • 52
    • 1642457253 scopus 로고    scopus 로고
    • The effects of alternate optimal solutions in constraint-based genome-scale metabolic models
    • 10.1016/j.ymben.2003.09.002, 14642354
    • Mahadevan R, Schilling CH. The effects of alternate optimal solutions in constraint-based genome-scale metabolic models. Metab Eng 2003, 5(4):264-276. 10.1016/j.ymben.2003.09.002, 14642354.
    • (2003) Metab Eng , vol.5 , Issue.4 , pp. 264-276
    • Mahadevan, R.1    Schilling, C.H.2
  • 53
    • 0034661295 scopus 로고    scopus 로고
    • Recursive MILP model for finding all the alternate optima in LP models for metabolic networks
    • Lee S, Phalakornkule C, Domach MM, Grossmann IE. Recursive MILP model for finding all the alternate optima in LP models for metabolic networks. Computers & Chemical Engineering 2000, 24(2-7):711-716.
    • (2000) Computers & Chemical Engineering , vol.24 , Issue.2-7 , pp. 711-716
    • Lee, S.1    Phalakornkule, C.2    Domach, M.M.3    Grossmann, I.E.4
  • 54
    • 4644220226 scopus 로고    scopus 로고
    • Genome-scale in silico models of E. coli have multiple equivalent phenotypic states: assessment of correlated reaction subsets that comprise network states
    • 10.1101/gr.2546004, 515326, 15342562
    • Reed JL, Palsson BO. Genome-scale in silico models of E. coli have multiple equivalent phenotypic states: assessment of correlated reaction subsets that comprise network states. Genome Res 2004, 14(9):1797-1805. 10.1101/gr.2546004, 515326, 15342562.
    • (2004) Genome Res , vol.14 , Issue.9 , pp. 1797-1805
    • Reed, J.L.1    Palsson, B.O.2
  • 55
    • 70049110173 scopus 로고    scopus 로고
    • Interpreting expression data with metabolic flux models: predicting Mycobacterium tuberculosis mycolic acid production
    • 10.1371/journal.pcbi.1000489, 2726785, 19714220
    • Colijn C, Brandes A, Zucker J, Lun DS, Weiner B, Farhat MR, Cheng TY, Moody DB, Murray M, Galagan JE. Interpreting expression data with metabolic flux models: predicting Mycobacterium tuberculosis mycolic acid production. PLoS Comput Biol 2009, 5(8):e1000489. 10.1371/journal.pcbi.1000489, 2726785, 19714220.
    • (2009) PLoS Comput Biol , vol.5 , Issue.8
    • Colijn, C.1    Brandes, A.2    Zucker, J.3    Lun, D.S.4    Weiner, B.5    Farhat, M.R.6    Cheng, T.Y.7    Moody, D.B.8    Murray, M.9    Galagan, J.E.10
  • 56
    • 0036081062 scopus 로고    scopus 로고
    • The KEGG databases at GenomeNet
    • 10.1093/nar/30.1.42, 99091, 11752249
    • Kanehisa M, Goto S, Kawashima S, Nakaya A. The KEGG databases at GenomeNet. Nucleic Acids Res 2002, 30(1):42-46. 10.1093/nar/30.1.42, 99091, 11752249.
    • (2002) Nucleic Acids Res , vol.30 , Issue.1 , pp. 42-46
    • Kanehisa, M.1    Goto, S.2    Kawashima, S.3    Nakaya, A.4
  • 58
    • 0036081012 scopus 로고    scopus 로고
    • BRENDA, enzyme data and metabolic information
    • 10.1093/nar/30.1.47, 99121, 11752250
    • Schomburg I, Chang A, Schomburg D. BRENDA, enzyme data and metabolic information. Nucleic Acids Res 2002, 30(1):47-49. 10.1093/nar/30.1.47, 99121, 11752250.
    • (2002) Nucleic Acids Res , vol.30 , Issue.1 , pp. 47-49
    • Schomburg, I.1    Chang, A.2    Schomburg, D.3
  • 59
    • 78651104413 scopus 로고    scopus 로고
    • Biotechnological potential of the ethylmalonyl-CoA pathway
    • 10.1007/s00253-010-2873-z, 20882276
    • Alber BE. Biotechnological potential of the ethylmalonyl-CoA pathway. Appl Microbiol Biotechnol 2011, 89(1):17-25. 10.1007/s00253-010-2873-z, 20882276.
    • (2011) Appl Microbiol Biotechnol , vol.89 , Issue.1 , pp. 17-25
    • Alber, B.E.1


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